Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        ----------->HVH21      --------->ATERF1(1)      --------->ALFIN1     <---------ATERF1(1)    <---------bZIP60(2)    <---------ANAC58    <---------ANAC58                                                             <---------ARR14(2) --------->ANAC58                                           --------->DEAR3(1)  <---------ZAT2 --------->ANAC58                                     --------->ANAC46          --------->ZAT2      - --------HVH21                                        --------->ANAC58       --------->At4g35610   <- ---->LBD16          <------ZmHOX2a(2)                --------->ANAC58       <---------At4g35610<---- ->NtERF2           <---------ARR14(2)     <---------------AGL15       ---------->DOF2   <---------ALFIN1 --->DEAR3(1)       --------->ARR14(2)     --------------->AGL15     <---------YAB1  <---------At4g35610 ----ANAC46       ----------->ARR10       ----------------->AG     --------->YAB1--------->ARR14(2)<- ---LBD16  <------NtERF2------>ZmHOX2a(1) ----------------->AGL1  <---------ATHB12   --------->At4g35610 -->ATERF1(1) <---------AtMYB61       --------->ARR14(2)   <---------At4g35610  <---------At4g35610-- >ANAC46 <---------ANAC46             <---------ARR14(2)   --------->At4g35610  --------->At4g35610<-   ggcaggccgtggccgagaggtcgatcctctctggcctccatattcccaatttgtgcaagtcatcgcccatcatcaaagcagcagctctgctacacatttt  23439400   ------->GAMYB  <---------MYB55(2)  --------->MYB46(3) ------>MYB83 -------->P                              --------->AHL20(2) ------>MYB46(1)                    ----------->GT1 -------->MYB55(1)                 ------------------------>ANAC81-------->P --------MYB46(2)               <---------REM1(1)                 ------>MYB46(1) -------GT1    --------->ARR14(2)  <---------TOE2(3)              ------>MYB83 --------MYB111(2)            --------->At4g35610        ---------->DOF2                            < ------->MYB46(3)             <---------At4g35610   ---------->DOF2                 <-------GAMYB  <- --------MYB111(1)        --------->AtLEC2    ---------->DOF2   <---------ALFIN1   <-----------RAV1(1)   accaaccaaagtttcagaatacccgtccatacagatgaaggaaaaaaataaagaaaaagaaaagctccaacctttgggcttcactctgttgcaagttgac  23439500                                                                               --------->WRKY12                                                                               --------->WRKY38(1)                               <---------WOX13(1)                             --------->At5g28300                             --------->ATHB12  <------NtERF2                  <-----------HVH21                            --------->ICU4  <---------LBD16                <---------LBD16                          <---------At4g35610 --------->LBD16           <----------DOF2                        --------->ZAT14     <------NtERF2          ------->TEIL----------->HVH21 ----                        <---------ZAT14     --------->At4g35610 --------->ANAC58              -------   <---------LBD16   --------->LBD16      <---------DEAR3(1)    --------->ANAC58<---------ATERF1(1) ----------DOF2  <---------ARR14(2)  --------->ANAC58        <---------MYB59<---------ANAC46  ------- --------DAG2   <---------GLK1(1)    --------->ANAC58  ----------------------->TaNAC69(2)   ------->TEIL   acctttgggggagaatggataaccggtgaactgattggcaagtctcggcggaacagagttggacctaagcacctctttgcggtgaccccatccgaaccct  23439600                         <---------HSFB2a(2)                         --------->HSFB2a(2)                         <---------LBD16                      <---------ARR14(2)                      --------->ARR14(2)                     <-------GAMYB                    <---------MYB46(3)                    <---------DEAR3(2)                   <---------DEAR3(1)           <-----------ARR10           --------->ARR14(3)                                                                       -           <---------ARR14(3)                   <----------DOF2                             ---------           --------->GLK1(2)                 --------->RAP2.6(2)                            <--------           <---------ARR11(3)           ---------->DOF2     <----------DOF2                 <-------- ------>DOF2    <---------DEAR3(1)  ---------->DOF2         ------>ZmHOX2a(1)            <------ZmHOX2a(1) -->TOE2(3)--------->ARR14(2)     --------->ANAC58          <---------DAG2  ----------->HVH21-------- -->TOE1(3)--------->ARR11(3)     --------->ANAC58   --------->HSFB2a(2)    <---------YAB1-----------   aaatcggactcaaaatcttcggcggttctcggagtcaagaaagaaagccgctcttcgaggtcctttttggccttggctatgacagaatgaaggagattct  23439700                                                 ======================HOX2a_HOX2a                                                 <------ZmHOX2a(1)                                              <------ZmHOX2a(1)                                         ==============================HOX2a_HOX2a        --------->At4g35610              ------>ZmHOX2a(1)     ---------->DOF2                   ==============HOX2a_HOX2a   --------->ANAC58       ====================HOX2a_HOX2a       ------>ZmHOX2a(2)              ------   --------->ANAC58       ------>ZmHOX2a(1)   =========================HOX2a_HOX2a             <----- ----->NtERF2        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       --------->ARR11(3)            <-------- >ARR14(2)         --------->YAB1      =================HOX2a_HOX2a          <---------At4g35610   <- -GLK1(2)     --------->TOE2(3)        ------>ZmHOX2a(2)      <---------ARR11(3)         --------->ARR11(3) -ARR14(2)    --------->TOE1(3)      --------->ARR11(3)      --------->YAB1  --------->At4g35610   -- ->GLK1(2)    <---------DAG2         <---------ARR11(3)<---------ARR11(3)    --------->ZAT2 --------- >ARR10 <---------At4g35610    <---------At5g28300     --------->ARR11(3)    <---------ZAT2<---------LBD16   gaggcccgaaagctaaccttatcatctccttctcaccgtgatcctgaaggaggagaagacctatgatcttggaagcattagctgggtctaagttctggat  23439800           <<<<<<<<<ARR1          <---------ARR14(2)          <---------ARR11(3)          --------->ARR14(2)        --------->ANAC58        --------->ANAC58     --------->ZAT18   <---------ANAC46 --->ARR14(2)         --------------->AtSPL8 ----GLK1(2)  ------>ZmHOX2a(1) -HSFB2a(2)<<<<<<<<<ARR2           --------->AtLEC2                <---------CCA1(2) --------HSFB2a(2)  <---------ANAC58                         --------->ARR11(3)                     - ------->HSFB2a(2)  <---------ANAC58                         <---------ARR11(3)              <------- >HSFB2a(2)<------ZmHOX2a(2)    <-------TEIL    <----------DOF2    ---------->ID1  <----------DOF2  -   tctagagagcacgatcctagttgcttcgtacacatccatggaaacacactctttgctcgatgagaccttgtctctctctctctcgcttaatctttctttg  23439900                                    --------->ZAT18                                    <---------ZAT18           <---------ANAC46                                 <---------ANAC46        <---------ANAC58                               <---------ANAC58          <---------ANAC46    ---------->DOF2            <---------ANAC58     <------MYB46(1) <------ZmHOX2a(1)        <---------ANAC58    --------->ARR11(3) -------->ANAC58          <---------ANAC58    <---------ARR11(3)                   ---------->DOF2 ---DOF2            <-----------RAV1(1)   ---------->DOF2<---------ANAC58  ---------->DOF2   <------- -------->ANAC58  <------------CBF <---------ANAC46 <------MYB83     <----------DOF2     <----------DOF2   gcaggaaaaagaaacactgctattgttgtcttgtcttgtgtacaaaaagatgtttggtttcttgtcttggactttagcaaagctaaaaaggctttctttc  23440000                                             --------->ANAC58                                             --------->ANAC46                                             --------->ANAC58                                           <---------ALFIN1                <---------ICU4            --------->ZAT14             --------->AtMYB61            <---------ZAT18         --------->MYB46(3)               <---------ZAT14     <---------MYB59                    --------->ANAC46     --------->TOE2(3)                  --------->ANAC58     <---------DAG2                     --------->ANAC58  ------->GAMYB --------->YAB1        <---------ALFIN1        <----------DOF2            <---------ANAC58 <---------MYB111(2)                  --------->ZAT6     <---------HSFC1(2)          ------>ZmHOX2a(1) <---------MYB46(2)               --------->ZAT14        --------->HSFC1(2)       ------>ZmHOX2a(1) --------->MYB46(3)               <---------ZAT18    --------->TOE2(3)      <<<<<<<<<TBF1<---------ANAC58 ---DOF2-------->P                <---------ZAT14    <---------MYB59     <<<<<<<<<TBF1  --------->ZAT2   tcaactaccttaccaccatcatcactctagtaccagtgtaccactccactccatacctaagcttctttctacttcttcttcttcctcctctgcttgcaaa  23440100                                   <---------ANAC46                                <---------ANAC58                                <---------ANAC58                                <---------ANAC46                                    <---------ANAC46                                --------->ALFIN1                                 <---------MYB52(1)                              <---------ANAC58                                  =====================                             <---------AtMYB61                                  <---------ZAT14                             --------->ALFIN1                                   <-------GAMYB                           <---------ANAC46                                    ======================RAV                         <---------ANAC46   <---------AHL20(2)             ----------->HVH21                         <---------ANAC58  --------->AHL20(2)            <---------ANAC46                         <---------ANAC58  <---------AHL20(2)          --------->ZAT14                  <---------O2<---------ANAC46  --------->AHL20(2)     --------->ZAT18                  --------->O2<---------ANAC58 --------->AHL20(2)      <---------ZAT14                  ==============================================bZIP_DOF <---------ANAC58                  <---------TGA1a <---------ANAC46           ---------->DOF2   <-----------RAV1(1)<-- ===========================bZIP_DOF ----------->GT1     ----------->GT1 <---------ANAC58  --------->HSFB2a(2) ---------->DOF2  --------->TGA1a --------->ALFIN1   ---------->DOF2  --------->ALFIN1   ----------->RAV1(2)   aatcaaagttgccacttccctcgtgagtcgtgtggtgtggggaaattaaataaaaaaaagagttaaagaagagtggagtgactgttgtgtcttctgggct  23440200                  <---------WRKY12                  <---------WRKY45                  <---------WRKY38(1)                <-----------HVH21                <---------PCF2               <------MYB46(1)             --------->ALFIN1       <---------O2       --------->O2---------->DOF2       =======================bZIP_DOF       --------->TGA1a       <---------TGA1a <----------ID1  ------->GAMYB<------MYB83                    --------->YAB1            <---------ALFIN1           -  ===============MYC_MYB                       --------->AHL20(2)      --------->ANAC58         <---- ================MYC_MYB<-----------HVH21     <---------ATHB12         --------->ANAC58         ----- -------ALFIN1<---------MYB46(3)            --------->WOX13(1)         <---------ALFIN1     ------->TEIL   ccaactcccaagtgagtgggtcaaagcgtcaaactttggatttttgcaatcaaattcacaacaaaacacacacacacactctctctctctcatgtatttt  23440300  Previous    Next  AGI:  At3g63450.1    Description:  RNA binding. similar to zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G51950.1); similar to zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G51950.2); similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14273.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 23437724    to: 23439839    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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