Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <---------GLK1(1)                  ------>ZmHOX2a(1)            --------->GLK1(1)       <---------ARR11(3)             <---------ARR14(2)                                         <---       --------->ARR11(3)             --------->ARR14(2)                             <---------YAB1   --------->WRKY12                   <---------GLK1(2)                           <---------AHL20(2)  --------->DOF5.7(2)   <----------DOF2--------->GLK1(2)                       ------->TEIL<---------   agacgttgacatcttctctcctcgctcttttttttcttcagattcttagaattccacttgtacatttttatcagggtaatgcattttatgcttctttaac  23449000                              --------->AHL20(2)                           -------->ATHB1                           --------->ATHB51                           --------->YAB1                           <--------HAHB4                           <---------AHL20(2)                           -------->HAHB4                           <---------ICU4                          <---------ATHB51  --------->YAB1                          --------->ICU4    -------->ATHB1                          <---------YAB1    --------->ATHB12                        <---------ICU4      <---------ICU4                        --------->YAB1     <---------YAB1                       <---------AHL20(2)  --------->ICU4                       --------->AHL20(2)--------->YAB1                                         <----                       --------->ICU4    <---------ICU4                                    <---------ANAC46                       <---------ATHB51 <---------ATHB12                                   <---------ANAC58 -------DOF2      ----------->GT1       --------->ICU4                                     <---------ANAC58 -DOF2        ---------->DOF2<---------YAB1<---------ATHB12                           --------->ALFIN1   ttttgttttgggaaaaaaaagagaaataattattaaaaaccaataatcattgcatcattctacttataagttataagttgctatcaaggtgtttcgtttt  23449100                                                                      --------->ANAC46                          --------->ANAC58                         <---------ZAT18                   -------->HAHB4                                  --------->ZAT18                   <---------ICU4                                  --------->ZAT14                  --------->ICU4                                   <---------ZAT14                  <---------YAB1                      <---------AHL20(2)               --------->ANAC58                <---------ICU4                        --------->AHL20(2)     --------->ANAC58 <------                --------->YAB1                       <---------AHL20(1)      --------->ANAC58<-------      --------->MYB52(1)  --------->ANAC58           --------->AHL20(2) <---------ZAT14--------->ANAC46 -------GT1  --------->YAB1       <-------TEIL       <---------AHL20(2) --------->ZAT14--------->ANAC58   tctctcccaaacgactaataataatcgaaggccatatacattcgaagattactaatttaatttagtaagttcacttcacacccatagacacacaaccttt  23449200                            <---------AHL20(1)                                                  -----                            --------->ARR11(3)                      <---------ICU4            -------                            --------->AHL20(1)                  --------->AHL20(2)            <------                           <---------AHL20(2)                   <---------AHL20(2)            <------                         <---------AHL20(2)                    --------->AHL20(2)             -------                         --------->AHL20(2)                 <---------AHL20(2)               --------                       <---------AHL20(2)                   <---------AHL20(1)               <-------                       --------->AHL20(2)                   --------->AHL20(1)               <-------                     <---------AHL20(2)                 --------->AHL20(2)                   <-------                   --------->AHL20(2)              --------->AHL20(1)                        --------                   <---------AHL20(2)      --------->ANAC58 --------->AHL20(2)              <--------                 --------->AHL20(2)        --------->ANAC58--------->AHL20(2)  --------->GLK1(2)<----                 <---------AHL20(2)        ----------->GT1 <---------AHL20(2)  --------->ARR14(2)               <---------AHL20(2)  <---------WOX13(1)  <---------AHL20(2)      ------->TEIL ---------    --------->ANAC46 --------->AHL20(2) ------>NtERF2  --------->AHL20(2)      <---------ARR14(2) ----DOF2      --------->AHL20(2)--------->ATHB12  --------->AHL20(2)--------->TOE2(3)  --------->YAB1 --DAG2      --------->AHL20(2) <---------YAB1     <---------AHL20(2)<----------DOF2   <---------YAB1   tcttacatgaaacatatatatatatatatatatattgattgaggcccgaaaaataaaataaataaattaatctttaatctgaatctgttatcaaaataat  23449300     <----------DOF2                                                            <------MYB83     --------->TOE2(3)                                             --------->ATHB12 ---------->AtSPL8                                                 -------->ATHB1 -->ATHB51                                                         <---------ICU4 --ATHB1                                                           --------->YAB1 ---ICU4                                                          <---------ATHB12 ->HAHB4                                                        --------->WOX13(1) ->AHL20(2)                                                    --------->MYB46(3) --AHL20(2)                                                   ------------>CBF<--------P  --------->PCF2 --YAB1                                                       <---------KAN4(2)--------->MYB111(2) --ATHB51                                                 <---------------AtSPL8<------MYB46(1) ->ICU4                                                 ---------->DOF2   <---------TOE1(2) -AHL20(1)                                xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------MYB46(3) -----------AtSPL8                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ATHB12       -- >AHL20(2)   ----------->GT1             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------AtMYB61 --------   tgtactactttaaaaatgaaaaacaaaaacaatagttgtcaaaaaaaaaaaaaaaaaaaaaaggaacaatcattcgtatggttggaggttttgacccaca  23449400                     <-------TEIL                   ------->GAMYB          ----------->GT1       <---------ALFIN1 *TSS                            --------->AtMYB61 -------->DOF2  <---------TOE2(3)     <---------CCA1(2)                    --------->AtMYB61 --->RAV1(1)   ---------->DOF2<---------ALFIN1   <-----------GT1     --------->AtMYB61           <---   aaaaagaagaagttgtttaaagatgcaaacccacacactcgtttcttcatttaactgtctcttcttcaaaaccaaaaccaaaaccaaaaccttctattgt  23449500                                                                                             <-------                                                                                             --------                                                                                     <---------At5g28300                                                                                    <-----------GT1                                                                                 <---------ZAT6  <---                                                                               <------MYB46(1)  -----       --------->ANAC46                           <---------ATERF1(1)          <------MYB83 <--------       --------->ANAC58                   <------ZmHOX2a(1)                   <---------AtMYB61 <----       --------->ANAC58               ---------->DOF2                        <--------P  <---------ANAC46     <---------ALFIN1                <------ZmHOX2a(1)                     --------->ALFIN1--------->ALFIN1 --------GT1<---------YAB1         <---------TOE2(3)    ------>ZmHOX2a(1)  <-----------RAV1(1)<------   ttccctcccacgctataattcatagacataagagaatgaggaaaggacagggctactcctactctgtaatcgcatcggtgttggtgttactgtgtgtggt  23449600                                                                         <-------TEIL                                                                      --------->MYB55(2)                                                                      <---------MYB46(3)                                                                   <---------MYB46(3)                                         <---------RAP2.6(3)       <------MYB46(1)                              --------->ANAC58                     <------MYB83                              --------->ANAC58                    --------->MYB46(2)                              --------->ANAC46                    <---------AtMYB61                           <---------ZAT14                        --------->MYB111(2)   --------->HSFB2a(2)     --------->ZAT14                        --------->MYB55(2) --AtMYB61                 <---------ZAT18    <-----------GT1     --------->ALFIN1 ->ALFIN1                  --------->ZAT18  <----------DOF2       <---------DEAR3(1) ------MYB46(3)    --------->RAP2.6(2)  --------->RAP2.3(3)       --------->MYB111(1) ---->ALFIN1     --------->At4g35610    --------->RAP2.3(2)       <---------MYB46(3) -ZAT14          --------->ZAT2   <----------CDC5                <---------MYB55(1)        --------->ANAC58 -----AtMYB61    <---------ZAT2  ----------->RAV1(2)             <--------P                --------->ANAC58 ---ANAC46       <---------At4g35610    --------->DEAR3(1)     --------->ALFIN1            --------->ANAC46   ggtgtctcgaatcgaatgcagcagccaagtgcacgccctgagccgtctttacctgtctaagcgaggggttggtggttcgtccaccatggacacaagccat  23449700                                                                               --------->LBD16                                                                         ----------->HVH21                                                                        ------>ZmHOX2a(2)                                                                       <------ZmHOX2a(2)                                                                       --------->CCA1(2)                                                                       <---------At4g35610                                          <---------At4g35610         --------->ARR14(2)                                       <---------At4g35610            <---------ARR11(3)             <---------ARR14(2)       --------->ALFIN1                --------->ARR11(3)             --------->ARR14(2)  <---------ANAC46   --------->ALFIN1  --------->AGP1            <------ZmHOX2a(1)   ------>NtERF2   <---------ICU4        <---------AGP1          <---------TOE2(3)     --------->At4g35610===========================HOX2a_HOX2a          <---------TOE1(3)     <---------At4g35610<------ZmHOX2a(1)  <---------ARR14(2)  --------->LBD16      <-------GAMYB<-----------GT1--------->LBD16  ============================HOX2a_HOX2a-----------      --------->At5g28300       <---------LBD16<---------ATHB12      <---------GLK1(1)   --------->LBD16     <---------MYB46(3)      --------->At4g35610<-----------RAV1(2)  --------->GLK1(1)  <---------LBD16    <---------DEAR3(1)       <---------At4g35610--------->YAB1---------->DOF2<---------LBD16---------   ttcaaggcggttaaggatttgaaaccgtcttcgctgcggagtgctgctaatcaggaggggctaagaaagagagatctgatacggagattgcccggacagc  23449800                                                  ------>NtERF2                        <------NtERF2             --------->LBD16                       ------>NtERF2             --------->DEAR3(1)                       <---------RAP2.3(1)      --------->ATERF1(1)                       <---------ERF1<---------WRKY12                      <---------ANAC46<---------DOF5.7(2)                      <---------RAP2.3(2)       <---------LBD16                      <---------RAP2.6(2)      ------>NtERF2                    <---------RAP2.3(1)    <---------ARR14(2)                    <---------ATERF1(1)    ------->TEIL                   <---------DEAR3(1)<---------WRKY38(1)                        <---------HSFB2a(1)                  <---------ZAT14   --------->DOF5.7(2)    <----------DOF2      --------->HSFC1(2)                  --------->SPL7<---------At5g28300        <---------DAG2       --------->HSFB2a(1)                  --------->ZAT14  <-----------HVH21 <---------ANAC58     <---------LBD16        ----     --------->MYB52(2)<---------MYB46(3)  --------->ARR14(2)            <---------ANAC46       <----   <---------MYB52(1) <---------DEAR3(1)   --------->GLK1(2)             <---------ANAC58       <---- >HVH21       <---------ICU4    <---------DOF5.7(2)  <---------ANAC58    <---------ANAC58       ----- >SPL7       <------ZmHOX2a(2) <-----------GT1--------->ANAC46   <-----------GT1<---------HSFC1(2)   ctcccgttagtttcgatcagtacggcggctatgttaccgtcaacgaatccgccgggcgttcctttttctactatttcgtggaagcctctaagtctaaaga  23449900  Previous    Next  AGI:  At3g63470.1    Description:  SCPL40 (serine carboxypeptidase-like 40); serine carboxypeptidase. Identical to Serine carboxypeptidase-like 40 precursor (SCPL40) [Arabidopsis Thaliana] (GB:Q0WRX3;GB:Q84WK3;GB:Q9LY68); similar to SCPL39 (serine carboxypeptidase-like 39), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G52020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40748.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) Range:  from: 23449449    to: 23452035    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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