Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      ---------->DOF2                             --------->ANAC58                                                <-------                             --------->ANAC46                                                <-------                           =================RAV                                   --------->GLK1(1) ------->YAB1              <-----------RAV1(2)                                   <---------ARR14(2) -----TEIL                <------ZmHOX2a(2)  --------->ANAC46                    <---------ARR11(3) -->AtSPL8              <------ZmHOX2a(1)--------->GLK1(2)                       --------->ARR14(2) ---AtSPL3     --------->AHL20(2) --------->MYB46(3)   --------->DAG2            --------->ARR11(3) -->AtSPL3  <---------ANAC55(2) ----------->RAV1(1)   ---------->DOF2    <---------------AtSPL3 ---AtSPL8--------->AHL20(2) --------->ANAC58--------->LBD16             <---------------AtSPL8   ttcatcaacaaattacataaaatgaaggatcaggcaacaaaagattccaggcactaaaaagctagagacatagacatggtacagatatcgaatttagggt  23247400                                                              <------MYB83                                                              <------MYB46(1)                                                            <---------MYB52(1)                                                          <---------ANAC58                        --------->GLK1(1)                <---------TOE2(3)                    --------->HSFB2a(2)               <---------ANAC58         <---------ANAC58                        <---------ZAT6  <---------ARR14(2)          --------         <---------ANAC58            ---------->DOF2  <---------ANAC58                      <--------       <---------YAB1   <---------GLK1(1)        ----------->GT1 --------->ARR14(2)        ---------- --TOE1(3)          <---------HSFB2a(2)   <---------ANAC46<---------ANAC58  <---------MYB52(1) --TOE2(3)    <---------WOX13(1)<-----------------------TaNAC69(2)   ------>ZmHOX2a(1)   <<<<<<<<<<GATA-1   tctatgtttatgcttgatagatcgagaaatcagtaacgagaaagacggggagagttacttacgttggtatcctcttccattggtttactgaaatcgagaa  23247500                             >>>>>>>>>TBF1                          >>>>>>>>>TBF1                    --------->HSFB2a(2)                    <---------HSFC1(1)                   ------>ZmHOX2a(2)                  <------ZmHOX2a(2)                  --------->CCA1(2)                 --------->ARR14(3)                 --------->ARR11(3)                 <---------ARR14(3)                 <---------ARR11(3)                 --------->AGP1          <---------ICU4                 <---------AGP1   ----------->GT1   --------->DAG2<---------ARR14(2)----------->GT1  ---------->DOF2--------->ARR14(2)--------->YAB1                              <-----------GT1 --->GT1       ----------->ARR10  <---------YAB1                      <<<<<<<ZML2 -HSFB2a(2)<---------HSFB2a(2)  --------->YAB1                    --------->TOE1(2) ->GT1<---------ZAT6<---------HSFB2a(2) --------->ICU4       <xxxxxxxxxxxxxxxxsmallRNA(i)      ------   aaaaaaaagtgttagagaagatctagaagaagaagaatgataaaaattagaagacgaagatgagaaaacctagaactagaattacctcatgttcacttga  23247600                           <---------ZAT2                           --------->ZAT2                                         --------->ANAC58                           <---------At4g35610                           <---------YAB1                           --------->At4g35610                       --------->ARR11(3)             <                      --------->ALFIN1                               <---------ARR11(3) <------ZmHOX2a(2)                 --------->MYB52(1)                                  <---------GLK1(2) <---------ARR14(2)             <---------------------WRI1<------ZmHOX2a(1)            <---------RVE1(1)  --------->ARR14(2) ---->DOF2 <---------DEAR3(1)   ---------->DOF2   ------->TEIL --------->YAB1     --------->ANAC58  <   agctcgatgaaattcggcgaaacggtggaagctgaaaaggaggaaaacgatgaatttagaaactatcaagagattttcatagaaacgcagatcgaagaaa  23247700                                                           --------->ANAC58                                                --------->GLK1(1)                                                <------ZmHOX2a(2)                                                <---------GLK1(1)             <---------ZAT18                                               <---------ARR11(3)     --------->ATHB12                                               --------->ARR11(3)     --------->YAB1                                               <---------AGP1        --------->ICU4     --------->GLK1(1)                 --------->ANAC58          ---------->DOF2 --------->ANAC46   --------->ZAT14      <-----------GT1         <----------DOF2 --------->RVE1(1) >>>>>>>>>TBF1 --------->ZAT18 ---------TOE2(3)--------->ANAC58<---------ANAC58          --------->ANAC58<---------ANAC46*TSS<----- ---------TOE1(3)--------->ANAC46<---------ANAC58------>ZmHOX2a(2) --------->YAB1   <---------HSFB2a(2)   ttagggttttacctgctatacgctaaatcccgctttcgttttccaaaaagatctctctcacacgaagaagaatgatgaggtgtactcgagaaatcaagtg  23247800                                                <------------CBF                        <---------TOE1(2)                                               -------->ATHB1                           <---------TOE2(2)                         --------->At4g35610   <---------ICU4                       ------>ZmHOX2a(1)                <----------DOF2                -------->HAHB4                   --------->ARR14(2)               <-------GAMYB                   --------->ATHB12                 --------->ARR11(3)              <---------MYB46(3)               <---------AHL20(2)               <---------ARR14(2)             <---------ANAC46                  --------->ATHB51                 <---------ARR11(3)             <---------DEAR3(1)               --------->ICU4 --------->ARR11(3)--------->RVE1(1)             <---------ANAC58                 <---------ATHB12              <---------AHL20(2)             <---------RAP2.6(2)              <---------YAB1 <---------ARR11(3)--------->CCA1(1)             <---------ANAC58       ------>NtERF2      <----------DOF2     --------->AHL20(2) ----ZAT6 --------->ALFIN1    <------------CBF<---------ATHB51    ---------->DOF2  --------->TOE2(3)   taaacaaactcagtggcggtttaagagggctgaattgaggcctatctaattattgggccttaagatactaaagcccattaaatatcctcatatgtttttt  23247900                                                                                       <-----------GT1                                                                                   --------->GLK1(2)                                         --------->ICU4                           --------->ARR11(3)                                         <---------YAB1                           <---------ARR11(3)                        <---------AHL20(1)                                        <---------GLK1(2)                        --------->AHL20(1)      --------->YAB1                   <---------RVE1(1)               --------->ATHB12     ----------->GT1                         --------->ZAT14             <---------MYB59      --------->ZAT14                           <---------ZAT14   --------->AHL20(2)   --------->AHL20(2)     <---------YAB1           <------ZmHOX2a(1) <----------DOF2   <---------AHL20(2)   <---------AHL20(2) <---------AHL20(2)           <---------------AtSPL8   gtttataaattaaggcctaattggaataaatttcagtttagttattattttcatagcccattcaaatattcacaggagtacagagattttgacttttcaa  23248000                                     <---------ANAC58              <---------MYB46(3)                                     <---------ANAC58          --------->ATHB12                                     <---------ANAC46         <---------YAB1                                  --------->ARR14(2)   --------->At4g35610                                  <---------ARR14(2)   <---------ZAT2           ---------->DOF2              <---------AtLEC2    <---------GLK1(2)    <---------At4g35610 <---------MYB46(3)       <         <----------DOF2        ----------->ARR10    <---------WRKY12     <--------P              <--        <---------DAG2 <---------AHL20(2)            <---------WRKY38(1) <---------ANAC58         <--     <-----------GT1  --------->YAB1<-------TEIL   <-----------HVH21     <---------ANAC58      <-----   aatggtttcaccttttacatgaaataaaaatgctcagattcgtggtttagcctggtcagctcttctcattggatgggttgttcaaagtacaaggtccctt  23248100                                                                                           --------->ANAC55(2)                                                                         <---------At4g35610                                                             --------->ANAC46              <---------ANAC55(2)                                                             ----------->HVH21             --------->ANAC46                                                            --------->LBD16                --------->ANAC58 ---------MYB52(1)                                <-----------GT1        --------->At4g35610  ------- -------ANAC58                           <---------AHL20(2)--------->HSFB2a(2)             --------->ANAC55(1) -------ANAC58                          --------->AHL20(2) <---------HSFB2a(2)             --------->ANAC58 -----DOF2                    ----------->GT1  ----------->GT1<------ZmHOX2a(1) --------->ATHB12    -   tcgttacatttcttaagtagggtttgagcaatttgtaacttataaaatgaagtaacaacttccaggacaggtttgagctcaacgattagtaagacgtaac  23248200                                                           --------->ARR14(3)                                                           --------->ARR14(2)                       --------->SPL7                      <---------ARR14(3)          >>>>>>>>>>WRKY43      <----------DOF2            --------->ARR11(3)                    ----          >>>>>>>>>>WRKY26     <---------ANAC58    <----------DOF2                              <----          >>>>>>>>>>WRKY38     <---------ANAC58  <----------DOF2 <---------HSFB2a(2)          -------       <---------At4g35610<---------MYB52(1)<---------MYB52(1)   --------->HSFB2a(2)       --------->ANAC55(2)   <---------YAB1     <---------MYB52(1) <---------TOE1(2) <---------ARR11(3)        --------->CCA1(2) -->MYB52(1)         <---------SPL7  ------>ZmHOX2a(1)     <---------ARR14(2)       <---------ARR11(3) -------->ICU4       <-----------HVH21   <---------TOE2(2) --------->GLK1(2)        --------->ARR11(3)   tgattatgaagatgaccaaaacccgtccggtatgctttcctcatacgtttgctctttcgaaaatcttctagtacttgggtctacaagatatatatgtaac  23248300  Previous    Next  AGI:  At3g62840.1    Description:  similar to small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative [Arabidopsis thaliana] (TAIR:AT2G47640.1); similar to small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative [Arabidopsis thaliana] (TAIR:AT2G47640.4); similar to unknown [Picea sitchensis] (GB:ABK21523.1); similar to Os05g0314100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055168.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); co Range:  from: 23246465    to: 23247791    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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