Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   ----------->AGL15 ----->ATHB12 ------------AGL15 ------------>AGL2 ---->MYB46(3) -----ATHB12 >MYB46(1) >MYB83 -->P                                                                      --------->TOE2(3) ->MYB46(3)                                                                --------->TOE1(3) --MYB111(1)                                                      ---------->DOF2                   - ->AtMYB61                                                       --------->YAB1                     - >DEAR3(2)                      <---------DAG2                  <---------ATHB12                    - >MYB46(3)                   <---------ALFIN1                 --------->WOX13(1)        ----------->GT1 -MYB55(2)        <----------DOF2<----------DOF2            <---------ATHB12          <---------TOE1(2) -MYB52(2)--------->YAB1    --------->MYB46(3)            --------->WOX13(1)         ------>ZmHOX2a(1)   cattgatggaaatgagaatgctttacttcatccacctttagagtacccatggcatttactcaatcaatcaaagtaaacctaaaaatcctagggtttattc  23383300                                   ----------->RAV1(2)                                   --------->At4g35610                                   <---------ZAT2                                   --------->ZAT2                                   <---------At4g35610                                 <-----------RAV1(2)                                         <-------                                --------->LBD16                                              --------                               --------->ANAC58                                          --------->SPL7                               --------->ANAC46                                        <---------SPL7            ---------->DOF2    --------->ANAC58                                       <---------ANAC58  <---------------AGL15       <---------LBD16                                         <---------ANAC58  --------------->AGL15    <-----------HVH21                       ------->GAMYB  <---------At5g28300 ----------------->AGL3 <---------ANAC58                        ----------->RAV1(1)  <---------At4g35610 -------->ANAC58        <---------ANAC58                    ----------->HVH21    <-----------GT1 -------->ANAC58    --------->ANAC58                  <---------GLK1(1)      <------ZmHOX2a(1) -------->ANAC46    --------->ANAC58                  --------->GLK1(1)  ---------->DOF2--------->MYB52(1)   acacccaaaataagaaaagcacaaggccttgtcccgcagctggacgttggattcagatttcactgacaacagaagaaaaggatttactgcttacggtgtg  23383400                                                       --------->At4g35610                                                     ------>ZmHOX2a(2)                                                    <------ZmHOX2a(2)                                                    --------->CCA1(2)                                                   --------->ARR14(3)                                                   --------->ARR14(2)                                                   <---------ARR14(2)                                                   <---------ARR11(3)                                                   --------->ARR11(3)                                                   --------->AGP1                                                 ----------->ARR10                                             <-------GAMYB                                            <---------MYB46(3)                   --------->ANAC58         ------>ZmHOX2a(2)                   --------->ANAC58       <---------ARR11(3)                 <---------bZIP60(2)      --------->ARR14(2)              ----------->HVH21           --------->ARR11(3)                      --------->ANAC58            <---------At4g35610          ==================HOX2a_HOX2a            --------->ANAC58        <------ZmHOX2a(1)                <------ZmHOX2a(1)                  <-------GAMYB    --------->ALFIN1                     ===================HOX2a_HOX2a<---------GLK1(1) --ANAC46   --------->At4g35610    --------->LBD16<---------GLK1(1)<---------HSFB2a(2)           <--- ->ALFIN1   ----------->GT1 ---------->ID1<---------ARR14(2)       --------->HSFB2a(2)          <----   aatgaggtgaggagaggtgacaaggcatttggcgctccagagaggatcgttgagatctgctccatgtctctcgaactccgttgcaagccctccgtctatt  23383500                                                                                       ------>MYB83                                                                                       ------>MYB46(1)                                                                                     --------->MYB46(3)                --------->At4g35610                                              <------ZmHOX2a(2)         ----------->RAV1(2)                                                    <-----------HVH21         <------NtERF2    <---------ARR11(3)                                 --------->DEAR3(2)        ------>NtERF2     --------->ARR11(3)                              ----------->HVH21        --       --------->DEAR3(1)<---------GLK1(1)            <-----------HVH21  --------->TOE1(1)      <----      --------->RAP2.3(1)--------->GLK1(1)         <---------LBD16       --------->TOE2(1)   ------->GAMYB    --------->ARR14(2) <------ZmHOX2a(1)         --------->GLK1(2)<-----------HVH21  <---------MYB55(2)    <---------ARR14(2)--------->LBD16            <---------ARR14(2)   <------NtERF2 --------->ANAC46  ---------->DOF2   <-----------RAV1(2)          --------->ARR14(2)   --------->ATERF1(1)--------->MYB46(3) ------At5g28300<---------At4g35610       ---------->DOF2        <-----------RAV1(1)--------->ANAC58< -------GT1   <-----------------AGL1 ----------->GT1 --------->LBD16 ------>NtERF2  --------->ANAC58-   accgcatagccgcctgtctgcttcaggaaatctttcatcgagttaaaagagtttccggtcatcttgtatgtcgcctcggaccgatcacccaacaactccc  23383600           <---------ANAC46         <---------ZAT14       --------->REM1(2)       --------->ZAT18       <---------ZAT14       --------->ZAT14                                          <----------DOF2    <---------ANAC58                                         <---------ARR11(3)    <---------ANAC58                                         --------->ARR11(3)                     -    <---------ANAC46                                   --------->ANAC58                             < --------->HVH21       <---------------------WRI1      --------->ANAC58                      <------MYB83 -----ALFIN1 <---------ANAC46                          --------->ANAC46                      <------MYB46(1) ---------ZAT14      --------->TOE2(2)    <---------ZAT14--------->YAB1 --------->ICU4      <-------- -------->ZAT14      --------->TOE1(2)    --------->ZAT14*TSS--------->GLK1(2)         <------------CBF   actgaagcgtgtactgtgtgaaacatacgataaacacaaaaaactgtagagagaaacactcaaaatctttagtactaattttgtttacaaattgtaggtt  23383700                           --------->ARR14(2)                           <---------ARR14(2)     <---------CCA1(2) --------->ZAT6   <---------DAG2<---------------AGL15  <----------DOF2   <----------DOF2   --------->YAB1  <---------ATHB12                                     <---------MYB52(1) -------->ARR11(3)   <-----------GT1--------->ARR14(2)                             --------->ZAT6 ---------ARR11(3)--------->YAB1 ------------>CBF     <-----------HVH21          <-----------GT1 -TOE1(2)        --------------->AGL15  ------>ZmHOX2a(1)                       <-----------GT1<-----   tagacctttatcttgaatactaataacagtatcggcccaatccttttctatgtttccttcagacccctcttgtaagtaagttttaactctctgttttttt  23383800                                    ----------->GT1                                    <---------ANAC46                                  <---------ANAC58                                  <---------ANAC58                                  <---------ANAC46                               <---------ANAC58                               <---------ANAC58                           <---------ANAC58                           --------->ALFIN1                           <---------ANAC58                          ------->MYC3                                         --------->TOE2(3)         <---------YAB1   <-------MYC3                                     ---------->DOF2     <---------ARR14(2)   ------->MYC2                                --------->AHL20(1)        -----     --------->ARR11(3)<---------AtLEC2                               <---------AHL20(2)        -----     <---------GLK1(2) <---------ANAC58                          --------->AHL20(2)           -------  --------->YAB1       <---------ANAC58                     --------->TOE2(3)  --------->TOE1(3)----- ------GT1  <---------YAB1<-------MYC2                  --------->YAB1--------->AHL20(2)    <--------   cttatcagattttgatgatcaatttgcatgtgtgcgtcgtgtatatatgaaattcgaatcaacatcaaaaaataaaataaagcttaatcgaattatacac  23383900                                                                  ------->GAMYB                                    --------->GLK1(2)      ------>MYB46(1)                           --------->ZAT18                 ------>MYB83                           <---------ZAT18                --------->WOX13(1)       <---------ANAC46  --------->ZAT18              <---------ALFIN1 ---->ANAC58          ---------->DOF2                 --------->ANAC58 ---->ANAC58      <-------TEIL     <---------GLK1(2)<---------ALFIN1             --------->AHL20(2) -->ANAC46   <---------AHL20(2)    <---------ARR11(3) --------->ANAC46         ----------->GT1 ---->ANAC46 --------->AHL20(2)    --------->ARR11(3) --------->ANAC58 <---------CCA1(2) ---GT1<---------ANAC55(2) <---------ZAT14<---------YAB1 --------->AtMYB61   ---------->DOF2   gactgtgttaagtatataaatacatagagcgcagaaagattcttatgacaaaacccacaccaatccaactcccatagctcaaagtaaatacaaaatccaa  23384000        --------->ZAT2                                                <------NtERF2        <---------ZAT2                                             ------>NtERF2        --------->At4g35610   --------->ANAC46                    <---------PCF5        <---------At4g35610   --------->ANAC58                    <---------ZAT18                 ---       ------->TEIL           --------->ANAC58                  <---------At4g35610               ---    --------->ANAC58--------->AHL20(1)     ---------->DOF2    <-----------RAV1(2)               -----    <---------ANAC55(2)      <---------LBD16                 <-------TEIL                     -------    --------->ANAC58--------->ARR11(3) --------->DAG2       --------->GLK1(2)                 -------    --------->ANAC46<---------ARR11(3)---------->DOF2       --------->CCA1(2)               <--------   agaatcacgcagctctcaagaatatatcagacacggagcaaaaaggaaagagagggagagagattcaggggcctcgaggtttgaagaaacagaggcaccc  23384100                                                                  --------->AtMYB61                                                                  <---------ALFIN1                              <----------DOF2                  --------->DEAR3(1)  ------>NtERF2                             <---------DAG2                    --------->AtMYB61  --------->ANAC58                          --------->DEAR3(1)                   <---------ALFIN1   --------->ANAC58                          <---------ALFIN1                    --------->MYB46(3) --------->SPL7                  --------->YAB1                            --------->REM1(1)  <---------SPL7 -------->HVH21  <---------ATHB12     <---------ANAC46  <---------At4g35610    ----------->HVH21 ------>LBD16--------->At4g35610  <---------ANAC46      --------->ZAT2         --------->LBD16      - ------>RAV1(2)  <---------YAB1   <---------ANAC58      --------->At4g35610   <---------HSFB2a(2)  <- -->ANAC58   <---------At4g35610  <---------ANAC58  --------->ANAC58         <---------LBD16 <------- -->ANAC58--------->LBD16 --------->AtMYB61         --------->ANAC46    <---------ALFIN1     <------- -ALFIN1<---------LBD16  --------->MYB46(3)         --------->ANAC58  ------>ZmHOX2a(1)      --------   ctgaaactggtccggagctatcattccaccacctttgcttgtgtctatggcttcaagcagcttcaccacctcctccatctccggacgcctgtctggattc  23384200  Previous    Next  AGI:  At3g63250.1    Description:  ATHMT-2/HMT-2/HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2); homocysteine S-methyltransferase. Identical to Homocysteine S-methyltransferase 2 (HMT-2) [Arabidopsis Thaliana] (GB:Q9M1W4;GB:Q9SDL6); similar to HMT3 (Homocysteine S-methyltransferase 3), homocysteine S-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G22740.1); similar to selenocysteine methyltransferase [Brassica oleracea var. italica] (GB:AAX20123.1); contains InterPro domain Homocysteine S-methyltransferase; (InterPro:IPR003726) Range:  from: 23381283    to: 23383657    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g63260.1    Description:  ATMRK1 (Arabidopsis thaliana MLK/Raf-related protein kinase 1); kinase/ protein serine/threonine/tyrosine kinase. similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G22750.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06454.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains Inte Range:  from: 23383856    to: 23385982    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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