Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                ------->MYC3                                                              ------->MYC2                                                              <-------MYC3                                                              -------->ABF1                                                              <-------MYC2                                                              <-------MYC4                                                             <---------TGA1a                                                             --------->ANAC55(2)                                                <---------At4g35610     <---------LBD16                                            ----------->HVH21--------->TGA1a                       <----------DOF2    <---------AtLEC2   --------->ANAC46                       ================================================bZIP_DOF                      <---------ANAC58    <---------ANAC58   --------->O2                      *TSS                <---------ANAC58   <---------O2                      <---------ANAC58    =================RAV------->MYC4--------->LBD16             <----------DOF2       ------>ZmHOX2a(1)      <---------REM1(2)   --------->ALFIN1 <-----           --------->At4g35610<---------ANAC58  ----------------------->TaNAC69(2)             ------           <---------At4g35610<---------ANAC58 <-----------RAV1(1)  --------->At4g35610       -------           --------->ZAT2--------->ATHB12 ----------->RAV1(2)<---------ANAC55(2)         --------->At4g35610 ---------ZAT6 ------------>CBF   --------->TOE2(3)<---------LBD16  <---------At4g35610<-----------RAV1(2)   tagagttactcacagctttcaatggcttcattgcttcctcatttgcctgatgctgcggtttacacgtgtctgatcacggggtttgggactcagaagaagc  23142700                                                      <---------------------WRI1                                  ---------->DOF2    ----------->GT1                               --------->ANAC58 --------->HSFB2a(2)                               --------->ANAC58 <---------HSFB2a(2)                            <-------TEIL --------->GLK1(1)  ----------->GT1                         --------->GLK1(1)     <---------LBD16                         <---------ANAC58 ----ZAT2                --------->At4g35610  ------>ZmHOX2a(1)       <---------At4g35610 --->ZAT2<---------------------WRI1 --------->DAG2 --------->SPL7     --------->At4g35610    -------- -->GLK1(2)     --------->At4g35610--------->DAG2--------->LBD16    --------->ZAT18    <---------ANAC58   tggttactgtttacgaactgctcaaggagatgcaagaaaagggacatcctccggatggcaaaacgtataatgcgctgatcaaactgatggcgaaccagaa  23142800                     ------>ZmHOX2a(2)                    <------ZmHOX2a(2)                   --------->ARR11(3)                   <---------ARR14(2)                   --------->ARR14(2)                   <---------ARR11(3)                --------->ANAC58              <------------CBF         --------->ANAC58             --------->LBD16         --------->ANAC46            <---------HSFB2a(2)                           --------->bZIP60(1)       <---------HSFB2a(1)           --------->HSFB2a(2)                      <---------ICU4       --------->HSFB2a(1)          ------>ZmHOX2a(2)                        --------->ICU4       <--      ---------->TaMYB80--------->REM1(1)------------>CBF                  --------->YAB1         <-- <---------LBD16--------->ANAC58  <---------ARR14(2)                      <---------YAB1          <-- --->GT1 --------->ANAC58         --------->ARR14(2)           --------->ANAC46    <---------bZIP60(1)   aatttcggaacatgccacaaggatctacaacaagctgatccagaacaatattgagccatcgatacacacattcaacatgataatgaagtcatacttcatg  23142900                                                                --------->MYB52(1)             --------->ALFIN1                     <---------AHL20(2)       <------MYB83 -------ANAC46                     --------->CCA1(2)<---------TOE2(3)      <------MYB46(1) -------ANAC58                    <---------ARR14(2)<---------YAB1      >>>>>>>>>SARD1 -------ANAC58       <---------ZAT14             --------->AHL20(2)     >>>>>>>>>CBP60g<---------YAB1   gcgagaaactatgagatggggagagcagtttgggacgatatgaacaattgaattaatattgaaaactaagagaaatttggttttgggttattacaaaaaa  23143000                                                                                               <-----                                                                                       <------ZmHOX2a(1)                                                                                   ---------->DOF2                   ---------->DOF2                                            --------->MYB52(2)                --------->ANAC58                                            <---------MYB52(1) <-----   <---------At5g28300                          ---------->DOF2         <---------ANAC58  <----------  --------->YAB1--------->ANAC58  <---------------AGL15                 <---------ANAC58  --------->ALFIN1   acaattacagtattagccaagaaaagagagagtttgctcttatagggtctaaaagaaggcccatttacaaatgggcttgttagtttaaaggactggtgct  23143100                                                           <---------CCA1(2)                                                          ------->TEIL                                                         <---------ALFIN1                 <------MYB83                           --------->LBD16                 ----------->GT1                        ------>NtERF2                 <------MYB46(1)                        <------NtERF2                --------->MYB111(2)                    --------->RAP2.3(3)                --------->MYB59                        --------->RAP2.3(2)                --------->MYB111(1)                    --------->RRTF1(2)                --------->MYB46(2)                     --------->RAP2.6(2)               <--------P                              --------->DEAR3(1)               <---------MYB55(1)                     --------->ATERF1(1)              *TSS          <---------------AtSPL8    --------->RAP2.3(1)              <-------GAMYB <---------------AtSPL3    --------->DEAR4(2)      <<<<<<<<<WRKY18    --------->YAB1               --------->ORA47(2)      <---------WRKY12   -------->HAHB4               <------NtERF2     ------------>CBF   <---------YAB1               <---------RRTF1(1)    --------->TOE2(3) --------->YAB1                 ------>NtERF2    <-----------HVH21<---------YAB1---------->DOF2   <---------RAP2.3(1)          <-----------HVH21 ----ANAC58  --------->MYB55(2)  --------->ANAC58   <---------RAP2.3(2)           --------->LBD16 ----ANAC58  <---------MYB46(3)  --------->ANAC58   --------->ANAC46      <----------DOF2 -RAV1(1)   <---------TOE2(3)   <-------TEIL   --------->ARR14(2)        --------->TOE2(3)   tctcttcgtcaatggaggttggtataataataggtacgaaagaaaaccctatttgcgccgcatctctctcgtcttcctttactccgtcaaaaccatgttt  23143200                      --------->TOE2(3)             <---------ZAT2             --------->ZAT2             --------->At4g35610             <---------At4g35610            <---------ARR14(2)            --------->ARR14(2)          --------->LBD16         <---------HSFB2a(2)         --------->HSFB2a(2)         <---------ANAC46                           --------->LBD16        <---------LBD16                            --------->DEAR3(1)      <---------ARR14(2)                           <---------ALFIN1                          <-------      --------->ARR14(2)                    <----------DOF2                         ------>ZmHOX2a(1)     --------->At4g35610                   --------->TOE2(3)                 ==============HOX2a_HOX2a     <---------At4g35610            <---------ANAC46------>NtERF2            <------ZmHOX2a(2)   ctaagtcagttccggagctgtaaacctttgctcgagtctcgtctacctttgctccgcctctctctctctaaatgtctcgatcagtccttcaaaaccacgg  23143300                                                         ----------------------->TaNAC69(2)                                                        <------MYB46(1)                                                        <------MYB83                     <------ZmHOX2a(2)                 --------->ALFIN1                     ====================================HOX2a_HOX2a                    <---------ARR11(3)                 <---------AtMYB61       --------->ARR14(2)                            <------ZmHOX2a(1)                    <---------ATHB12       <---------ARR14(2)         ---------->DOF2 <------ZmHOX2a(1)         <---------HSFB2a(2)    <---------ANAC46--------->ARR11(3)         --------->YAB1               --------->HSFB2a(2)   <-----------------------TaNAC69(2)         <---------ATHB12          <<<<<<<<<MYB98<------NtERF2 --LBD16   ----------->GT1---------->DOF2   --------->WOX13(1)  <----------DOF2   --------->ALFIN1   ctagtagcgaatacggtagtaagatcaacaaagtcacaaagcatgtcaatgaggaggatggtgcaactttctatgttactcgaaggggggcaatcgatag  23143400                                                                                <---------ANAC58                                                                                <---------ANAC58                ---------->DOF2                                                 <---------ANAC55(1)              --------->YAB1      --------->At4g35610              <---------MYB59       --------->At4g35610        <---------At4g35610              <------------MYB.PH3(2)       <---------ZAT2  --------->ARR14(2)                          <---------MYB111(1)       --------->ZAT2 <---------GLK1(1)                            <---------MYB52(2)       <---------At4g35610  ---------->DOF2                        <---------MYB46(2)          <-----     ------->PIF5     --------->GLK1(1)                       ----------->GT1   <---------ANAC46<----     <-------PIF5     <---------CCA1(2)                      <---------TOE2(3)<---------AHL20(2)-----    ----------->RAV1(2)<---------ARR14(2)   --------->At4g35610    <<<<<<<<<<AtMYB44           ------   ttctgcccctgctgaatcaaaagcatatccaaaagcagctaatatcagttcaatccatagtatgaggtaactaactcaaattacttgtagataacttact  23143500                --------->ATHB12                  <------ZmHOX2a(1)            --------->ATHB12                 <---------HSFB2a(2)        ----------->GT1              --------->GLK1(2) ------------AGL2                   <---------GLK1(2)                                            <--- -----------AGL15                   <---------GLK1(1)                                       <-------- ---------->AGL15   <---------AHL20(2)       --------->HSFB2a(2)     --------->ZAT14<----------DOF2 ----------->AGL3   --------->AHL20(2)      <---------LBD16<------ZmHOX2a(1)        <---------DAG2  -   aatttttgaaaggtttattgattaaaatcaactatagggaatctcttctggaggaaacagaggaagactactacagacgcttggcactttttgccctgag  23143600  Previous    Next  AGI:  At3g62528.1    Description:  unknown protein Range:  from: 23142458    to: 23142631    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g62529.1    Description:  pseudogene of pentatricopeptide (PPR) repeat-containing protein Range:  from: 23142622    to: 23142951    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g62530.1    Description:  PBS lyase HEAT-like repeat-containing protein. similar to PBS lyase HEAT-like repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G58180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70690.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain PBS lyase HEAT-like repeat (InterPro:IPR004155); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) Range:  from: 23143114    to: 23144274    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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