Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------->ANAC58                                                             --------->ANAC58    --------->ANAC55(2)                                  --------->ANAC46    <---------ANAC55(2)                        <-----------GT1          --------->WOX13(1) <------ZmHOX2a(2)                   <---------At4g35610 --------->ANAC58            <---------GLK1(2) ---------ARR11(3)                   --------->At4g35610 --------->ANAC58     <----------DOF2 -------->ARR11(3)  <-------TEIL     --------->ZAT2    --------->MYB52(1) <---------ATHB12   gagatcatgtgataaatctagtttcatttcatcaagaacagcttccatatttctatctaacgcaaacaattcatcaatcactttgcagactctctctact  23145900                            ------->GAMYB        <---------ICU4                            ----------->HVH21   <---------YAB1                           <---------MYB52(2)   --------->ICU4                          ----------->RAV1(2) <--------HAHB4                                ---------       --------------->AtSPL8        <---------GLK1(2)                                     --------->ZAT6   --------->LBD16        --------->At4g35610 <---------ICU4                              <---------TOE2(3)  <---------HSFB2a(2)     <---------At4g35610 --------->YAB1                         --------->ZAT6  --------->HSFB2a(2)    --------->MYB52(1)  <---------YAB1                       --------->WOX13(1) <---------LBD16      --------->ANAC46       --------->ICU4    <-------TEIL      <-------TEIL      --   tcttccggattagtacttgattcaacacaactgaccccagtttcttcatcattatcgcattcagattcaacttcttcatcacatccatcactaacattag  23146000                      --------->ANAC58                      --------->ANAC46                      --------->ANAC58                    <---------ALFIN1                 <------ZmHOX2a(1)              --------->YAB1               --------->TOE2(3)      --------->ANAC58                             <---------YAB1            <---------ARR14(2) --------->ANAC58--------->ZAT14                   --------->YAB1   --------->ZAT6   --------->REM1(1) --------->ANAC58<---------ANAC46           <------ZmHOX2a(1) -------->P --------->ARR14(2) --------->ANAC58<---------ZAT14                  --------->ICU4 >TOE2(3) XXXXXXXXXXXXXXXXXXXX>MIR162A/B  --------->At4g35610          ----------->HVH21 ------->MYB46(3)  --------->ZAT14   --------->WOX13(1) --------->ALFIN1       <---------TOE2(3)   aactaccactagagaaacctctacacccaagactcgcatcaagcagttgtacagaggagtgtggcaatggaatttgacggtaaggatgataagtagaaga  23146100                                                               <---------LBD16                                                              <---------ANAC58                                                              <---------ANAC55(2)                              <---------------AtSPL3          <---------ANAC58                              --------------->AtSPL3       --------->ARR14(2)                              --------------->AtSPL8   <------NtERF2                        --------->LBD16               --------->LBD16 --------->WRKY38(1)                   --------->ZAT14                    ------>NtERF2   ----------->HVH21                   <---------ABI4(2)                 --------->ANAC46 --------->WRKY12    --------->TOE2(2) <---------LBD16               --------->MYB46(3)--------->WRKY45    --------->TOE1(2)--------->MYB52(1)             <---------LBD16 <----------DOF2   --------->YAB1  --------->ZAT18      ------>ZmHOX2a(1)  <---------ARR14(2) ------->TEIL      <---------ZAT14--------->SPL7------>ZmHOX2a(1) <------NtERF2               <------NtERF2   atgaatcatacgagagaagagagcaccggaaaatcgtacttcctcttctcctctcccgccgattacgcggctttgactggaaatgaattcatcggcatcg  23146200                                                                                          --------->At4g35610                                                                                          <---------ZAT2                    <---------HSFB2a(1)                                              --------->AtLEC2                    <---------HSFC1(2)                                          --------->RAP2.6(2)                    --------->HSFC1(2)                                        <---------ZAT2                    --------->HSFB2a(1)                --------->HSFB2a(2)    <---------At4g35610   <                   <---------KAN4(2)                   <---------HSFB2a(2)    --------->ZAT2 --------                   --------->ARR14(2)                  ------>ZmHOX2a(1)      --------->At4g35610 <--                   --------->GLK1(2)        <---------At4g35610            <---------At4g35610   ----                 <------ZmHOX2a(1)      --------->ALFIN1                   --------->At4g35610  <----   aatgaagaagagcaaatgaggaatcttcttaatgaagtctgagtggagcttcttctcctagagagatagagccatggagcagcagccatggaagctcgac  23146300                                                                                                  <--                                                        --------->ANAC58                          ---                                                        --------->ANAC55(2)                       <--                                                        <---------ANAC55(2)                       <--                                                 <---------ARR11(3)                               <--                                            <------NtERF2                                         ---                                         <---------LBD16--------->ANAC55(1)                      <---                          --------->ANAC58<---------ANAC46                                       ----                          --------->ANAC58<---------DEAR3(1)                                   ------                   <------MYB46(1)     <---------RAP2.3(2) ------->TEIL                       <------     ------------>CBF   ---------->DOF2<---------RAP2.6(2) <---------ARR14(2)               --------- ---------MYB46(3) ----------->GT1 <----------DOF2      --------->ANAC46                  <---------WOX13(1) --->HVH21         <------MYB83 <---------ATHB12 --------->ARR11(3) <----------DOF2  <----------DOF2- ----NtERF2        <---------DEAR3(2)  --------->ANAC46 --------->ANAC58           --------->HSFC1(2) -->NtERF2        <---------DEAR3(1)  <---------At5g28300  --------->ARR14(2)      <---------HSFC1(2) -----DEAR3(1)    <---------DREB2C(2) <---------LBD16<---------REM1(2)     --------->ATHB12<---------ZAT6   ggcgattagcaatggcgaagtcggtgaaaagccactgatttacggcggagagctcttcacgtatttgggcctttgtttgattagaagctttgagtgataa  23146400     ---------->ID1    <-----------GT1                                ----------->RAV1(1) <---------ICU4                                  --------->ZAT18 ------ATHB1                                    --------->TCP16(2) ------>YAB1                                   <---------TCP16(1) -------ICU4                                   <---------PCF5 -------AHL20(1)                              <---------ANAC58 -------AHL20(2)                             <---------MYB46(3) ------>AHL20(2)                         --------->ATHB12 ------YAB1               ------>ZmHOX2a(2)<---------MYB52(1) ----->ICU4               =====================================HOX2a_HOX2a              <---------AHL20(2) --->YAB1               --------->ARR11(3)<------------CBF                             <---------YAB1 ---YAB1                <---------AGP1  <---------YAB1  <------ZmHOX2a(1)--------->ANAC58 >YAB1      ---------->DOF2  <-----------HVH21<---------ANAC58 ---------->DOF2---------->DOF2 -------->ICU4      <------------CBF  <-----------GT1<-----------RAV1(2) --------->ANAC58   <--------   taattttgacccattaaaggcccattgatctggtcacatataaccattgggtccaccaggagcattaaagctcaaacgcataaagaatttttatttttta  23146500                                                                             <---------YAB1<---------AHL20(2)                                                                           <---------AHL20(2)                                           <---------RVE1(1)               --------->AHL20(2)       <---------ARR14(2)                 <---------ARR11(3)              <---------AHL20(2)       --------->ARR14(2)             <---------ANAC58                    --------->AHL20(2)      <---------GLK1(1)               <---------ANAC46                    --------->AHL20(1)    <------MYB46(1)                   <---------ANAC58                    <---------AHL20(1)    <------MYB83     <---------CCA1(2)----------->GT1                ------------>CBF  <---------AHL20(2) -AHL20(2)       ------->TEIL <----------DOF2                      <---------PCF5     --------->AHL20(2)   gttggaaggtatctgtatgcatcttatcttcgttttagggtcgtgatattttctcaagtttttcttaggggaccaatttatttttagatttatttgattc  23146600                                                     <---------MYB59                                   <---------ANAC58 <---------ANAC55(2)       <---------ATHB12  <----                                   <---------ANAC55(1)                      --------->WOX13(1) ------                                   <---------ANAC55(2)                <------ZmHOX2a(2)       -------                           <----------DOF2        <-----------GT1    <---------ARR11(3)       <------                  <---------DOF5.7(2)      <---------TOE2(3)         --------->ARR11(3) --------->TOE2(3)            <---------MYB52(1)     --------->ANAC55(2) --------->MYB52(1) --------->WRKY18(1)<-------  <-----------GT1<---------ZAT18   <---------ANAC58 --------->ANAC55(2) --------->WOX13(1) --------->WOX13(1)   tatcttacatttctcttagttcacgttgtctttgtatacgtgtttatggatattacataactgaaaatcaagatcagtcaatcagtgtaacatcaatcat  23146700       <---------LBD16                            --------->GLK1(2) -----YAB1                              <------ZmHOX2a(1)      <-------TEIL                 --------- --->TOE2(3)    ------->TEIL           ----------->GT1--------->LBD16                      <---------YAB1 -->YAB1     ----------->GT1      --------->CCA1(2) ----------------->AGL3            <---------ARR11(3) ---ICU4<---------ANAC46        --------->CCA1(2)<---------GLK1(2)                    --------->ARR11(3) --ATHB12--------->LBD16  --------->MYB52(1)    --------->At4g35610              --------->TOE2(3)   caataaccctgcgggatgtatataaaactaagggatatatgaggaaaatcagattccagattaagttcataaatattgattcacctaaaatctataataa  23146800  Previous    Next  AGI:  At3g62540.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G62470.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G14820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43438.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78368.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23144316    to: 23146289    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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