Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <---------AHL20(2)                                                                                    <---------AHL20(2)                                        <---------RVE1(1)               --------->AHL20(2)                                       <---------ARR11(3)               <---------AHL20(2)                                   <---------ANAC58                    <---------AHL20(1)                                   <---------ANAC46                    --------->AHL20(1) -AGL15                            <---------ANAC58                    --------->AHL20(2) >AGL15           <---------CCA1(2)----------->GT1                     <---------AHL20(2)        ---- --AGL3       ------->TEIL <----------DOF2                      <---------PCF5     --------->AHL20(2)   ggaagttatctgtatgcatcttatcttcgttttagggtcgtgatattttctcaagttttttttaggggaccaatttattttcagatttatttgattctat  23119700                                <---------ANAC58                                <---------ANAC55(1)                                <---------ANAC58                        <----------DOF2                      <---------YAB1                     <---------ARR11(3)                   <---------MYB52(1)                   --------->DOF5.7(2)                 --------->ANAC58                                                                <---                 --------->ANAC58                 <---------MYB59                            <-------                 --------->ANAC46                <---------ANAC55(2)                        ---------                 --------->ANAC55(2)             --------->ANAC55(2)                      <---------ATHB12                <---------TOE1(3)              <-----------GT1                          --------->WOX13(1)               <---------DOF5.7(2)      <---------TOE2(3)                            --------->TOE2(3)         <---------MYB52(1)     --------->ANAC55(2)                        <---------ATHB12--------->YAB1 ----->YAB1   <---------ZAT18   <---------ANAC55(2) --------->MYB52(1)   --------->WOX13(1)<---------ICU4   catacatttctcttagttcacgttatctttgtatacgtgtttatggatattacataactgaaaatcaagatgagtcaatcagtgtaacatcaatcatcaa  23119800                                                                                                   --                                                                                                   xx                                                                                                 <---                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                               xxxxxx                                                                                           <xxxxxxxxx                                                                                         ------>ZmHOX2a(1)                                                                                     --------->ANAC46                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx      --------->LBD16                                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------LBD16                                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ---------->CDC5      --------->MYB52(1)                        --------->MYB52(1)<-----------GT1 xx ------ATHB12          ---------->DOF2                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --YAB1      ------->TEIL                               ------->TEILxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) >TOE2(3) ----------->GT1      <---------MYB46(3)    <---------ATHB12        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   taactctgcgggatgtatataaaactaaagggattgttgattctgtaatcaaacaatgaatttgtactaagggatttagacaaattcactcctctctcag  23119900                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              <---------ANAC46                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                  ---------                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  <--------                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        <---------TOE2(3)            xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                     ---------->DOF2        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                      xxxxxxxxxxxxxxxxxx        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxx      --------->YAB1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <------MYB83------->TEIL   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(i)          <------MYB46(1) ------->MYB52(1)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    <---------TOE2(3)<----- xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ---------->DOF2                        --------->MYB59------>ZmHOX2a(2) ------MYB52(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -----ZAT2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <--- -----At4g35610    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ---->At4g35610   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       --------->ATHB51<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) ---->ZAT2---------->DOF2     <---------ANAC58            <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------ANAC46     <---------AGP1 xxxxxxxxxxxxxxsmallRNA(se3)  <---------ANAC58  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------ARR11(3) >smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------YAB1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) >smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->ARR11(3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ctaacaaataatcaaaggggaagaacagagttgcttgaatagaaagctagggtttgctctataattgtagtctcttgtattaggttaaagatggatctct  23120000                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <---------WRKY18(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <-----------GT1   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) >GLK1(1)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------YAB1 -GLK1(1)              ------------>CBF                         <---------ARR11(3) xxxxx>smallRNA(le3)  <<<<<<<<<<<<<<<<<LFY       --------->YAB1 --------->ARR11(3) xxxx>smallRNA(si3) <---------AHL20(2)          <---------YAB1 --------->YAB1<---------ARR11(3)     < ----LBD16<---------ALFIN1     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------TOE1(2)         ------ ------LBD16      <-----------TBP   --------->HSFB2a(1)    <---------YAB1   *TSS           --------->ZAT6   ggggagtttgaccctcccctatttatacaatgggtcgaacataccaaaatatgataaacttctaattatcttaggtctaaatctccatttctaacactca  23120100                                        --------->SPL7                                             --                   <---------O2        <------NtERF2                                              <--                   <---------ANAC46    ------>NtERF2                                              ---             <---------ANAC46         <---------SPL7                                             <---           --------->MYB52(1)        <---------ANAC58                                            ----          ----------->TGA1           <---------ANAC46                                           <----      --------->ANAC58       --------->YAB1                                 <---------YAB1      <----      --------->ANAC58       <---------ICU4        ------>NtERF2          <---------ICU4        <----   --------->ARR14(2)       --------->ICU4      XXXXXXXXXXXXXXXXXXXX>MIR859 --------->ICU4     <-----   <---------ARR14(2)--------->ALFIN1<---------ANAC58--------->TOE1(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---------TOE2(3)  <---------TGA1a<-----------RAV1(1)--------->TOE2(3) ----------->GT1        ------>NtERF2 --->YAB1 ----------->HVH21 <---------ATHB12--------->ZAT2       ---------->DOF2           --------->ZAT2   tgaaggaaacgcatgacggagacggggggaatcattctggcggacgagctctctgccttaaaatcaaaaaagatggtcattactggccaactatgctggc  23120200                                                                                            <xxxxxxxx                                                                                           --------->RAP2.3(1)                                                                                           --------->ATERF1(1)                                                                                          ------>NtERF2                                                                                          <---------ATERF1(1)                                                                                          <---------RAP2.3(1)                                                                                       <---------ATERF1(1)                                                                                      <---------O2                                                                                      --------->O2                                                                                      <---------TGA1a                                                                                      --------->ANAC58                                                                                      --------->TGA1a                                                                                      --------->ANAC46                                                                                      --------->ANAC58                                                                                      <---------DEAR3(1)                                                                                   ----------->HVH21                                                                      --------->ARR11(3) <---------DEAR3(1)                                                                      <---------ARR11(3) --------->DEAR3(1)                                                                      <---------ARR14(2)--------->ATERF1(1)       <--------------OsCBT                                           --------->ARR14(2)--------->RAP2.3(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         --------->LBD16 --------->WRKY18(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <---------HSFC1(2)       <-----------HVH21  <---------------------WRI1                             --------->HSFC1(2)      <------MYB83  ------ ------->SPL7                                            --------->HSFB2a(1)   --------->SPL7<------- ----NtERF2                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <----- --->NtERF2       --------->ZAT14                        <---------KAN4(1)    <---------MYB52(1) ------SPL7       <---------ZAT14          --------->DEAR3(1)     --------->LBD16<------MYB46(1) ----->ZAT18    --------->At5g28300       --------->ANAC46     ------>ZmHOX2a(1)--------->MYB59<----- -----ANAC58  <---------DEAR3(1)          --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<------ -----ANAC58 <---------LBD16              --------->ANAC58--------->KAN4(2)  <---------SPL7<------NtERF2 -----ANAC46--------->ANAC46    <-----------HVH21        --------->KAN4(1)  <---------ANAC58--------- -NtERF2   <---------REM1(2)   --------->bZIP60(2)       <---------HSFB2a(1)<---------ANAC58<--------   ggactgcgaagcctacgcggtgaagtgcgaaccatgtcagagacacggcccgatgaagaacgttcctcccgagatactgcgttcggtcacggcgccgtat  23120300                                                        --------->ARR11(3)                                                        <---------ARR11(3)                                                 ============================HOX2a_HOX2a                                                 ------>ZmHOX2a(2)                                                =============================HOX2a_HOX2a                                               <---------ARR14(2)                                               --------->ARR14(2)                                            --------->HSFB2a(2)   --------->TOE1(2)                        <---------HSFB2a(2) <---------ATHB12           ============================HOX2a_HOX2a xxxxxxxxxxxxxxxsmallRNA(se3)  --------->AtMYB61<------ZmHOX2a(2) --->ARR14(2)               <------ZmHOX2a(1)--------->LBD16            >>>>>>>>>MYB2 --SPL7                     ===========================HOX2a_HOX2a      >>>>>>>>>MYB1 ----ARR11(1)             <---------TOE1(2)<---------LBD16   <---------YAB1 ----ARR14(2)             --------->SPL7 ==============HOX2a_HOX2a     --------->MYB52(1) ---CCA1(2)             --------->TOE1(2)===============HOX2a_HOX2a   ------>ZmHOX2a(1)      <------- >DEAR3(1)          --------->GLK1(1)    ------>ZmHOX2a(1)  <---------TOE2(3)           ------>MYB83 -ANAC46            <---------GLK1(1) ------>NtERF2 ---------->DOF2  <---------MYB59    ------>MYB46(1)   ccattcatgcgatgggccatggatatcgtaggaccaatgcctccttccggatccaaaagatttatgttagtcctaactgattacttcaccaaatgggtcg  23120400                                                                                             <-------     <-------TEIL                                                                         --------->SPL7   ------->PIF5                --------->SPL7                                            <------NtERF2   <-------PIF5               <------NtERF2                                              ------>NtERF2   ------->MYC2               ------>NtERF2                                             <---------SPL7   <-------MYC2             <---------ANAC58                                            --------->ZAT18   <-------PIF4             <---------ANAC58                                           <---------ANAC58   <-------MYC3             <---------ANAC46                       <---------YAB1      <---------ANAC46   ------->PIF4          <-----------RAV1(1)--------->TOE2(3)    <---------ICU4        <---------ANAC58   ------->MYC3      --------->ICU4       ------>NtERF2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <-------MYC4      <---------YAB1    XXXXXXXXXXXXXXXXXXXX>MIR859 --------->ICU4     <------NtERF2 <-------TEIL      <---------ICU4  --------->ZAT2       ---------->DOF2              ------>NtERF2 ----HVH21    ---------->DOF2<---------SPL7 --------->TOE1(3) ----------->GT1     --------->ZAT2  <--   aggcacatgcataccacaaagtcattactggcggacgagctctctgccttaaaatcaaaaaagatggtcattactggccaactatgctggcggactgcga  23120500                                                                                      <---------ARR11(1)                                                                                      <---------ARR14(2)                                                                                   <---------ANAC46                                                                                  --------->RAP2.3(1)                                                                                  <------NtERF2                                                                                  --------->ATERF1(1)                                                                                 <---------RAP2.3(1)                                                             <---------ARR11(3)  <---------ATERF1(1)                                                             --------->ARR14(2)  ------>NtERF2                                                             --------->ARR11(3) --------->DEAR3(1)                                                             <---------ARR14(2) <---------DEAR3(1)                                                          --------->LBD16      --------->ATERF1(1)                                                         --------->LBD16       --------->RAP2.3(1)                                                --------->HSFB2a(1)           <---------ATERF1(1)       ------>NtERF2                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ARR14(2)       <------NtERF2                            --------->KAN4(1)            --------->ANAC46      --------->LBD16                           <---------KAN4(1)           <---------LBD16      xxxxxxxxxxxxxxxx>smallRNA(s)              <---------HSFB2a(1)       <------ZmHOX2a(2)     <---------DEAR3(1)           --------->DEAR3(1)  ===========================HOX2a_HOX2a  -------    <---------LBD16              --------->ANAC46     ------>ZmHOX2a(1)  <-----------HVH21  <--------   --------->ANAC46              --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------CCA1(2)  <---------REM1(2)              --------->ANAC58--------->KAN4(2)    --------->SPL7<---------SPL7 --------------WRI1    <-----------HVH21        <---------HSFC1(2) <---------ANAC58--------->DEAR3(1) ------------OsCBT    --------->bZIP60(2)       --------->HSFC1(2) <---------ANAC58<xxxxxxxxxxxxxxxxx   agcctacgcggcgaagtgcgaaccatgtcagagacacggcccgatgaagaacgttcctcccgagatactgcgttcgatcacggcgccgtatccattcatg  23120600  Previous    Next  AGI:  At3g62475.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 2.3e-55 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family) Range:  from: 23120076    to: 23121656    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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