Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------ATERF1(1)            --------->ANAC58                    --------->ATHB12                       --------->ANAC58                  <-----------HVH21                      <-----------GT1                <---------TOE1(2)                   <---------ANAC58     --------->ANAC46--------------------->WRI1     <---------ANAC58         <---------At4g35610 ---------DOF2 <---------AtLEC2              ---------->DOF2                 --------->At4g35610    -   gctttctccacaatttcgcatgtcattggtcgtctccatgactcttgcaaagtagcttatcacgctctctccattcttcatctccagtgtttcgaaagtc  23115200                                                                                                  ---                                                                                            <--------                                                     --------->TOE2(3)                      <--------                                                     --------->TOE1(3)                      <--------                         --------->ZAT14          <-----------GT1                     <----------DOF2       --------->At4g35610              --------->TOE2(3)         --------->ANAC46<---------CCA1(2) ------>ZmHOX2a(1)       <---------ZAT14<---------ANAC58  <---------WOX13(1)     <---------RAP2.6(3) -------->TOE2(3) <---------ZAT18       <---------ANAC58--------->ATHB12        --------->RAP2.6(2)   ttcctcagcctctgcaattgagccctcttcactctggcacttccttgatgtttaaccttcattgattcccacaattgtttggccgtctctttctgcgtga  23115300                                                                                            ---------                                                                                           <---------ANAC46                                                                                          <------NtERF2                                                                                          <---------LBD16                                                              --------->CCA1(2)           --------->ATERF1(1)                                                             --------->ARR14(2)          ------>NtERF2                                                           <---------TOE2(3)             <---------RAP2.3(1)                                                       <----------DOF2                  <---------ANAC46                                                      ------>ZmHOX2a(2)            <-----------RAV1(1) --->ZmHOX2a(2)                                      <------ZmHOX2a(2)             <---------MYB46(3) -ANAC58                                            --------->AGP1              <----------DOF2 -ANAC58          --------->ETT(2)                  --------->ARR11(3)         <----------DOF2------- -ANAC46  <---------MYB46(3)                        <---------ARR11(3)         <---------DAG2 <------   tcgtcttcagagtggttttgtcgatcgactgaaacagatagtttttggccttgagatctttgagatttgcatcatcaagtgccttttgttgcgccggatt  23115400                                                                      --------->GLK1(2)                                                                     --------->ARR11(3)                                                                     <---------ARR11(3)                                                                     --------->ARR14(2)                                                                     <---------GLK1(2)                                                                     <---------ARR14(2)                                                                    --------->HSFC1(2)                                                                    --------->HSFB2a(1)                                                                    <---------HSFC1(2)                                                                    <---------HSFB2a(1)                                           --------->ANAC46        ----------->ARR10 >LBD16            <-------TEIL            --------->ANAC58  ------>ZmHOX2a(2)                 ------ -->ARR14(2)   <---------TOE1(2)           --------->ANAC58<---------ARR14(2)               --------- ---ARR14(2)  ------>ZmHOX2a(1)   <---------WOX13(1)       --------->ARR14(2)              <---------ATHB12   ggggttttcaattctcctaagttcatcgaagcctggattgatgacacaccaatattctttggatcggagaagattctccatgatcaaactccaatgatcg  23115500                                             <---------HSFB2a(1)                                             --------->HSFB2a(1)                                            <---------ARR14(2)                                <---------ZAT14                                --------->ZAT14                             <---------ANAC46--------->HSFC1(2)                           --------->ZAT14  ------->TEIL                           <---------ZAT14  --------->GLK1(2)                           --------->ZAT18  <---------ARR11(1)                       <---------MYB46(3)   --------->ARR14(2)                       <-----------RAV1(1)  <-----------ARR10                       --------->ALFIN1    <---------ARR14(1)                     --------->At4g35610   <---------CCA1(2)                     --------->ZAT2<---------HSFC1(2)                     <---------ZAT2--------->HSFC1(2)                                    <---------ANAC55(2)                     <---------At4g35610   <---------GLK1(2)                      --------->ANAC58                     ----------->RAV1(2) --------->LBD16                 ------>ZmHOX2a(1)  ------->TEIL                   <-----------RAV1(2)  <---------HSFB2a(2)          <-----------GT1     --------->ANAC55(2) >ZmHOX2a(2)       --------->MYB46(3)   --------->HSFB2a(2)<----------DOF2        --------->ANAC58 >YAB1             ================RAV <---------LBD16  *TSS    <---------ZAT6    --------->ANAC46   tagtctccatcaaattttggaacagctggtgcagtgaagtttcccgaatctcccattctctctttagtgtttttcctctcaaacactcaatatgtatttg  23115600                        ------------>CBF          --------->CCA1(2)         <---------ARR11(3)         <---------ARR14(2)                               --------->ATHB12         --------->ARR14(2)                              <---------AHL20(2)         --------->ARR11(3)                          <---------AHL20(2)      <---------------AGL15                          --------->AHL20(2)      --------------->AGL15                    <---------ANAC58     <-----------------AGL2                    <---------ANAC46                --------->YAB1     ----------------->AGL2                --------->ATHB12                 <----------DOF2         <     ----------------->AGL1              <---------WOX13(1)                <---------ANAC58         -     ----------------->AGL3  ------------>CBF  <---------ANAC58            <---------ANAC58    ------   ctctgataccagatatagaaaacagagtcaatacaattctctgaatgattcgtgtttaattcattagactgaaattggcttttataagagccttacaacg  23115700                                     --------->ANAC46                           <---------ARR14(2)                           --------->ARR14(2)              <------ZmHOX2a(1)      --------->ANAC58            <---------TOE2(3)        --------->ANAC58   --------->ANAC58     --------->ANAC58   --------->ANAC46     --------->ANAC46                          <---------ATHB12   --------->ANAC58     --------->ANAC58                        --------->WOX13(1) ---------ARR14(2)    --------->MYB52(1)               --------->ANAC58           --------->ANAC58 -------->ARR14(2)--------->YAB1    ------------------------>ANAC81<---------ICU4 --------->ANAC58 ----->GT1 --------->MYB52(1) ----------->GT1          --------->ANAC58   ------>ZmHOX2a(1)   tgaatacgaaaactaaggaataagaaacggaactgaaaaacgaaacaaactcaaaacaagaaaactcaatcagttcctaaaaacaagctaagacttgact  23115800                                                                       <-----------ARR10                              <---------AtLEC2                         <---------ARR11(3)                           --------->YAB1                              --------->ARR11(3)                     ----------->RAV1(1)         <---------ARR14(2)    --------->GLK1(2)                     ------>MYB83                --------->ARR11(3)    --------->ARR14(2)           <   <---------WOX13(1)------>MYB46(1)             --------->ARR14(2)    <---------ARR14(2)    <------- --------->ATHB12 --------->ANAC46              <---------CCA1(2)     <---------ARR14(1)     <-------   tagtgattgacttattcaaaacccaacaattagcatggagagaaccaagtatatctggtctcaacgtttagagtatcttctggtctgggcgataggcttg  23115900                               <--------ATHB1   --------->At4g35610         --------->ATHB12   <---------ZAT2              -------->HAHB4   <---------At4g35610        <---------YAB1 ---------MYB52(1)          <---------ICU4                   --------->ARR14(2)                   <-- --ANAC58          ---------->DOF2 <-----------GT1           <---------ARR14(2)                 ----- --ANAC58      <-----------GT1--------->ICU4        --------->ETT(2)                 <---------YAB1   cccttagctgatagttttttccaaagaacataatgattcaccttcttaaactcgtctacagcaaaaccgtagatgctatctgagattagcattatcgatg  23116000                                                                    <----------DOF2                                                                --------->ARR11(3)                                     ----------->GT1            <---------ARR11(3)                                 --------->ANAC46             <---------KAN4(1)                           --------->ANAC58                   --------->HSFB2a(1)                           --------->ANAC58                  <---------KAN4(2)         --------->ATHB12--------->ANAC46                --------->HSFB2a(2)  --------->ANAC58        <---------YAB1   <---------ALFIN1           <---------ARR11(3)        --------->ANAC58  <-------TEIL --------->ZAT6    --------->ANAC58   --------->ARR11(3)   <----------DOF2            < -------YAB1----------->HVH21    --------->ANAC58  <---------CCA1(2)------>ZmHOX2a(1)              -- ---->YAB1 <---------WOX13(1)  <---------ALFIN1--------->At4g35610------>ZmHOX2a(2)            ------   atgatacatcacgattgacagtaatccacacccccatgccagttaaaacagctatatctctcgaatgatcctttcctttcaagcctgaaaccattttacg  23116100  Previous    Next  AGI:  At3g62455.1    Description:  transposable element gene. copia-like retrotransposon family, has a 7.1e-232 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family) Range:  from: 23111544    to: 23115556    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g62460.1    Description:  similar to PBS lyase HEAT-like repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G62530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40196.1); contains InterPro domain Protein of unknown function DUF537 (InterPro:IPR007491) Range:  from: 23115641    to: 23116600    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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