Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           --------->ANAC46           -                                                               <---------YAB1                 <------                                                      <---------At4g35610--------->ANAC58     -------                                                      --------->At4g35610--------->bZIP60(2)  -------                                                 --------->LBD16  <---------YAB1       ------>ZmHOX2a(2)       --------->DAG2                           <---------LBD16<---------ATHB12--------->ATHB12    --      ---------->DOF2                           <---------ANAC46--------->YAB1<---------YAB1--------- ----------DOF2                       <------ZmHOX2a(2)        --------->ICU4 --------->ICU4<-------- -->GLK1(1)                          --------->AGP1   ----------->RAV1(2)--------->ANAC58 --------->DEAR3(1) ---GLK1(1)             <-----------RAV1(2) <---------SPL7   <---------At4g35610     --------->ARR14(2)   ccctttggaaaagccctccttgagaaacaggcgctctcagatcgatggtaccgggcatctggccgatgattatccaagtcacgattggatcgcctacggg  23460800                       <----------TaMYB80                       --------->At4g35610                      <-----------ARR10                      <---------ARR11(3)   <-------GAMYB                    <---------At4g35610   --------->MYB52(2)                 --------->ATERF1(1)      <---------MYB46(3)                 <------NtERF2 ------>NtERF2                                                        <                <---------RAP2.6(3)       --------->MYB111(2)                                     ---                <---------ATERF1(1)       --------->MYB55(2)      <---------MYB46(3)              <--     <---------LBD16<------NtERF2         <-----------RAV1(1)     --------->MYB55(2)       --------->ZAT2 -------->DAG2  ------>NtERF2  --------->LBD16                   --------->ALFIN1    <---------SPL7 - ---HSFB2a(2)  <---------ATERF1(2)      <-------GAMYB           <---------MYB52(1)  <---------DEAR3(2) -->LBD16      --------->ATERF1(2) --------->WRKY18(1)         --------->LBD16  <---------SPL7    --- -->HSFB2a(2) --------->RAP2.6(3)  ----------->HVH21          <---------DEAR3(1)----------->HVH21 <-- -------->DOF2<---------LBD16 --------->ANAC46    <---------HSFB2a(2)  <------ZmHOX2a(1)   <---------ZAT2 >MYB52(1)    --------->ATERF1(1) <-----------HVH21          <---------LBD16    <------NtERF2     <-- -LBD16     --------->GLK1(2)<---------LBD16     --------->LBD16<-----------HVH21 --------->SPL7  <--   aaaaagccctggagaagccggcagcatcttccccgcggtcacggttgttgcccgagaagaagccccggtgggaggaagaggccggacggtccgagttggg  23460900                                                 ------>ZmHOX2a(2)      --------->LBD16                          <---------ARR14(2)     --------->ANAC46                          --------->ARR14(2) ---------ARR14(2)                             <---------ARR11(3)                   <-----------HVH21 ------>HSFC1(2)                               <---------AGP1                      <---------ANAC58 -------HSFB2a(1)            --------->GLK1(1) --------->ARR11(3)                  <---------ANAC58 -------->ARR14(2)    <---------YAB1          <---------CCA1(2)                    --------->ANAC46 ------>HSFB2a(1)   --------->YAB1          <---------TOE1(2)                 --------->ARR14(2) ----MYB83          <--------HAHB4       <---------DEAR3(1)                   <---------ARR14(2) ----MYB46(1)       <---------ICU4      <------NtERF2                    --------->At4g35610 -------HSFC1(2)   <---------YAB1     <---------DEAR3(1)             --------->MYB52(2)  ---------->DOF2   aggttctccgtcaacattcttatcattacagaaatcaaggtcgtcgctggatcttagtctcttcatcgttttagttgctgaatatgcgtcagaaagctag  23461000                     <---------At4g35610                     --------->At4g35610          ------>ZmHOX2a(2)                                               --------->ALFIN1          ==================================HOX2a_HOX2a                 --------->ARR14(2)          ----------->GT1                                               <---------ARR14(2)        --------->ARR14(2)           <------ZmHOX2a(1)                 --------->ATHB12    --------->ETT(1)        <---------ARR14(2) --------->ANAC58                           <---------YAB1       <<<<<<<<<<AtTINY2       <------ZmHOX2a(1)   --------->ANAC58----------->GT1       ----------->RAV1(2) <-------TEIL   -   ggtttatgaggatcggaaattgcagcaaaacgcacaagaggagaagggaaacaaaatagaagagagtacctgaagattggggcaagattcatgtcggaag  23461100                       <----------DOF2                      <---------DAG2         --------->ANAC55(1)                    ------>NtERF2            --------->ANAC46  --------->ANAC58                  ----                 --------->ZAT2              --------->ANAC58  --------->ANAC46                  ----                 --------->At4g35610         <---------ANAC55(2)      ------------------------>ANAC81                 <---------At4g35610         --------->ANAC58  --------->ANAC58     --------->DAG2               <-----------RAV1(2)           --------->ANAC55(2)      --------->ALFIN1    <---------KAN4(1)              <-------TEIL  --------->AHL20(2)  --------->MYB52(1)    *TSS      <----------ID1   ----            --------->ARR14(2)       --------->ANAC58     <------ZmHOX2a(1)<------ZmHOX2a(1) <-------            <---------ARR14(2)       --------->ANAC58  <---------------------WRI1  ---------->DOF2 -------->TOE1(3)<---------ZAT2    --------->TOE1(2)  <------ZmHOX2a(1) <------ZmHOX2a(1) --------->KAN4(1)   aaccctaacttgcagattcagctgccttttttatataccaaggaatcacgcaacgaggaaggagcaagcaaggaggaggaagacgaaaaggaatattaca  23461200                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                  <--                                                                                                 <---                                                                                           <---------ANAC58                                                                                           <---------ANAC58                                                                                          <---------DEAR3(1)                                                                    --------->At4g35610 <-------MYC3                                                                    <---------At4g35610 <-------MYC2 ----->ANAC58   --------->ANAC58                             --------->At4g35610        ------->MYC3 ----->ANAC46   --------->ANAC58                             <---------At4g35610        --------->TOE1(2) ----->ANAC58  --------->DAG2           <----------DOF2      ----------->RAV1(2)        ------->MYC2< ----GT1      ---------->DOF2<----------DOF2          <-----------GT1     ---------->DOF2--------->ALFIN1   agtcaaactgagtgggaaaagcaccatttccctttgccctccctttactcgcttatttacatcatctgccatctcccaaagaccagagaacgtgggtgtt  23461300                                                     ------>ZmHOX2a(1)                                                    --------->ANAC46                                                 <---------ARR14(2)                                                 <---------ARR11(1)                                                 --------->ARR14(2)                                                <---------CCA1(2)             <---------ANAC58                <------NtERF2             --------->ICU4         <-------GAMYB                     <---------bZIP60(1)         <---------AHL20(2)        <---------ANAC58                   --------->bZIP60(1)      <---------AHL20(2)        <---------ANAC58                   <---------ANAC46        --------->AHL20(2) --------ANAC55(2)                       --------->REM1(2)--------->AtMYB61   <---------ZAT6 ------->bZIP60(1)                      --------->ALFIN1  --------->ZAT6<---------ICU4 ------->ANAC55(2)                    <---------ANAC58  ----------->RAV1(1)  <---------YAB1 ------->ANAC46                       <---------ANAC58 --------->ANAC46--------->AHL20(2) ---------STF1                        <---------ANAC46 <---------ALFIN1<---------ATHB51---------->DOF2 --------GT1 <---------ANAC58         <---------ANAC55(2) <---------ALFIN1--------->ICU4 -----------TGA1      <---------ATHB12--------->ANAC55(2)--------->MYB46(3)<---------ICU4       <----   tacgtcattttcgttgctagtccaatctttgactcttatcgcgtgtcgtcgtatcctccaccactagcattaaataattagtattaaactaaagacactt  23461400                                                     --------->DAG2                              <---                                                    ---------->DOF2                           <------                                                 <---------ANAC55(2)                       <---------YAB1                                          ----------->TBP                                  --------->ICU4              --------->At4g35610       --------->CCA1(2)                                 --------->TOE2(3)          <-----------HVH21       --------->YAB1 <---------ANAC46                        --------->YAB1 <---------ANAC58                <---------YAB1  <---------ANAC58                        <---------ICU4 <---------ANAC46           --------->ANAC46     <---------ANAC58                      <-----------GT1 <---------ANAC58         ------>ZmHOX2a(1)--------->AHL20(2)     --------->YAB1   --------->TOE2(3) -------RAV1(1)      <----------DOF2   <---------ARR11(3)---------->DOF2           <----------DOF2   gttgctgggctctatcagtggccctttcctactccatcatagatataaaatgcgtaaagtaaggcccatcacaactacttatatactttaaacattatta  23461500                                                                <---------ANAC46                                                              <---------ANAC58                                                       --------------->AGL15                                                       <---------------AGL15                                         --------->ARR11(3)   <---------ANAC58                                         <---------ARR11(3)  --------->ALFIN1           *TSS            <---------MYB52(2)         ----------------->AGL3           <---------MYB52(1)   ----------->GT1       ----------------->AG                       <--- ------TOE2(3)<---------YAB1 --------->MYB52(1)       ----------------->AGL1         ------>MYB46(1) ---YAB1 <---------ZAT6    --------->MYB46(3)         <-----------------AGL2         ------>MYB83----   atgttcccttactgttatgctagttccaaacaaacggtttcattatcttctccaattccaaatgtggtgtctaccatctgttcgaccaaatgtctctgag  23461600                                   <---------ARR14(2)                      <---------TOE1(3)                                   <---------GLK1(2)      --------->ARR14(2)                                   --------->ARR14(2)     <---------ARR14(2)          --------->ZAT18  ------>MYB83  --------->ANAC46<---------CCA1(2)<-----------RAV1(2) ------ARR11(3)            ------>MYB46(1)  <---------ALFIN1        ------>ZmHOX2a(1) ----->ARR11(3)           <---------ALFIN1------>ZmHOX2a(1)      ------>ZmHOX2a(1) <-----------GT1 --   atgttcttcaagtccccaatgctcaaacccactgctagattctcctccacttcgtctccctatcttcctccttccttcaggttttttgctctctctcaga  23461700  Previous    Next  AGI:  At3g63500.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40811.1); contains InterPro domain Protein of unknown function DUF1423, plant (InterPro:IPR004082) Range:  from: 23457205    to: 23461170    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g63510.1    Description:  FAD binding / catalytic/ tRNA dihydrouridine synthase. similar to nitrogen regulation family protein [Arabidopsis thaliana] (TAIR:AT5G47970.1); similar to nitrogen regulation family protein [Arabidopsis thaliana] (TAIR:AT5G47970.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO40819.1); contains InterPro domain Dihydrouridine synthase, DuS; (InterPro:IPR001269); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 23461511    to: 23463769    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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