Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    -                                                                                                    <                                                                                                    <                    ------>MYB46(1)                                                                 -                    --------->GLK1(2)         <---------HSFB2a(1)                                   <                    ------>MYB83   <---------------AGL15                                            -                   --------->WOX13(1)         --------->HSFB2a(1)                                 ---        <-----------ARR10       <-----------GT1<---------ARR14(2)                                 <--        <---------ARR11(3)    --------->HSFB2a(1)                                        <---------ICU4        --------->ARR11(3)    <---------HSFB2a(1)                        --------->TOE2(3)  ---------    <---------At4g35610       --------->HSFC1(2)   --------->LBD16       --------->TOE1(3) <---------YAB1    --------->At4g35610 <---------LBD16 ---------->DOF2            --------->At4g35610   --------->YAB1 -------->YAB1 <-----------GT1<---------HSFC1(2) <---------LBD16   <---------At4g35610  <---------ATHB12   aatagtagcagaccttatcaccaatctgtggaattttccaaacaaagaacatccggattagagacattcagcaaaccctaaaactcccaaatcatgagtg  23355300                                                               --------->At4g35610                                                              --------->MYB52(1)                                                            --------->DEAR3(1)                                                           <------NtERF2                                                          ------>NtERF2                                                         <---------ALFIN1                                                         --------->DEAR3(1)                                                        <---------ABI4(2)                                                        <------NtERF2                                                        --------->ATERF1(1)                                                       <---------DEAR3(2)                                                       ------>NtERF2                                                       <-----------HVH21                                        --------->LBD16<---------ATERF1(1)                                      <---------LBD16 <---------ATERF1(2)                                      <------NtERF2   --------->DEAR3(1)                                     --------->MYB52(1)--------->LBD16                                     ------>NtERF2    <---------DEAR3(1)                                    <---------ALFIN1  --------->RAP2.3(3)   ------>MYB83                    <---------ABI4(2)  --------->RAP2.6(2)   ------>MYB46(1)                 --------->ATERF1(1)--------->ATERF1(2) -------->HSFC1(2)                --------->TCP16(2) --------->RAP2.3(1) -------->At4g35610              --------->PCF2      --------->ATERF1(1) ---------At4g35610              <---------TCP16(1)  <------NtERF2                         --------->ANAC58 ---------HSFC1(2)               <---------PCF5     <---------ATERF1(1)                    <---------ANAC55(2) -------->HSFB2a(1)             <-----------TCP11(1)------>NtERF2                    --------->MYB46(3) ---------HSFB2a(1)            ------->GAMYB        <---------RRTF1(1)<---------ANAC58     --------->ANAC55(2) ---------->RAV1(2)         --------->MYB52(1)      <---------RAP2.3(1)        <---------ANAC46 ------>ARR14(2)        ----------->HVH21          --------->ANAC46   <---------ANAC58     --------->ANAC55(1) -------ARR14(2)   --------->ZAT18<---------ATERF1(1)<---------LBD16 <---------HSFC1(2)    --------->ANAC46 >ATHB12           <---------ZAT18------>NtERF2<---------WOX13(1)    --------->HSFC1(2)    --------->ANAC58   gaacctgcctcttctgtagagagcgcttgacaacggggccaccggagagattgacgccggcaccgagcggaagcttgtctgtcttgaacgaacacgcaat  23355400                                             <---------ARR11(1)               --------->GLK1(1)             <-----------ARR10               <---------GLK1(1)             ------->TEIL              <---------ARR11(3)          --------->ANAC58              --------->ARR11(3)          --------->ANAC46           --------->MYB46(3)    --------->REM1(2)              ------>ZmHOX2a(1)               ----------->RAV1(1)    <---------ZAT14               --------->TOE1(3)             --------->ANAC58   --------->ALFIN1               --------->TOE2(3)             --------->ANAC46 <---------ANAC58              --------->KAN4(2)        ----------->GT1  --------->ATHB12 <---------ANAC58           <---------GLK1(2)--------->GLK1(2)  --------->ANAC58 <---------ANAC46    --------->DEAR3(1)   --------->ANAC58    ---------->DOF2                      <-   taagcgtgtagagggagatatcgccgaagagattatcctcaaacacgaatctatccaagggtattaaagcaacaacgatttggagccaaatggattatag  23355500                                                                                      <---------At4g35610                                                                                      --------->At4g35610                                                                                      <---------ZAT2                                                                                      <---------ZAT14                                                                                    <---------PCF2                                                                               <---------ANAC58                                                                               <---------ANAC58                                                                               --------->O2                                                                               <---------O2                                                                               ======================                                                                               <---------bZIP60(2)                                                                               <---------TGA1a                                                                               <---------ANAC46                        --------->TOE2(2)                                     <------NtERF2                        <---------LBD16            --------->MYB111(1)       <-----------HVH21                        --------->TOE1(2)          <---------MYB46(3)       ----------->HVH21                       ----------->RAV1(2) <---------ANAC58                 --------->ALFIN1     <---------ZAT14   <---------ZAT2      <---------ANAC46            --------->MYB52(1)     --------->ZAT14   --------->ZAT2      <---------ANAC58           --------->ARR14(2)          --- -----ZmHOX2a(1)      ------->TEIL   <------ZmHOX2a(1)                <---------ARR14(2)  --------->ALFIN1   aggacagtgaagaaacaaaattcgaacctgggagagagaggagaggcttggagtagttggctctgaatcgaagaaccggtgtcgtgggagcagtggaaga  23355600                <---------At4g35610                          <---------MYB46(3)        <------NtERF2                                        --------->MYB52(2)       ------>NtERF2                                         <---------DEAR3(2)       <---------RAP2.6(3)                                   <------MYB46(1)      --------->RAP2.3(3)                                    --------->MYB55(2)      --------->RAP2.6(2)                                    <------MYB83      --------->RAP2.3(2)                                   <---------TOE2(2)      --------->DEAR3(1)                                    <---------TOE1(2)      --------->ANAC46                                     <---------MYB52(1)     --------->ERF1                                       <-------GAMYB     --------->RAP2.3(1)        <---------O2             <---------ANAC58     --------->ATERF1(1)        ----------->GT1          <---------ANAC58    <---------ATERF1(1)       <---------ZAT14         <----------DOF2    --------->At4g35610       --------->ZAT14      <---------ARR11(3)  --------->ANAC46 ========bZIP_DOF     --------->LBD16              --------->ARR11(3) <---------------------WRI1 ---- ------->DOF2   --------->At4g35610            ---------->DOF2  <-------TEIL    ---------->DOF2  <---   gaaagaagccgccatggcagtagccgtagaagtgaagtgactagactagaaaagacctttcgttggttcgtctacgaaaattgaaagggagggagacgaa  23355700                                                                                         <----------DOF2                                                                                       <---------PCF2                                                                                      ----------->TCP11(1)                                                                                    --------->ALFIN1             <---------HSFB2a(2)                                 <-----------HVH21<-----------RAV1(1)             --------->HSFB2a(2)                   <---------MYB52(2)        <----------DOF2        -            <---------LBD16                       --------->At4g35610     <---------ARR11(3)        <   <---------MYB59           <---------ANAC58     <---------At4g35610     --------->ARR11(3)       -- ----->At4g35610             <---------ANAC58   *TSS    --------->YAB1 --------->CCA1(2)------------- ------At4g35610         ---------->DOF2  <---------AtLEC2 --------->YAB1<---------CCA1(2)         --   gcagaccgaattgttcgggataagaaggaaagcttgctctgtttggatggacagctaactataatcccttcagatatatcttttctgtgggccttaatgg  23355800                                                                                          <---------YAB1                                                                                   <-------TEIL -------->At5g28300                                                                --------->SPL7 ---------RAP2.6(3)                                                              <---------SPL7 --------->GT1        <---------AtLEC2                                          <---------HSFB2a(1) ---->AGL1          <-----------GT1<------------CBF                            <---------------AtSPL3 ------->RAP2.6(2)  <---------AHL20(2)                ----------->RAV1(1)      <---------------AtSPL8   gccgtaatatcccatttgctatttacatggtagcccatattgaaatgggtttgagccaacaaaatttgtattgggtcgaagaaggtacggtgatcaatgg  23355900                  ----------->GT1                                                <-----------HVH21                 --------->DAG2    --------->AHL20(2)                     --------->At5g28300                ---------->DOF2 ----------->GT1                          ----------->GT1         --------->HSFB2a(2)   ----------->GT1<---------AHL20(1)     ---------->DOF2              ---         <---------HSFB2a(2)---------->DOF2  --------->YAB1        <---------ATHB12 ---------->DOF2 -   tctgatttgtaccagaagaaaagtaaaactaaaaggtttaaattctaacatatttatgtcatggtccaaatcaaagggtaaattgtcaaagggtattcaa  23356000                                                                                 ------->PIF5                                                                                --------->ANAC46                                                                         <---------DEAR3(2)                                                                     <---------DEAR3(1)                                                                 <-------TEIL   --------->ANAC58        <---------AHL20(2)                                      <---------ARR14(2)       --------->AHL20(2)                                       --------->ARR14(2)   --------->AHL20(1)                                          <---------MYB52(1)<-------PIF5<-------   <---------AHL20(1)            <---------ICU4               <---------DEAR3(2)--------->ANAC58<---- <---------AHL20(1)           --------->YAB1                <---------LBD16     --------->bZIP60(2) --------->AHL20(1)      --------->YAB1         --------->AHL20(2) ----------------------->TaNAC69(2) ------>AHL20(2)    <-------TEIL<---------YAB1  <---------AHL20(2)--------->MYB52(2)       --------->YAB1 -------->AHL20(2)  --------->ZAT18  --------->YAB1    <----------DOF2 <------NtERF2 ------>ZmHOX2a(1)   aaatatatattaaatgaaatggtgcattgatatcatcattcataaactatttatatacttttgccggttcgtcgtcgattccacgtccttcatttatgat  23356100                                                                                                    -                                                                                                    -                                                                                                <----                                                                                             <-------                                                                                            ---------                                                                                            <--------                                                                                         <------NtERF2                                                                                         --------->ATERF1(1)                                                                                        --------->At4g35610                   <---------ZAT6                                                     --------->ATERF1(1)            ---------->DOF2                 --------->CCA1(2)                         <---------PCF2-           <---------AHL20(2)          ---------->DOF2                             <---------ANAC58--      --------->ARR11(3)         <---------AHL20(2)                                <---------LBD16<--      <---------ARR11(3)        --------->AHL20(2)                                 <---------ANAC58--   <------ZmHOX2a(1)  <---------AHL20(2)   --------->ARR11(3)                     <---------LBD16<--- --YAB1--------->CCA1(2)    <---------YAB1 <---------ARR11(3)               <---------YAB1--------->DEAR3(1) -----WOX13(1)     ----------->GT1  --------->AHL20(2)               ----------->RAV1(1)<---------At4g35610   ggataggagatatataaagaagagttaattagcattaaataaaaagatactagtagattagtaagaagaggcaacaatgtgattagcgggagccgagccg  23356200  Previous    Next  AGI:  At3g63190.1    Description:  RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR). Identical to Ribosome recycling factor, chloroplast precursor (RRF) [Arabidopsis Thaliana] (GB:Q9M1X0;GB:Q93V42); similar to ribosome recycling factor family protein / ribosome releasing factor family protein [Arabidopsis thaliana] (TAIR:AT3G01800.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96574.1); contains InterPro domain Ribosome recycling factor; (InterPro:IPR002661); contains InterPro domain Ribosome recycling factor, bacterial-like; (InterPro:IPR015998) Range:  from: 23353557    to: 23355748    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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