Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->AHL20(1)                  <---------AHL20(2)             <---------AHL20(1)                 --------->ARR11(3)             --------->ARR11(3)                 <---------AHL20(1)           <---------AHL20(1)                   --------->AHL20(1)           --------->ARR11(3)           <--------HAHB4           <---------ARR11(3)           --------->ATHB12          --------->YAB1                <---------ICU4 --------->ANAC46                      <---------YAB1                                              <- ----->YAB1--------->AHL20(1)          --------->ICU4                     <---------ZAT6      ------- -------->AGL15                      --------->YAB1           <----------DOF2            <----------ID1 ---------AGL15           ----------->GT1       <---------ARR11(3)        --------->ALFIN1------>NtERF2   tataagaaacaaaaatattttggtttaatggttatttgataatcatttgatatatttgatagggctttgctagggagtgtgagcgagtattgcgccaaac  23148000              <-------GAMYB          ------>ZmHOX2a(1)        <---------ANAC46        <---------ANAC58        <---------ANAC58      --------->ZAT18   <---------TGA1a                      <---------YAB1   --------->O2                        --------->ARR11(3)   <---------O2                        <---------ARR11(3)   --------->ANAC55(2)          --------->At4g35610              <---------ANAC46   <---------ANAC55(2)     --------->ANAC58              <---------WOX13(1)       --------->ARR11(3)   ===================MYC_MYB  --------->ANAC58        --------->ATHB12       ---------->DOF2 ----------HVH21           --------->ANAC58           <---------YAB1<---------ARR14(2)       -------- -->MYB52(1) <---------MYB46(3)--------->ANAC58<---------At4g35610  --------->ARR14(2)  <---------REM1(1)   gagtcaagtgtcctgtggttatcgtcaagaagcaagctcaagataattaagctcatatgattgcattgtgtatatgtttcgaaagaactggtgtaacact  23148100                                  ----------->GT1              <---------ANAC58                               --------->MYB52(1)              <---------ANAC58                            <---------ANAC55(2)        <---------RVE1(1)                            -                            --------->ANAC55(2)        <---------CCA1(1)                      <------                           <-------TEIL               --------->ARR11(3)                --------->bZIP60(1)                      <---------AHL20(1)              <---------ARR11(3)                <---------bZIP60(1)                      --------->AHL20(1)              --------->ARR14(2)     --------->At4g35610  ---                      --------->AHL20(2)              <---------ARR14(2)     --------->ZAT2 ---------   --------->WOX13(1) <---------AHL20(2)          <---------At4g35610        <---------At4g35610 ---- ->ZAT6            --------->YAB1<------------MYB.PH3(1)       <---------ANAC46----------->HVH21-----   tgaatcaatcttcgtatgcgataataaaatacataacggtttaaacaaatttagcagatatttttgcttatataaaactagctgacaatgacatcaatca  23148200    --------->AHL20(2)    <---------AHL20(2)   --------->AHL20(2)   <---------AHL20(2) -------->WOX13(1)                                       --------->ANAC46 ---ATHB12                                               --------->ANAC58 <---------ANAC46 ------>MYB46(3)                                         --------->ANAC58<---------TOE2(3) >WOX13(1)                                        <---------TOE2(3)      <---------TOE1(3)    ------- ---->P     --------->ARR14(2)           <---------AHL20(2)            <-----------GT1       <------- ---->WOX13(1)                           --------->AHL20(2)           --------->AHL20(2)  -----------   accaattaaattcaaatctacattctctacatacaatgccaaattaaaaactaatgtaaacgcaaatttcaatttaacgtatagaagaatgtaatgaacc  23148300                                                                                           --------->ARR14(2)                                                                                           --------->ARR11(3)                                           <------------CBF                                <---------ARR11(3)                               <---------ANAC46        <----------DOF2       ---------->DOF2    <----                          <-----------RAV1(1)      <---------ZAT18  ---------->DOF2        <---------ARR14(2) >TEIL             ------------>CBF    --------->ANAC55(2)         <---------ATHB12 ---------->DOF2 ----GT1       <---------ARR14(2)      <---------ANAC55(2)     ------------>CBF    xxxxxxxxxxxxxxxxxx ---->AtSPL8   --------->ARR14(2)      --------->ANAC55(1)---------->DOF2  <------NtERF2  <---------CCA1(2)   atataccaagttttgaatatttgcaattttgttgtttgaacacttaattgttgttcgcttcaaagttcaataaaggcctcaaggcccaaagtatatctgt  23148400                                                      ----------->GT1                                                     <-------TEIL                                         --------->LBD16                                        <---------ANAC58     --------->ARR14(2)                                        --------->ANAC55(2)  --------->GLK1(2)                                        <---------ANAC58     <---------ARR14(3)                                        <---------ANAC55(1)  <---------ARR14(2)                                        <---------ANAC46     <---------ARR11(3)                                     <---------ARR14(2)      --------->ARR11(3)                                     --------->ARR14(2)      --------->ARR14(3)                                 <------NtERF2    --------->HSFC1(2)                             >>>>                    --------->ICU4  <---------MYB52(1)<---------ANAC46                        >>>>>>>           <---------REM1(2)   <---------DEAR3(1) --------->ZAT2                           >>>>>>>>>TBF1         <---------ETT(2)      --------->DEAR3(1) --------->HSFB2a(1)                   >>>>>>>>>TBF1  *TSS   --------->ETT(2)    <-----------HVH21    <---------HSFB2a(1)                  xxxxxxxxxxxxxx -----MYB52(1)    --------->YAB1------>NtERF2     <---------ZAT2                     >>>>>>>>>TBF1  > xxxxxxxxx>smallRNA(fl3)    --------->ANAC46      <---------HSFC1(2)                xxxxxxxxxxxxxxxxx   tactcatccagtcgacacagtcatacttaaacgtcgccgtttccgtgttcgaagcttcgtgaaaatcttcaatctcgcgagagagaagaagaagaagaag  23148500                                                                              --------->GLK1(2)                                                                             --------->ARR11(3)                                                                             <---------GLK1(2)                           <---------MYB46(3)                                --------->ARR14(2)                           <------MYB46(1)<---------HSFB2a(2)                <---------ARR14(2)   >>>>>>>>>TBF1           <------MYB83<---------ARR14(2)                   --------->HSFB2a(1) >>>>>TBF1                <---------AtMYB61                                 <---------HSFC1(2) >>TBF1           ------>ZmHOX2a(1)    --------->ARR14(2)                   --------->HSFC1(2) xxxxxxxxx>smallRNA(se3) <---------WOX13(1)       <---------LBD16           <---------HSFB2a(1) >>>>>>>>TBF1    <---------ANAC46     <---------GLK1(1)                    ----------->ARR10        - xxxxxx>smallRNA(se3)   <---------ARR14(2)--------->HSFB2a(2)    ---------->DOF2       --------->HSFB2a(2)   aagaagaagaagcgatgttcctggtggattggttctatggagttctggcaactctgggactatggcagaaagaagcgaagattctgtttctaggtctcga  23148600            <---------ALFIN1           --------->MYB46(3)     <------NtERF2    ------>NtERF2    --------->LBD16   <---------ATERF1(2)   --------->ATERF1(2)   --------->RAP2.6(2)                     --------->MYB52(2)   --------->DEAR3(1)                     <-------TEIL                                    <----------DOF2   --------->RAP2.3(3)            <------ZmHOX2a(1)                             --------->GLK1(2)  --------->RAP2.6(3)            <----------ID1                                 --------->ARR11(3)  <---------LBD16             ---------->DOF2                                  <---------GLK1(2) ------->GAMYB     <---------ANAC58 <---------TOE1(1)                       <---------HSFB2a(2) -------->ANAC46   <---------ANAC58 <---------TOE2(1) --------->ANAC46      --------->HSFB2a(2)  ----   caacgccggcaaaaccaccttgcttcacatgttaaaggacgaggttcgttttcttcgagccatatcagtaatcgctgtctagaatcttgtttcttttact  23148700                                                                                   <---------ETT(1)                                                                                   --------->ANAC46                                                                                   ----------->HVH21                                                                                 --------->At4g35610                                                                          <---------ALFIN1                                                                         <---------REM1(2)                                                                        ------>NtERF2                                                                        <---------RAP2.6(3)                                                                        <-----------HVH21                                                                        ----------->RAV1(1)                                                                       --------->At1g77200                                                                       --------->RAP2.3(3)                                                                       --------->DEAR3(1)                                                                       --------->RAP2.6(2)                                                                       ------->GAMYB                                                                       --------->ANAC46                                                                       ----------->HVH21                                                                       --------->DREB2C(2)                                                                       <---------ETT(1)                                                                      --------->DEAR3(2)                                                                     --------->At4g35610                                                                     <---------At4g35610                                                                   =================RAV                                                                   <-----------RAV1(2)                                                                   --------->MYB46(3)          ------           --------->YAB1             --------->ATHB12            --------->At4g35610          <----- ------>CDC5---------->DOF2   --------->YAB1                     <-----------HVH21 ------->GAMYB   tagcgcgaacgaatcaaagtcttaatcagcgataatcgtttgatttgggtttcagagactggtccagcatcagccgacacagcatccgacatcggaagag  23148800                                                                                           ------>ZmHOX2a(2)                                                                                         --------->ARR11(3)                                                                                         <---------ARR11(3)                                                    <---------ANAC58         --------->ANAC58                                                    <---------ANAC58         --------->ANAC58  <-----   --------->ARR14(2)                            <---------WOX13(1)  =============================HOX2a_HOX2a   <---------ARR14(2)                       <---------At4g35610<---------HSFB2a(2)<---------TOE2(3) --->ARR11(3)                          <------MYB46(1)         --------->HSFB2a(2)<---------TOE1(3) ----ARR11(3)        ---------->DOF2   <------MYB83 <---------ANAC46 <------ZmHOX2a(1) ----------->ARR10   cttagtatcggcaaaatcaagttcaaagccttcgatttgggaggtcatcagattgctcgtagagtctggaaggactattacgctaaggtttgatcttctt  23148900  Previous    Next  AGI:  At3g62550.1    Description:  universal stress protein (USP) family protein. similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40101.1); contains InterPro domain UspA; (InterPro:IPR006016); contains InterPro domain Universal stress protein (Usp) (InterPro:IPR006015); contains InterPro domain Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729) Range:  from: 23146960    to: 23148149    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g62560.1    Description:  GTP-binding protein, putative. similar to ASAR1 (Arabidopsis thaliana secretion-associated RAS super family 2), GTP binding [Arabidopsis thaliana] (TAIR:AT4G02080.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44889.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) Range:  from: 23148402    to: 23150021    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version