Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         ----------->RAV1(1)                       ------>NtERF2                       <---------DDF1                      --------->RRTF1(2)                      <---------ETT(1)                      ----------->HVH21                      --------->DEAR3(1)                      --------->RAP2.3(2)                      --------->RAP2.3(3)                      --------->At1g77200                      --------->DREB2C(2)                      --------->RAP2.6(2)                      --------->DEAR4(1)                      --------->RRTF1(3)                     --------->DEAR3(2)                     --------->RAP2.3(1)                     --------->ERF1                     --------->ATERF1(1)                     <------NtERF2                     --------->ORA47(2)                     --------->RRTF1(1)                    <---------ATERF1(1)                    ------>NtERF2                    --------->At4g35610                    --------->ABI4(1)                    <---------At4g35610                   --------->RAP2.3(2)                   --------->RAP2.6(2)                   --------->RRTF1(3)                   <---------DEAR3(1)                   --------->DEAR3(1)                   --------->ATERF1(2)                   --------->RAP2.3(3)                         ------>NtERF2                   <---------ATERF1(2)                       <---------MYB52(1)                   --------->RRTF1(2)                    --------->CCA1(2)                  --------->ORA47(2)                     --------->ARR14(1)                  --------->RAP2.3(1)                    <------ZmHOX2a(2)                  --------->ATERF1(1)                   <---------ARR14(2)                  --------->RRTF1(1)                    <---------ARR11(3)                  --------->RAP2.6(1)                   --------->AGP1                  --------->DEAR4(2)         --------->LBD16<---------At4g35610                 <---------ATERF1(1)       <---------LBD16------>ZmHOX2a(2)                 --------->LBD16         <---------ARR14(2) ----------->RAV1(2)                 <---------RAP2.3(1)     --------->ARR14(2) --------->At4g35610           ------>ZmHOX2a(1)             <---------ARR14(2)        <---------TOE1(2)--------->ARR14(2)            --------->ARR14(2)             --------->ARR14(2) --------->AtMYB61       --------->ARR11(3)            <---------ARR14(2)    <---------ZAT6--------->ERF1<---------ALFIN1       --------->GLK1(1)             --------->GLK1(1)  ----------->GT1------>NtERF2 --------->MYB46(3)  <---------ANAC46                  <---------CCA1(2) ---------ZAT14  --------->At4g35610--------->ANAC58   <---------GLK1(1)           --------->YAB1 -------->ZAT14  <---------At4g35610--------->ANAC58  ----------->ARR10       <---------CCA1(2)   agagtagtgaaaccagttccgccgccgacatcgaccactcgcatgtccggatggctgagatccgctggctcaagagcgtcgtctctcatatcctcggtcc  23427700                                                                                                    <                                                                                                   <-                                                                                                  <--                                                                                           --------->DEAR3(1)                                                                                         ------>NtERF2                                                                                      <---------ATERF1(1)                                                                                  <---------TOE2(2)--                                                                                  <---------TOE1(2)<-                                                                                ---------------------               <---------bZIP60(2)                                              --------->TOE2(2)<---            ----------->HVH21          --------->GLK1(2)             <---------At4g35610 <---------RAP2.3(1)        <---------WOX13(1)             ------->TEIL                  --------->At4g35610<---------ANAC46      <------ZmHOX2a(1)               --------->ARR11(3)      ------>ZmHOX2a(1) --------->TOE1(2)<---   <-----------RAV1(2)  --------->ARR14(2)             --------->ANAC58        <xxxxxxxxxxxxxxxxxxxxx   <---------LBD16      <---------ARR14(2)             --------->ANAC58       ------->TEIL<------NtERF2   aatgcccaggattgatgacatggtcgtatacgatggataagaacctgtagaaccagtaagcctccttcttgtgctgaatgaacctaggttgcgccgatgg  23427800                     --------->At4g35610                     <---------ZAT2                     --------->ZAT2                     <---------At4g35610                  --------->At4g35610                  <---------At4g35610           --------->ANAC46                                                                    ------           --------->ANAC58                                                                    <-----           --------->ANAC58                                                               <---------ARR14(2)         <---------ALFIN1                                         --------->MYB52(1)     ============        <---------REM1(2)                                        <--------P              <------ZmHOX2a(1)      --------->ANAC46                                        <---------HSFB2a(2)     <------NtERF2      --------->ANAC58                                      <-------TEIL           <------NtERF2 ------NtERF2    <-----------RAV1(1)                       <---------ARR14(2)     <---------SPL7 --------HSFB2a(2)<---------ZAT2                           --------->ALFIN1       <---------DEAR3(2) -------LBD16  <---------ZAT2                              --------->ARR14(2)    --------->ETT(2) ------->LBD16 --------->At4g35610   ------>NtERF2   <---------AtMYB61           <---------DEAR3(1) -----NtERF2   <---------At4g35610  --------->DEAR3(1)    <---------SPL7         <---------DREB2C(2) >WRI1--------->ANAC58    ------->TEIL<------NtERF2--------->ALFIN1              <---------RAP2.6(2) ------LBD16   --------->ZAT2      --------->MYB46(3)--------->ALFIN1           --------->RAP2.6(3) ------ANAC46 <-----------RAV1(1)  --------->ATERF1(1)   <---------MYB46(3)    <-----------HVH21 ---- xxxxxsmallRNA(fl3) <-----------RAV1(1)     --------->GLK1(2)<---------ANAC46--------->MYB59   <-----   ccgggaagacgacacgctgctgctgctgcatctagtagccaccgagagtctaggtgtggaggttcgggtaactgagagtaaggtcggccgaggaatcgat  23427900   --------->AtLEC2   xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->ANAC58   --------->ANAC58                                                                  --------->MYB46(3) <---------ANAC58               <----------DOF2                                     <------ZmHOX2a(2) <---------ANAC58        <---------MYB59               --------->WRKY38(1)         --------->ARR11(3) <---------ANAC46        --------->TOE2(3)            <---------MYB52(1)           <---------ARR11(3) --->ARR14(2)            --------->TOE1(3)            <----------CDC5              <---------ARR14(2) ----AGP1             --------->ARR14(2)         --------->PCF5                    --------->AGP1 ===HOX2a_HOX2a       <---------ARR14(2) <------MYB83<-------GAMYB                 --------->ARR14(2) -->ZmHOX2a(2)    --------->LBD16        <------MYB46(1)       ---------->DOF2    --------->At4g35610 ----ARR14(2)   <-----------RAV1(2)<---------LBD16 <------NtERF2             ----------->HVH21   ctggcatgcaaattggaaccaggggaacctaaacctttggggaaggtaatggccccgttgagcatcaaagaggccatcgatgacagatccaccaagttga  23428000                                         --------->YAB1                                        <---------ATHB12                                   --------->LBD16                                   ------>NtERF2                                  --------->ANAC46                    --------->WOX13(1)--------->WOX13(1)         ----------->GT1              *TSS --        >>>>>>>>>TBF1            <---------LBD16                 --------->ALFIN1  --------->ZAT6<---   gaagagggaagaagaagcttatctatcaccaattctccgccaatcaaaaacacaaacgagaatgagagtgtgactaaaccctctaactctaacagagtca  23428100                                       <-------GAMYB  --------->ARR14(2)                                      --------->MYB52(2)                    <---------------AtSPL3            <---------ARR14(2)                    <---------------AtSPL8           --------->GLK1(1)           <---------ALFIN1           <---------MYB46(3)           ------->GAMYB              <-----------RAV1(1)          --------->MYB46(3)    --------------------->WRI1 <----------DOF2         ------>MYB83          <---------O2          <---------GLK1(1)         ------>MYB46(1)------->TEIL<---------ANAC46 <---------CCA1(2)                   <-----------         -------->P<------------------SPL14    ----------->RAV1(1)                      <------------ATHB5 ------->ZAT14------->MYC3     --------->O2<---------ETT(1)<---------MYB52(1)          --------->ICU4 ------ZAT14  <-------MYC3 <-----------HVH21  --------->REM1(1)                     <---------AtLEC2   gtactgactccaaccacatgtttatgtacggtcacgttgtttgttgcgacaacacatatccctttgttgagcccatgggctcatttgcaagaattggccc  23428200                                               *TSS                                             --------->DAG2              <----------DOF2               ---------->DOF2             <---------ANAC58<---------------AGL15                                          <--------             <---------ANAC58--------------->AGL15                                          <--------    --------->YAB1          <-----------------AGL2                                         <--------- --------->YAB1             <-----------------AGL1                              ------>NtERF2   ----- -CBF  <------------CBF     <-----------------AGL3       <-----------HVH21     --------->ANAC46 -----   aaataatagtattgggcgttttggcatttttctgcaaatggaagggaaaagtcgatttgagtcagagagagagagacttcgacgacaattcaaacttgta  23428300                                 =====================================HOX2a_HOX2a                                 ------>ZmHOX2a(2)                                 ===========================HOX2a_HOX2a                                <------ZmHOX2a(2)                                ============================HOX2a_HOX2a                                --------->CCA1(2)                               <---------ARR11(3)                               --------->ARR11(3)                               <---------ARR14(2)                               <---------AGP1                               --------->ARR14(2)                               --------->AGP1                              <---------CCA1(2)                 <---------ARR14(2)                          <-----------HVH21                    <------ZmHOX2a(1) -------AtSPL3        <---------bZIP60(2)                <---------ANAC58              <------ZmHOX2a(1) -------AtSPL8       <---------TOE2(3)                <---------ARR14(2)            <------ZmHOX2a(1) ---------SPL14    ----------->TGA1       --------->ZAT2 <---------ANAC58        <-----------RAV1(2) ---->SPL7 <---------GLK1(2) ----------->ARR10        --------->ARR14(2)        --------->ZAT2 ---->SPL1(2)      ----------->HVH21----------->HVH21<------ZmHOX2a(1) <---------MYB46(3)           <   cggactaagaccagactctctctgacgttgtcagatctgcgacctgctagcgagaggatgcgagaggaaactgtggtttacgagcaggaggagtctgttt  23428400            --------->ANAC58            --------->ANAC58         <------NtERF2        ------>NtERF2              <---------WRKY18(1)       <---------PCF2           <---------ANAC58      --------->ATERF1(1)       <---------ANAC58      <------NtERF2            --------->ZAT2     <---------RAP2.3(1)      --------->ARR11(3)     <---------MYB46(3)       <-----------ARR10     <---------ATERF1(1) --------->AtLEC2     ------>NtERF2     <---------ANAC58    <---------DEAR3(1) <---------ANAC58    <---------ANAC46  ===================================HOX2a_HOX2a                   <---------CCA1(2)    --------->ALFIN1  ------>ZmHOX2a(2)                                <---------At4g35610 ==========   <---------LBD16   ====================================HOX2a_HOX2a   --------->At4g35610 <--------- <---------O2        <------ZmHOX2a(2)            <------ZmHOX2a(1)  <--------P       <---------ARR14(2) --------->ANAC46   <---------ARR14(2)     --------->WRKY12  <---------ANAC58         --------->ARR14(2) --------->O2       --------->ARR14(2)     --------->WRKY38(1)       ================================ --------->TGA1a    --------->ARR11(3) <------NtERF2         <---------ANAC46         <---------ARR11(1) <---------TGA1a    <---------ARR11(3) --------->LBD16       <---------ANAC58         ------->TEIL ---------LBD16    <------ZmHOX2a(1) <---------LBD16      <----------DOF2            <---------CCA1(2)   ctcacggcgggggcaagcacaggatccttgcagagcttgcccgcgttgaacaggaagtcgctttcttggaggtagctaaactaactcgtatctctttcaa  23428500               <---------O2               <---------ANAC46        <------MYB46(1)        <------MYB83                                                                     ----------->HVH21       <---------TOE2(2)           <----------DOF2                                     ------>ZmHOX2a(1)    <---------TGA1a                ------>ZmHOX2a(1)                                   ==============    --------->TGA1a                ===============HOX2a_HOX2a <------MYB83             ==============    --------->O2                <---------YAB1                <------MYB46(1) >>>>>>>>>ARR2    <---------ANAC46           <-----------GT1               --------->MYB46(2)      <---------ANAC58    ==========================================bZIP_DOF       <---------TOE2(3)>>>>>>>>>ARR1  --------    <---------O2              --------->YAB1         --------->REM1(1)      <---------YAB1 ---------- =============bZIP_DOF <---------At4g35610      ----------->GT1  ---------->DOF2     <---------ANAC58 -DOF2 <---------TOE1(2)     <---------ATHB12   <---------ICU4<---------ANAC55(2)    <---------ANAC46 =============MYC_MYB  --------->At4g35610 <------ZmHOX2a(2) --------->MYB59<---------TOE2(3)--------   attccgacgtaggtctctcgtggatagctcaattatcctttttagatcaattgttacaacaattaggtaaaggtcgctaagattgtttcctgtgaaagca  23428600  Previous    Next  AGI:  At3g63410.1    Description:  APG1 (ALBINO OR PALE GREEN MUTANT 1); methyltransferase. similar to MPBQ/MSBQ methyltransferase 2 [Helianthus annuus] (GB:ABB52807.1); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) Range:  from: 23426564    to: 23428094    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g63420.1    Description:  AGG1 (ARABIDOPSIS GGAMMA-SUBUNIT 1). similar to AGG2 (G-PROTEIN GAMMA SUBUNIT 2) [Arabidopsis thaliana] (TAIR:AT3G22942.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71267.1) Range:  from: 23428247    to: 23429615    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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