Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->TOE2(3)        --------->HSFB2a(1)        <---------HSFB2a(1)       <---------TOE2(3)       --------->DAG2       <---------TOE1(3)       --------->MYB59  <---------TOE2(3) -->ZmHOX2a(1)------>ZmHOX2a(1) -----------AGL15 ---------->AGL15 ----------->AG ------------AG                   <---------ARR11(3)                                             <--- ----------->AGL1          ------->GAMYB                                <<<<<<<<<<<<<<<<<LFY     ---- ----------->AGL2         --------->MYB46(3)                            ----------->RAV1(1)      ---- ------------AGL1        <---------At4g35610                     --------->AHL20(2)             -----   taatgaggtaaggttcctaaatgtttcaacagacaaaatcatcgaacaattctgaaacttttgaaaaaaaaatccaacattgggagaactagaatcactt  23271200                                               --------->O2                                               =======================================bZIP_DOF                                               --------->ANAC46                                               --------->ANAC58                                               =======================================bZIP_DOF                                               --------->bZIP60(2)                                               --------->TGA1a                                               <---------O2                                               <---------TGA1a                                               --------->ANAC58                                           <------NtERF2                                           --------->ATERF1(1)                                           ------>NtERF2                                          ------>NtERF2                                 --------->DAG2                                          <---------ATERF1(1)                          ---------->DOF2                                          --------->RAP2.6(2)                  <---------HSFC1(1)                                         <---------RAP2.6(2)                   --------->HSFB2a(2)                                        --------->RAP2.6(3)                    --------->HSFC1(1)                                        --------->ATERF1(1)                    <---------HSFB2a(2)                                      --------->DAG2                       ==========================    --------->AtLEC2                 ====================bZIP_DOF          <----------DOF2        --- ------At5g28300                     ---------->DOF2                  --------->At5g28300         --- ----->RAP2.6(3)         ------>ZmHOX2a(1)<---------RAP2.3(1)        ----------->GT1--------->ANAC58 ----->SPL7             --------->TOE1(2)<---------DEAR3(1)         <---------DEAR3(1) ============== ---->MYB52(1)   <------NtERF2    <---------HSFB2a(2)           <-----------RAV1(2) --------->ANAC58   acggccatacaaacgagtcgtcgagtcctgcgagaccgagaaggcggccacgagactagacaaactccagacggtgactttctcgaacgtaaagtgaatg  23271300           <---------REM1(1)        --------->ICU4 <---------bZIP60(2) <---------ANAC58                                                                                   - <---------O2                                                                                       < <---------ANAC46             <---------MYB52(1)                                                   <- <---------TGA1a            <---------MYB46(3)                                                     -- <---------ANAC58  --------->HSFC1(2)                                                             <-- ==========bZIP_DOF--------->HSFB2a(1)                                                            <-- -------->HVH21    <---------HSFB2a(1)   <-----------HVH21                                     ------ -------->TGA1<---------TOE2(3)          <-----------TGA1                                    -------- ==========bZIP_DOF<---------HSFC1(2)  ---------->ID1  --------->ATHB12          --------->ALFIN1 <--   gtgacgagtgaagatgaaggaaggctcgagccgttggactcgtcgtcatcgagctattcattgtctagactctagagagagaggtggaagaagacgagtg  23271400          --------------->AGL15          =================================================================================MADS_MADS          <---------------AGL15         <---------ANAC58         <-----------------AGL2         <-----------------AGL1     <-------GAMYB                                                              <---------HSFB2a(2)     <---------At4g35610                   --------->ALFIN1                   --------->AHL20(2)     ==============================================MYC_MYB                    --------->YAB1    --------->MYB52(2)                   <---------ANAC58                    <---------ATHB12  *TSS   <---------ANAC46                <---------ANAC58                    <---------ATHB51 --------->LBD16                         <---------ANAC46                 <---------------AGL15 -------->ATERF1(1)                      <---------ANAC55(2)             ----------------->AGL2 ------NtERF2                            <---------ANAC55(1)             ----------------->AGL3 --------LBD16                           --------->ANAC55(2)             ------------>CBF ---->NtERF2                             =====================bZIP_DOF --------->ANAC46 -------ANAC58    <------ZmHOX2a(1)      --------->TGA1a               --------->ANAC58             < -------ANAC58  --------->ANAC58         <---------O2                  --------->ANAC58            <- --->ALFIN1     <---------TOE2(3)        --------->O2    <------ZmHOX2a(1)--------------->AGL15    -- ->ALFIN1<---------ANAC58      <---------At4g35610 <----------DOF2--------->ARR14(2)              <-- -------ANAC46  --------->ANAC58         <---------TGA1a<----------ID1------>ZmHOX2a(1)     <--------   gcgcgggagttgctggataaggaagcctagtttagatgatgagacgtgtttggctattaggacaaaactatcctcgccaattatagaagaaaccctttta  23271500         <---------MYB52(1)                                       --------->ZAT6 ------------CBF                      <---------REM1(2)<---------At4g35610 --------AHL20(2)                   --------->ARR14(2) ----------->RAV1(2)                      ----- ------->ATHB12                    <-------GAMYB     --------->REM1(1)                  <---------ARR11(3) -------AHL20(2)                   <-----------HVH21 <---------ALFIN1                   <---------AHL20(1) --DOF2 <----------DOF2  <-----------GT1 --------->ANAC46       <-----------GT1    ------------>CBF   tttattgggcctttagcccatactaatttacattctcggttacacggtgtaacttacacctgctagtaactctatgggcctatggcccaatatatgtgaa  23271600                                                                                     <------NtERF2                                                                                   --------->DEAR3(1)                                                                                   ----------->HVH21                                                                                   <---------DEAR3(1)                                                                                  --------->ATERF1(1)                                                                                 <---------ATERF1(1)                                                         <---------SPL7          --------->LBD16                                           <---------ATHB12                      ------>NtERF2                                        <---------AHL20(2)        <---------ARR11(3)------>NtERF2                                        --------->AHL20(2)  --------->ANAC58    <---------DEAR3(1)              --------->HSFB2a(2)    --------->YAB1    --------------->AtSPL8  <---------LBD16       <---------GLK1(2)             *TSS--------->WOX13(1) --------->ANAC58  ======================= ------>GT1   <---------HSFB2a(2)   <---------AHL20(2)<---------LBD16         ------>ZmHOX2a(1)  <---   gtcaaaactgattcgtcgcgaagttgagtttttgttaaataataaatcaattgaatcgcggtactcaatttcttctcttcctccggcgacgatgtcgatt  23271700                                    <---------TOE1(3)                                    <---------TOE2(3)                <-----------GT1 ------>ZmHOX2a(2)              <---------DAG2   <------ZmHOX2a(2)           <---------ARR11(3) --------->ARR14(2)     ------>ZmHOX2a(2)        --------->ARR11(3)   --------->ARR14(2)         <---------ARR14(2)   <---------ARR14(2)      --------->LBD16  ====================================HOX2a_HOX2a  =====================================HOX2a_HOX2a  <------ZmHOX2a(1)       <---------LBD16                              <---------At5g28300 ===========HOX2a_HOX2a  <---------LBD16   >>>>>>>>>>>>>>>>>LFY       <-----------GT1            ---- --------GT1  <----------DOF2 <---------ARR11(3)              --------->ATHB12  <---------YAB1 <-----   tacaggatcgctagagctttacccttctccgggatcttaaggtttctccattgttttcttctcttcattgtattactgcgttactattgaagaattgact  23271800                                                  <---------ANAC58                                                 --------->ATHB12                                           <-------GAMYB                                          <---------MYB46(3)                                          ----------->GT1                                          <------MYB46(1)                                          <------MYB83                                     --------->MYB59                                     <---------TOE2(3)                 ----------->HVH21                                <----------DOF2  <---------ICU4       --------->SPL7           <-----  ---------->DOF2            <---------ARR11(3) <---------YAB1      --------->LBD16            ------ ------->GT1            <---------ATHB12<--------P<---------ANAC58<---------LBD16          ---------- ----WOX13(1)    <---------CCA1(2)   <---------TOE1(3)          <-----------GT1           --------->AHL20(2)   gataaaaagaattcaatttgtatccaatctagagctttttaggttggttaatgcttgcatcgtatttctccgtatgacaagagattacacaataaaagat  23271900                                                                  <---------At4g35610                                                            ---------->DOF2                                                     <---------At4g35610       <---------ANAC58         <---------TOE1(3)    <------NtERF2--------->At4g35610             ---       <---------ANAC58         <---------TOE1(2)    --------->ZAT2                         -------->P ----ARR11(3)                   <---------TOE2(3)    <---------ZAT2                     <---------HSFB2a(2) --->ARR11(3)     <---------TOE2(3)                  --------->At4g35610       <---------YAB1-------- >DOF2 <---------ANAC46    --------->GLK1(2)     --------->ANAC46--------->GLK1(2)      --------->HSFB2a(2)   ttgttttttgtgtgtgtgtttatgttgaaattctaaggtttcattttgtacaggcagcttgagaaagaagctgaaactgtgatcaatgttctgcaacctg  23272000                                              --------->ANAC58                                              --------->ANAC58                                          <---------HSFB2a(2)                                        <-------TEIL--------->ANAC58                                       --------->GLK1(2)                                       --------->CCA1(2)                                       --------->ARR14(1)                                      <---------GLK1(2)                      <---------MYB46(3)                                      --------->ARR11(1)              <---------MYB46(3)                       --------->ARR11(3) --------->HSFB2a(2)   <---------HSFB2a(2)        --------->GLK1(2)                       <---------ARR11(3)<---------LBD16        --------->HSFB2a(2)     <---------ARR11(3)                --------->ZAT18       <---------ARR14(2)        --------->HSFC1(1)    ----------->ARR10 <----------DOF2<---------ZAT18       --------->ARR14(2)        <---------HSFC1(1) <---------ANAC46 ---->TEIL--------->YAB1     --------->At4g35610    --------->ANAC58<---------At4g35610 --------->ARR11(3) --->RAV1(2) ---------->DOF2 <---------At4g35610  ---------->DOF2  <---------AGP1 <------NtERF2    --   gacctttgggaatcatagagcacaagttctcggctcaagagattcgggaagcaaaagctacagtttctagagctgttgatagttggcgaagacattctga  23272100  Previous    Next  AGI:  At3g62910.1    Description:  APG3 (ALBINO AND PALE GREEN); translation release factor. similar to peptide chain release factor, putative [Arabidopsis thaliana] (TAIR:AT2G47020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22401.1); contains InterPro domain PCRF (InterPro:IPR005139); contains InterPro domain Class I peptide chain release factor; (InterPro:IPR000352); contains InterPro domain Peptide chain release factor 1; (InterPro:IPR004373) Range:  from: 23268529    to: 23271402    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g62920.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN74119.1) Range:  from: 23271637    to: 23272268    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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