Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <---------AHL20(1)        --------->ZAT18        --------->ZAT14              <---------ANAC55(2)                    --------->ANAC55(2)        <---------ZAT14              --------->ANAC58             <---------MYB46(3) -------DOF2          --------->ARR11(3)                          ----------->GT1 ----ZAT2   <---------ANAC46         --------->ANAC55(1)         <---------AtMYB61 ----At4g35610--------->ALFIN1       --------->ANAC58          <---------ANAC58                  <--- --->ZAT2 <---------ANAC46           --------->ANAC46          <---------ANAC46                 <---- --->At4g35610<---------ANAC46----------->GT1                  <---------ANAC58                 ----- >TEIL --------->ALFIN1       <---------MYB46(3)              --------->ATHB12          --------->ALFIN1 -----------WRI1      --------->AHL20(1)                  <---------ANAC46  <---------ANAC55(2) -----   tttcaaggagtgcagggtgtgtgatatattggtggtaacacgttagaaagtttgtaactggtgttgagtggttgaattatgtattgcagagtgttggatc  23463500                                                                 ---------->DOF2                                                      <---------HSFB2a(2)                                                   --------->ARR14(2)        ---------->DOF2                            <---------ARR14(2)  <---------HSFB2a(2)                              <---------ARR11(1)                           <----  --------->HSFB2a(2)               <---------ANAC46 <---------LBD16<---------At4g35610         ----- <---------ANAC58          --------->LBD16         <---------ARR11(3)                           <---- <---------ANAC46         --------->LBD16          --------->ARR11(3)                           ----- <---------ANAC58        <---------LBD16          <---------CCA1(2) --------->At4g35610     <-------- ----GAMYB             <------ZmHOX2a(2)        <---------------AGL15                       --------- -----MYB46(3)        --------->ARR14(2)       ----------------->AGL2   <---------ARR14(2) <---------At4g35610 ---->MYB52(2)        <---------ARR14(2)       <-----------------AGL3   --------->ARR14(2) --------->At4g35610 ->ZmHOX2a(2)        <---------ATERF1(1)   <-------TEIL      <---------ZAT14       --------->ALFIN1   gttgctggaagaaagcttgagggcgatcccggactgtgtcttagattcacccatatctgggagtccagagagcggagacgaagatgtgttcgcagatgtg  23463600                        <---------At4g35610                        --------->ZAT2                       --------->GLK1(2)                       ------->TEIL                    --------->ANAC46                   --------->SPL7                --------->AtMYB61              ------>NtERF2              ----------->RAV1(1) -----ZAT14  <---------ALFIN1 ---->ZAT18  --------->ANAC46 -----ZAT18 --------->MYB46(3)                            <---------ANAC58                      <---- ---->ZAT14 <------NtERF2            <---------ATHB12     <---------ANAC58                     ------ -ARR14(2) ------>NtERF2<---------ZAT2--------->YAB1--------->MYB52(2)          <---------WOX13(1)  - >ARR14(2)--------->PCF2--------->At4g35610       <----------DOF2            <---------YAB1    <-----   cacaatgtattgcccccaccatacgaagctggagaagaaatcatcttatgcgcttagttgtcgtttgtaatctgtgtttgtgattgtctctgtcgattaa  23463700                               --------->MYB55(2)                               --------->MYB111(1)                               <---------MYB46(3)                               --------->MYB111(2)                              <--------P                                             <------NtERF2                            <---------MYB46(3)                                      ----------->GT1                           --------->ALFIN1                                         <------NtERF2 -----YAB1           --------------->AGL15                                          --------->LBD16 --->AHL20(2)        <---------------AGL15                                         --------->RAP2.6(2) ---------->GT1 <---------ANAC58 <---------MYB52(1)      <----------DOF2          <---------LBD16   < ----AHL20(2)   <---------ANAC58<-------GAMYB <---------ANAC46       <---------AHL20(2)           <--   aattgtaaattgaacggggcttacttcaagtggttgttagtcttgggctcgtgtatgggcttttttgttattttttttgtttgggccggaaatataactg  23463800                                  --------->ALFIN1                                  ----------->HVH21                                <---------ANAC58                                <---------ANAC46                                --------->TGA1a                                --------->O2                                <---------O2                                <---------TGA1a            <---------PCF2                                <---------bZIP60(2)       ------>NtERF2                          <---------MYB52(1)   ------>NtERF2                         =================MYC_MYB        --------->LBD16           --------->ANAC58     <---------ANAC58        --------->ATERF1(1)           --------->ANAC58  ----------->HVH21 --------->LBD16      --------->At4g35610<-------GAMYB        --------->ANAC46                          ------>ZmHOX2a(1)    <---------ICU4      <---------ANAC58     <---------LBD16                           <---------ALFIN1 --------->WOX13(1)     <---------ANAC58   <---------ARR14(2)                         *TSS      <---- -------TEIL         --------->GLK1(2)     --------->ARR14(2)      <-----------GT1  <---------ALFIN1 -------TCP16(1)    <---------GLK1(2)  <------NtERF2   <---------LBD16           <-----------GT1-----   ggtccatcatctcaagaaaaaagattccgttgcgacgtggcagcgtttccgccaagacgcgggccatattatctggtctcaaatcacctcctccttgcag  23463900                                                                                               ------                                                                                             --------                                                                                             --------                                                                                             <-------                  ----------->ARR10                                                          <-------                 <------NtERF2                                                            <---------HSFB2a(2)              <---------LBD16                                                        --------->HSFC1(2)          <---------ICU4                     --------->At4g35610                     <---------HSFC1(2)          <------------ATHB5           --------->At4g35610                           <---------HSFB2a(1)          --------->YAB1            --------->ZAT2                                   --------->HSFB2a(1)         --------->ICU4             <---------At4g35610                         ------>ZmHOX2a(1)         <---------ATHB12           <---------ZAT2                              <---------HSFB2a(2)<-       --------->WOX13(1)           <------NtERF2                               ===================== -----At4g35610 --------->LBD16     --------->At4g35610                  <---------GLK1(1)--------->HSFB2a(2) ---->At4g35610<---------ANAC46<---------bZIP60(1)        ------>ZmHOX2a(1)     --------->HSFB2a(2)--   caaaacaaacaatcatggcggagaaactcagtgatggcagcagcatcatctcagtccatcctagaccctccaagggtttctcctcgaagcttctcgatct  23464000                                                                                          =========== >ZmHOX2a(2)                                                                              ------>ZmHOX2a(1) ->ARR11(3)                                                                               =========== ->ARR14(2)                     <---------ANAC58                                    ------->TEIL --ARR11(3)                     <---------ANAC58          --------->ANAC46   --------->LBD16 --ARR14(2)                    <---------HSFC1(2)         --------->ANAC58  --------->ANAC55(2) <---- --------HSFB2a(2)             --------->HSFB2a(1)        --------->ANAC58  <---------ANAC55(2)------ =HOX2a_HOX2a                  --------->HSFC1(2)<---------ALFIN1           <---------ANAC58  <------ ------->HSFB2a(2)         --------->ANAC46  --------->ZAT14                <---------ANAC58 --------   tctcgagagacttgttgtcaagctcatgcacgatgcttctctccctctccactacctctcaggcaacttcgctcccatccgtgatgaaactcctcccgtc  23464100   ------>ZmHOX2a(2)  --------->GLK1(1)  <---------GLK1(1)  <------ZmHOX2a(2) <-----------ARR10                                                 ----------->GT1 <---------ARR11(3)                                             --------->MYB52(1) <---------ARR14(2)                                            <---------STY1(1) --------->ARR14(2)                                        <-----------------AG --------->ARR14(3)              --------->GLK1(2)         <-----------------AGL2 --------->ARR11(3)        --------->LBD16              ------>ZmHOX2a(1) ========HOX2a_HOX2a      <---------ANAC46      <----------DOF2--------->STY1(1)               <----- =========HOX2a_HOX2a<---------ANAC58           --------------------->WRI1                 <---------CCA1(2) -----WRKY12         <---------ANAC58     <---------ARR14(2)--------------->AGL15        ------>ZmHOX2a(2) --->WRKY18(1)    --------->GLK1(1)       --------->ARR14(2)<---------------AGL15        ============ -----HVH21       <---------GLK1(1)    --------->YAB1 ------>ZmHOX2a(2)               --------->YAB1 ->ANAC46<-----------HVH21--------->LBD16 <---------GLK1(2)<-----------------AGL1    <---------YAB1   aaggatctccccgtccatggatttcttcccgtgaaattctctcatattctctttgatcctttcccctaagggttatttagtattcttatgatcgtctctt  23464200                                                                                   <-------MYC4                                                                                   <-------PIF5                                                                                   <-------MYC2                                                                                   ------->PIF5                                                                                   <-------MYC3                                            <---------ALFIN1                       ------->MYC3                    ----------->GT1   <------MYB46(1)                              ------->MYC2             <---------ANAC58         <------MYB83                                --------->HSFB2a(1)             <---------ANAC58        <---------MYB46(3)                           --------->ANAC58        <------ZmHOX2a(1)            --------->MYB111(1)               <---------GLK1(1)      <---------TOE2(2)              <---------AtMYB61                 --------->GLK1(1)        <<<<<      <---------TOE1(2)              --------->MYB59               <---------TOE1(2)         <<<<<<<< -----DOF2  --------->ATHB12        <--------P                <-----------HVH21   --------->ANAC58 ==============HOX2a_HOX2a         <-------GAMYB             <-----------RAV1(1)  <---------HSFB2a(1)   ttgtctcgcaggaatgcttgaatggtgaatttgtgagggttggtccaaaccccaagtttgatgctgtcgctggatatcactggcacgttctcttcttctt  23464300                           <---------ICU4                    --------->AHL20(2)                    --------->ATHB51                    -------->ATHB1                                                             <-----                   <---------ATHB51                                                            <-----                   <---------ATHB12                             --------->ZAT2                 ------                <---------AHL20(2)                <---------AHL20(2)       <---------TOE1(3)   <-----        <---------At5g28300--------->YAB1        --------->AHL20(2)   <----------DOF2          <-----    <---------ICU4 --------->ICU4 <---------DEAR3(2)            <---------ZAT2            <---------- <<<<TBF1--------->ZAT6   <---------YAB1--------------->AGL15   --------->ZAT14           <---------- <TBF1 <-----------GT1  --------->YAB1  ------>ZmHOX2a(1) <---------ALFIN1 <---------TOE2(3)  <------   cttccatttttacagtattcaattattcatcatggtcgcttcctacttatattaaatgcttcaccctgctctcttttcaggtttgatggagatgggtacg  23464400  Previous    Next  AGI:  At3g63510.1    Description:  FAD binding / catalytic/ tRNA dihydrouridine synthase. similar to nitrogen regulation family protein [Arabidopsis thaliana] (TAIR:AT5G47970.1); similar to nitrogen regulation family protein [Arabidopsis thaliana] (TAIR:AT5G47970.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO40819.1); contains InterPro domain Dihydrouridine synthase, DuS; (InterPro:IPR001269); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 23461511    to: 23463769    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g63520.1    Description:  CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1). Identical to Carotenoid cleavage dioxygenase 1 (CCD1) [Arabidopsis Thaliana] (GB:O65572;GB:Q8GRI2;GB:Q9LY63); similar to NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) [Arabidopsis thaliana] (TAIR:AT4G19170.1); similar to 9,10[9',10']carotenoid cleavage dioxygenase [Vitis vinifera] (GB:AAX48772.1); similar to carotenoid cleavage dioxygenase [Cucumis melo] (GB:ABB82946.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40837.1); contains InterPro domain Carotenoid oxygenase (InterPro:IPR004294) Range:  from: 23463886    to: 23467053    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version