Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <---------LBD16                                               ------>ZmHOX2a(2)                                              <---------GLK1(1)                                              ===========================HOX2a_HOX2a                                              <------ZmHOX2a(2)                                             <---------AGP1                                             ------->TEIL    --------->HSFB2a(1)                                             <---------ARR11(3)                                             --------->ARR14(2)           <-----------HVH21                                             --------->ARR11(3)          --------->DEAR3(1)                                             <---------ARR14(2)      <---------ATHB12                                             <-----------ARR10       --------->MYB46(3)                                            <---------CCA1(2)<---------HSFB2a(1)                  ---       ---------->DOF2                    --------->ANAC46   --------->HSFC1(2)             <------NtERF2      --------->AHL20(2)                  --------->ANAC58   <---------HSFC1(2)           <---------ANAC58      <---------AHL20(2)                  --------->ANAC58 <---------ARR14(2)             <---------ANAC46   ------>MYB46(1)                       --------->LBD16   --------->ARR14(2)          --------->ANAC46   ------>MYB83                          <---------LBD16--------->HSFB2a(2)     --------->ZAT14   <-- <---------MYB59                    --------->At4g35610<---------LBD16<-----------GT1 <---------At5g28300 -----At4g35610               --------->TOE2(3)==========================HOX2a_HOX2a  <---------LBD16 ---->At4g35610       <---------TOE2(3) <---------ALFIN1<---------HSFB2a(2) <---------DEAR3(1)   ---- -----RAV1(2)   ---------->DOF2<----------DOF2--------->GLK1(1)   ------>ZmHOX2a(1)  --------->MYB52(1) --MYB52(1)   <---------At4g35610   <---------At4g35610<---------ANAC46<---------At5g28300<---------ANAC58 ---HVH21     --------->At4g35610---------->DOF2    <----------DOF2<---------ICU4   ----------->HVH21   gtaccaaattaaagtcagcaaagtgaggttttcctttaagctccacggatctcactttcgggaacctcctaatcaccgtcgctggactcacggcgtagca  23287000                                       <---------SPL7                                      --------->TOE2(1)                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            --------->DEAR3(1)  <---------ANAC58                         <---------ALFIN1--------->SPL7                         --------->DEAR3(1)     <---------ANAC58                      --------->At4g35610                         --------->AtMYB61      <---------ANAC46                      <---------ZAT2  --------->LBD16       --------->MYB46(3)     <-----------------------TaNAC69(2)     <---------At4g35610 <---------HSFB2a(2)------>ZmHOX2a(1) --------->TOE1(1)----------->RAV1(1)     ------>ZmHOX2a(1) --------->HSFB2a(2)=======================HOX2a_HOX2a--------->ANAC58        --------->TOE2(3) ------>ARR14(2)  ----------->RAV1(2)--------------->AtSPL3          --------->GLK1(1)--------->ZAT2 -------ARR14(2) ==========================HOX2a_HOX2a--------->ANAC46        --------->TOE1(3) ----->At4g35610 ------>ZmHOX2a(1)  ------>ZmHOX2a(2) --------->ANAC58    ------>ZmHOX2a(1)   gttcccgatgaagactttcctcctgcaccaccgctcgatctcgtaccatgacttgcacaccagagagactgagttcctatccttatccagctgaataaac  23287100                             <----------ID1                             --------->ANAC58                             --------->ANAC58                       <---------HSFB2a(2)                                          =================HOX2a_HOX2a                       --------->HSFC1(1)                                  ------>ZmHOX2a(2)                       --------->HSFB2a(2)                    <---------MYB52(2)    ------>ZmHOX2a(2)                ----------------->AGL1                   ------>NtERF2     ==========================HOX2a_HOX2a                <-----------------AGL1                 <---------ANAC58   <------ZmHOX2a(2)                <-----------------AGL3                 <---------RAP2.6(2)===========================HOX2a_HOX2a                ----------------->AGL2                 <---------ANAC46  <---------ARR14(2)                ----------------->AG                   <---------ANAC58  --------->ARR14(2)     ------->MYC2      <---------HSFC1(1)             --------->RAP2.6(3)<---------ARR14(3)     <-------MYC2     <---------LBD16              <----------DOF2       --------->ARR14(3)     <-------MYC3<---------------AGL15            <---------AtLEC2       --------->ARR11(3)     ------->MYC3--------------->AGL15        --------->At4g35610        <---------ARR11(3)   <------ZmHOX2a(1)   gagaacacatgctctagtacctcttctggaaacgacaaggctattcgcttctgcattgcggccaaataacctcgagatctcgatgatcgaaccagaggaa  23287200                                                                       --------->DOF5.7(2)                                                                    <------NtERF2                                                                    ----------------->AGL3                                                                   ------>NtERF2                                                                  --------->ANAC58                                                                  --------->RAP2.3(2)                                                                  --------->ANAC58                                                                 --------->ATERF1(1)                                                                 --------->RAP2.3(1)                                                                <---------ATERF1(1)                                                            ------>ZmHOX2a(2)                                                           --------->CCA1(2)                                                           <------ZmHOX2a(2)                                                          <---------AGP1                                      --------->AHL20(2)  <---------ARR14(2)       --------->GLK1(2)                                      <---------AHL20(2)  --------->ARR14(2)    --------->ARR11(3)                                    <---------AHL20(2)    --------->ARR11(3)    <---------ARR11(3)                                    --------->AHL20(2)    <---------ARR11(3)------->GAMYB                                --------->AHL20(2)        --------->AGP1 --------->MYB52(1)          <---------SPL7      ----------->GT1           ----------->ARR10<---------DOF5.7(2) --------   gaagttggacagcgttcgaagaagagttgaacaagtatatatatataactcccaaggttagatctgaggcgccattaacggagataatctagtttcaaag  23287300                                                                                                  ---                                                                 <---------ARR14(2)      ----------->GT1  <---------At4g35610                                            --------->ARR14(2)   --------->WRKY18(1)  --------->At4g35610                                           <------ZmHOX2a(1) <------ZmHOX2a(1) --------->GLK1(2)                                *TSS      ---------->DOF2 <------ZmHOX2a(1)     --- -->DOF2  ---------->DOF2                    --------->ALFIN1 XXXXXXXXXXXXXXXXXXXX>MIR854A-E    -----   gagaagctgaaacaaagatgaagaagatagatagagagagagagagagtgggaagagaagagaaaaggatagggggaaggagaaggaggtcaagttaaaa  23287400                                                                                           ------->MYC2                                                                                           -------->ABF1                                                                                           <-------MYC3                                                                                           ------->MYC3                                                                                           <-------MYC2                                                                                           <-------MYC4                                                                                           ------->MYC4                                                                                          <---------TGA1a             ----------->GT1                                                              <--------ABF1             <------MYB83                                                                 <---------ANAC55(2)             <---------ANAC46                                                             --------->ANAC55(2)            <------MYB46(1)                                                               --------->TGA1a          <--------P                                                                      <---------O2        --------->ATHB12                                                             --------->bZIP60(1)        <---------MYB46(3)                                                           <---------bZIP60(1)       <---------YAB1                                                              <---------ICU4     --------->YAB1                                                                --------->YAB1    --------->MYB46(3)                  <---------ARR14(2)                        --------->ICU4    <---------ATHB12                   --------->GLK1(1)                          <---------YAB1   ------>MYB46(1)              --------->WRKY18(1)                         --------->GLK1(2)   -------->P<------MYB46(1)   <-----------HVH21                           <---------GLK1(2)   ------>MYB83            ------->GAMYB--------->ARR14(2)   <---------MYB46(3)<---------YAB1  <----- ------>ANAC58           <---------At5g28300         ===============================================bZIP_DOF ------>ANAC58    ---------->DOF2    --------->YAB1  <----------DOF2 <---------WOX13(1)   --------->O2 ----->DOF2 <------MYB83--------->MYB52(1)          <---------DAG2<---------YAB1<---------At4g35610   aagccaaccatggttgggttaaaagttaaccgtggtcaaacatatccatgtgagccttttcggtgattgtgattgtcgattctgatgatgacacgtgtct  23287500                                                                                --------->MYB52(1)                                                                          --------->LBD16                                                                          --------->At4g35610                                                                         --------->DEAR3(1)                                                                         --------->RAP2.6(2)                    --------->SPL7                                      --------->ATERF1(1)                  <---------SPL7                                        --------->RAP2.3(1)                  <---------RAP2.6(3)                                  --------->At4g35610                  <-----------HVH21                                    --------->ZAT2                 --------->DEAR3(1)                                    <---------ATERF1(1)               --------->ZAT2                                          <---------At4g35610               ------>MYB83                               --------->ZAT14----------->RAV1(1)               ------>MYB46(1)                            <---------ZAT14--------->RAP2.3(2)        -               --------->At4g35610                        --------->REM1(2)<------NtERF2    ---------              --------->ANAC46              <---------ARR11(3)         <---------ZAT2      <---------ARR11(3)             --------->MYB46(3)             --------->ARR11(3)        <---------ATERF1(1)  --------->ARR11(3) ----ANAC46--------->MYB52(1)  ---------->DOF2          <---------ZAT14<------NtERF2     ----------->ARR10   tataagcttcaaataccagccgtccgattgaatgaaagcgggagattatcttatcgactgtgcagagaagggcagccgcagaaaacgggacgagatattg  23287600                                                                --------->ALFIN1                                                              --------->ALFIN1                                                            <---------ANAC46           <---------At4g35610                              <---------ANAC58                       --           <------NtERF2                                    <---------ANAC58                       --          <---------DEAR3(2)                           <--------ATHB1                              --         <---------DEAR3(1)                            --------->YAB1                              <-        --------->ATERF1(1)                            --------->ATHB12                            --       <---------ATERF1(1)                        ==================================HOX2a_HOX2a  ----      --------->ALFIN1                            <------ZmHOX2a(2)     --------->ALFIN1        -----     --------->ATERF1(1)             <---------ANAC58 <---------ATHB12  <---------REM1(1)      ------     <---------AtMYB61<---------ANAC46           <---------ARR11(3)   <---------ANAC46         ------   --------->ALFIN1  <------NtERF2   <---------ANAC58 <---------YAB1 <---------AtMYB61        <------  --------->ALFIN1 <---------RAP2.6(2)           --------->ARR11(3)  --------->DAG2          <------- -------->ALFIN1  <---------LBD16---------->DOF2--------->GLK1(1)  <--------P<------ZmHOX2a(1)<------ >CCA1(2)<---------RAP2.6(2) --------->YAB1   <------ZmHOX2a(1) <---------AtMYB61       --------->GLK1(2)   gagagggggggtcggcttatcgcggcttctatcaaaatagcgcgagaaggagatcaatgatagggtgtggtaaggtgtaggagaagagggaatctaatga  23287700                                            --------->PCF2        --------->ANAC46                    ------>NtERF2        --------->ANAC58                 --------->LBD16                                     --------       ------->TEIL                     <---------LBD16                                      -------- ------->ANAC58                         <---------ANAC58                                    --------- ------->ANAC58                 --------->LBD16                                          --------->MYB52(1) ------->ANAC46                 --------->At5g28300                                     ----------->TGA1 --------ANAC55(2)             ----------->GT1                                          ----------->HVH21 ------->ANAC55(2)            <---------LBD16     ----------->RAV1(1)                  ------>ZmHOX2a(2) ----->CCA1(2)            <---------ATERF1(1)  --------->AtMYB61                      <---------At4g35610 ---->ARR11(1)            --------->ANAC58  <---------PCF5                            --------->At4g35610 -->HAHB4       <---------GLK1(1)       <---------ANAC58  ----------->GT1            --------->ARR11(3) --->YAB1       --------->CCA1(2)       <---------ANAC46 ----------->GT1             <---------ARR11(3) ---ATHB12     <---------ARR14(2)      <---------LBD16 <---------GLK1(2)         <---------ICU4 --TOE2(3)     --------->ARR14(2)<---------MYB52(1)  ------->GAMYB               --------->YAB1 ---YAB1--------->ANAC58  --------->ANAC58  <---------TCP16(1)   --------->AHL20(2)<---------ATHB12   tacgcgatgcacggctggatatgaggggaagccccgtaaattgcggggaccacaacagaatgttaaaaaaaatactagactactaatgatctgacggtaa  23287800                                                       <---------ATHB12                                       <---------TGA2(1)--------->YAB1                          -----                                       --------->TGA2(1)<---------ICU4                          <----                                       <---------bZIP60(1)                                     <-----                                  <---------ICU4     --------->WOX13(1)                      ------>ZmHOX2a(1)      --------->AHL20(2)         <---------YAB1  --------->ORA47(1)             --------->GLK1(2) <--      --------->YAB1           --------->YAB1   ------->GAMYB            <---------At4g35610 -------- ->At5g28300            <---------ZAT6 --------->bZIP60(1)               --------->At4g35610 <------- ->DOF5.7(2)        <---------YAB1--------->YAB1--------->DEAR3(1)      --------->GLK1(2)   <-------- -->GT1   ---------->DOF2 <---------MYB52(1)   --------->MYB46(3) <---------ANAC46        ------>ZmHOX2a(1)   caaaacaataaaaaaagaagctattactgttatttatgatgacatcacaaccgtccaatcatgttttgatgtggaatctgagcatctatctcctcctatt  23287900  Previous    Next  AGI:  At3g62980.1    Description:  TIR1 (TRANSPORT INHIBITOR RESPONSE 1); ubiquitin-protein ligase. Identical to Protein TRANSPORT INHIBITOR RESPONSE 1 (TIR1) [Arabidopsis Thaliana] (GB:Q570C0;GB:O24660); similar to GRH1 (GRR1-LIKE PROTEIN 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G03190.1); similar to AFB3 (AUXIN SIGNALING F-BOX 3), auxin binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G12820.1); similar to AFB2 (AUXIN SIGNALING F-BOX 2), auxin binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G26810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22414.1); similar to transport inhibitor response 1 [Gossyp Range:  from: 23284091    to: 23287350    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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