Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->ARR11(3)                       <----------DOF2    <---------PCF2     <---------ARR14(2)                      <---------DAG2   ----------->HVH21  <---------CCA1(2)                  <------ZmHOX2a(1) --------->ALFIN1   --------->YAB1                   <---------O2                           --------- -->DAG2          <---------ARR11(3)                 --------->O2                       <-------TEIL -->DOF2    ----------->GT1<---------ANAC46      <-----------HVH21             <---------ANAC46   tgagtgggacagggttgcaaaatcatatctcgtgagaagaacaacattctatgtcacgaggactacctttgggaatcgaggtcgtatagatgcatgagtg  23402100                                                ----------->GT1                                              ---------->DOF2                  <---------At4g35610      <------ZmHOX2a(1)       <---------ANAC58                   --------->LBD16       <---------ANAC58                 <---------HSFB2a(2)      --------->At4g35610           <---------ANAC46      <---------At4g35610           <---------ANAC58                                         --------    <--------P    --------->At4g35610   --------->HSFB2a(2)                             --------->ANAC58  <------MYB46(1) <---------ZAT2    <---------ANAC58                                    --------->ANAC58  <------MYB83  --------->ZAT14=====================RAV --------->ALFIN1      ---------->DOF2<------- --------->MYB59<---------ZAT18<-----------RAV1(1)--------->AHL20(2)      ----------->RAV1(1)-------- >ATHB12<----------DOF2------>ZmHOX2a(1)<-----------RAV1(2)  ----------->GT1--------->MYB46(3)   aatttggtagctttccagtgagctccttagaaaatgttgcgtccaggagaaagtaaatgtggagagcaaaataatccaacaaaagttgtgaagccatctc  23402200                               --------->At4g35610                               --------->ZAT2           <---------ALFIN1    <---------ZAT2          --------->MYB46(3)   <---------At4g35610    <---------At4g35610 ---------->DOF2                  <---------AtMYB61    --------->At4g35610<---------WRKY12      ------->GAMYB  <---------ANAC58    <------NtERF2          --------->AtMYB61                            <---------CCA1(2)  <---------ANAC58   <---------RAP2.6(3)    --------->MYB46(3)                       --------->YAB1 ->bZIP60(2)         <-----------HVH21     ------>MYB83<----------DOF2              <---------ATHB12 --At4g35610        --------->RAP2.6(2)    -------->P  ------>ZmHOX2a(1)    <---------ANAC58 ->At4g35610  <-----------RAV1(1)          ------>MYB46(1)                  <---------ANAC58    <----   actggcttctgaaccactgtggccgtcaaagacagctgcgattccaaccaaaacatcctttggtgttccagtcttcttgcctgcgaatcatcttatcttg  23402300                                                                                                   --                                                                                                  ---                                                                                               ======                                                          ---------->DOF2                      ======                                                       --------->LBD16                        <------                                      --------->ANAC58<---------LBD16     <------ZmHOX2a(2)   -------                                 <------ZmHOX2a(2)   <-----------------AGL1     --------->ZAT18<-----                                --------->ARR14(2)   <---------LBD16      ===========================                                <---------ARR14(2)  --------->MYB52(1)    ===========================   --------->AHL20(2)    <----------DOF2        <-------TEIL             <---------ARR11(3)   ------- -----LBD16        <---------GLK1(2)  --------->ANAC58<---------ANAC46   --------->ARR11(3)   <------   gggaataaaaaaaaaacagttgattctctttggcgatcccaaggcaacgatgcataccgggaaagggaatgcgaagatcaagggcacagagaagacgatc  23402400                                 --------->SPL7                              <---------ANAC46                            <------------------SPL14                            ------>NtERF2                            <---------ATERF1(1)                           --------->RAP2.3(2)              <---------HSFC1(2)                           --------->ANAC46                 --------->HSFC1(2)                           --------->RAP2.3(3)         ================HOX2a_HOX2a           ------>ZmHOX2a(1)--------->ABI4(1)          <------ZmHOX2a(1) --------->LBD16           ------------------>SPL14  --------->ALFIN1     --------->LBD16 ------>ZmHOX2a(1)         --------->DEAR3(1)     --------->ALFIN1       --------->HSFB2a(2) --------->RAV1(2)         <---------DEAR3(1)    <------NtERF2--------->ARR14(2)   --------->LBD16 --->ZmHOX2a(1)           --------->RAP2.3(1)    --------->ATERF1(1)     <---------HSFB2a(2) =======HOX2a_HOX2a       --------->ERF1--------->MYB46(3)  <---------HSFB2a(1)   <---------HSFB2a(2) =================HOX2a_HOX2a--------->RAP2.3(1)<---------MYB46(3)      <---------LBD16 ---ARR11(3)              --------->ATERF1(1)   --------->LBD16       --------->GLK1(2) -->ARR14(2)              --------->DEAR4(2)   <---------ANAC58       --------->ARR14(2) -ZmHOX2a(2)  ------>NtERF2--------->RRTF1(3)  <---------ANAC58 <---------DEAR3(1)--------->HSFB2a(2) ====HOX2a_HOX2a          --------->ORA47(2)   <---------ANAC46 ------>ZmHOX2a(2)----------------->AGL1 =======HOX2a_HOX2a      <---------ATERF1(1)   <---------DEAR3(1)     <---------ARR14(2)            < -->ARR11(3) --------->DEAR3(1)<---------SPL7 <---------LBD16 <---------ARR14(2) <-----------------AGL1 ---ARR14(2) <---------ALFIN1<------NtERF2  ----------->HVH21<------ZmHOX2a(1) --------->GLK1(2)    -   ctcctggtatttcctccgcccttgaatcgccgccgtatggcaacgactggcgggggaggagaaggatcggcgattctggagattccagagagggcaattg  23402500                                                                      ----------->GT1                                                                 <---------DOF5.7(2)                                                               <------NtERF2                                                              ------>NtERF2                  <---------At4g35610                         --------->RAP2.6(2)                  --------->At4g35610                        --------->ANAC46                  --------->ZAT2                            --------->At4g35610                  --------->GLK1(1)                         <---------LBD16                <------NtERF2                               --------->LBD16               --------->LBD16                              <---------At4g35610             <---------LBD16                               <---------ANAC58            --------->MYB52(1)                             <---------ANAC58   ------>ZmHOX2a(2)           ----------->GT1            <---------LBD16  <------ZmHOX2a(2)         --------->ARR14(2)          --------->GLK1(2)                           - <---------ARR14(2)    ----------->RAV1(1)              --------->ARR14(2)                          < --------->ARR14(2)   <---------ALFIN1                 <---------ARR14(2)                --------->TOE2(3) ---------GLK1(1) <---------ZAT2                       <---------GLK1(2)                 --------->YAB1 -------->GLK1(1) <---------GLK1(1)                    --------->ARR14(2)   --------->ZAT6      -----   ggagatcggaaaactgccggagctccaccatatttgtaaatactcaaacaggttgaagattccgcggcaacgttgttaatactaactacaacgataaata  23402600                                                                                               <-----                                                                                               ------                                                                                             ------>MYB46(1)                                                                                             --------                                                                                             ------>MYB83                                                                                             --------                                                                                           <---------MYB46(2)                                                                                           --------->MYB46(3)                                <---------ARR11(3)                          --------->ANAC58---------                               --------->GLK1(1)                            --------->ANAC58---------                --------->ARR11(3)                                        <---------ALFIN1 <---------MYB111(2) --------->CCA1(2)         --------->MYB46(3)    ----------->GT1       <-----------GT1  <-----------GT1 -------->ARR11(3)      --------->MYB46(3) <---------MYB52(1)    <---------TOE1(2)  --------->AHL20(2) ---------ARR11(3) <----------DOF2        <-------GAMYB          --------->ARR14(2) <---------AHL20(2) ----->DOF2     <---------ARR11(3)  --------->At4g35610          <---------ARR14(2)<---------AHL20(2)   aagataccaaaatttcaacatctttcacaaccgatatcatcttccgttaagaagaaaaaacaactcgtattttctaccacgcttatttatttaccaaccg  23402700                       <---------ICU4 ----MYB59             --------->ATHB51 ->GAMYB               --------->YAB1                                                      <---------DAG2 >P  <------ZmHOX2a(1)--------->ICU4                                                       <--------- ->MYB52(1)           <---------ATHB51   <-----------GT1   ----------->GT1           ----------->GT1 >MYB52(1)        ------------>CBF    ----------->GT1     --------->YAB1      --------->ARR11(3) >MYB55(1)    <-----------GT1 ----------->RAV1(1)      --------->YAB1---------->DOF2<---------TOE2(3)   aattttaggacttaatttacaacaattatggacaacaaattagttacaaaatgtgactaataagaaaaaaaaaaagaagacatcttgaggtaactttatt  23402800                                                                                            ---------                                                                                           <---------HSFC1(2)                                                                                           --------->HSFB2a(1)                                                                                           <---------HSFB2a(1)                                                                                           --------->HSFC1(2)                                                                                          <---------ARR11(3)     ---------->DOF2                    --------->TOE2(3)                                 <---------- --------->ANAC58         <---------AHL20(2)                                              <---------ARR14(2) --------->ANAC58        --------->AHL20(2)                                               --------->ARR14(2) --------->ANAC46   <-----------TBP     --------->TOE1(2)----------->RAV1(2)              --------->GLK1(2) -DOF2 <----------ID1 --------->YAB1 <---------ALFIN1   -------->P <----------DOF2       <---------GLK1(2)   tacaaggaaaagacaagaggctatttataaaatcgtccacaaccttggattggatggctacctgcttccctttgatgtctctgcaagttcagaatcttcc  23402900                                                                                               <-----                                                                                             <-------                                                                                             <-------                                                                                          <----------                                                                                       <---------ICU4                                                           <---------ICU4             <---------YAB1                                                           --------->YAB1            --------->AHL20(2) <---------ANAC58                            <---------AHL20(2) <---------ANAC55(2)  <---------AHL20(1) <---------ANAC58   ------>ZmHOX2a(1)      <---------AHL20(2)   --------->ANAC55(2)  <---------AHL20(2) >KAN4(2)   --------->TOE2(3)       <---------At4g35610   <---------ATHB12          --------->YAB1 -ARR10  <-----------GT1         --------->ZAT14<---------AHL20(2)                 <---------YAB1  <-   cttgctcgttttaaccttgttcctacataatccactgtagctcatattattttatattcaaacattacatactagagtttgacttattataatttccgtt  23403000  Previous    Next  AGI:  At3g63320.1    Description:  protein phosphatase 2C-related / PP2C-related. similar to protein phosphatase 2C-related / PP2C-related [Arabidopsis thaliana] (TAIR:AT3G63340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22595.1); contains InterPro domain Protein phosphatase 2C-related; (InterPro:IPR001932); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR015655); contains InterPro domain Protein phosphatase 2C, N-terminal (InterPro:IPR014045) Range:  from: 23400813    to: 23402531    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g63330.1    Description:  protein kinase family protein. similar to AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT4G24740.1); similar to AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT4G24740.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO22593.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR015655); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 23402603    to: 23405738    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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