Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                <---------ZAT14  ----------->GT1              <---------ZAT18 ----------->GT1          <---------ZAT6 ------->GAMYB          --------->ALFIN1  ---------->DOF2         <---------STY1(1)<------------AtMYB77     ------- -------->ZAT18      <---------LBD16           <---------ALFIN1    <-----------GT1          ---------   tgagcgctggaagtagggcattctcagggagaaagtcaatagcaaacccagaccctagtgagagtttagtaactgtctcacaagtgaaaacttcaaaagg  23108300                                                 --------->ANAC58                                                 --------->ANAC46                                            --------->PCF2                                           ------>NtERF2                                          <---------ATERF1(1)                                          ------>NtERF2                                         ----------->HVH21                                       --------->ANAC46                                      <---------LBD16                  --------------->AtSPL8--------->LBD16     <---------ARR11(3)             --------->ARR14(2)     <---------ARR14(2)             <---------ARR14(2)                    ----------->GT1     --------->ARR14(2)  --------->ANAC46--------->ANAC46                 <---------MYB46(3)    <---------CCA1(2)   --------->MYB46(3)<---------ALFIN1      --------->ANAC46              -------    <---------GLK1(1) ------->TEIL  --------->GLK1(2)      --------->ANAC46   --------->ATHB12<------ -->DAG2    <---------ANAC58    --------->YAB1 <---------ALFIN1 <---------ANAC55(2)           <------ ->DOF2     <---------ANAC58   --------->AHL20(2)--------->ANAC58      --------->MYB52(1)     -------   cagtgtatatccttgtttgccatgtacccacaaataaaaatccgcgaccccacgcttgagcacaacacgtagagaacggttgatttgatcaaactgagca  23108400                                    --------->At4g35610                                    <---------ZAT2     <---------ARR11(3)             <---------ZAT14     ------->TEIL   <---------ARR11(3)         --------->ARR14(2)     --------->ARR14(2)             --------->ZAT14     <---------ARR14(2)             <---------At4g35610    --------->MYB46(3)    <---------CCA1(2)               --------->ZAT2         <---------MYB55(2) -->At4g35610       --------->ARR14(2)         <---------ARR14(2) ---ZAT2            <---------ARR14(2)         <-----------ARR10                        <---------HSFB2a(2) ---At4g35610       --------->ARR11(3)         <---------ARR11(3)                       --------->HSFB2a(2) -->ZAT2            <-----------ARR10          --------->ARR11(3)       <------ZmHOX2a(1)        <---   ggctctgtatcttcaggctcagtatcttcatcaaactgagcagagtcagtatcttcatcaaaccaccatttcaaggacaatttgtttactcgagaactgg  23108500                                                                                  ----------->GT1                                                                        ------>ZmHOX2a(2)                                                                       --------->ARR14(1)                                                                       <------ZmHOX2a(2)                                                                       --------->CCA1(2)                                                                      <---------ARR14(2)                                                                      <---------ARR14(3)                                                            --------->YAB1   --------->SPL7                                                      ------>MYB83    --------->ARR14(3)                                                      ------>MYB46(1) <---------ARR11(3)                                                    <---------MYB59   --------->ARR11(3)                                                    ------->GAMYB     --------->AGP1                                                 --------->MYB52(1)   --------->ARR14(2)                                               ================================HOX2a_HOX2a                                               ===============================HOX2a_HOX2a                     --------->ANAC46          ------>ZmHOX2a(1)      <---------AGP1                  <---------ZAT18             --------->TOE2(3)       --------->GLK1(2) ------ANAC46     <---------ETT(2)            --------->TOE1(3)     ----------->ARR10      <---------GLK1(2)   ctggaagagccattactctgtccacaaaatcagtaagactttctccatccttaaccgaactatcaaaatgaagatctggtacgatggtaaacagattatg  23108600                                                                                             --------                                 ----------->RAV1(2)      --------->ALFIN1                   <-------                             --------->ATERF1(1)        <---------O2                      ------>ZmHOX2a(2)                            <---------ATERF1(1)         <---------TGA1a                 <---------ARR14(2)                         <---------At4g35610  ====================bZIP_DOF      --------->HSFB2a(1)                         --------->At4g35610  ---------->DOF2      --------->GLK1(2)    --------->ARR14(2)                      ============================================bZIP_DOF      <---------HSFB2a(1)                      ---------->DOF2        <------ZmHOX2a(1) <---------At4g35610  <---------At4g35610                    <---------ZAT6      <------NtERF2   --------->O2       --------->HSFB2a(2)             <---------ZAT14--------->At4g35610         <-----------RAV1(1)<---------HSFB2a(2)<------ZmHOX2a(2)   ccaacgcttagagagaacagtagtgaaagcagcctccctggccgagaggaaagaaccgatgtggcagataatctcgtctggaagattgctgatccgatcc  23108700                                                                                                 <---                                                                                           --------->ZAT14                                                                                         <---------SPL7                                                                                        <---------ANAC58                                                                                        <---------ANAC58                                                                                        <---------ANAC46                                                                                      ------>ZmHOX2a(1)                                                                                  --------->ARR11(3)                                                                                  <---------ARR14(2)                                                                                  --------->ARR14(2)                                                   <----------DOF2                <---------ARR11(3) <----------DOF2                                 <------NtERF2                <------ZmHOX2a(1)  <--- ->ARR14(2)                                    <---------ZAT18            --------->TOE2(2)<---------ZAT14 --ARR14(2)                                    --------->ZAT18            --------->TOE1(2)--------->SPL7   atactttagcaaaccctagagacttcccttgtaatcttcaaaaccctagcccgcttcaagtgaataaaaccagtaatctaggaaaatcctccgtgcgcag  23108800                                            --------->ALFIN1                                          =======================bZIP_DOF                                          <---------ANAC58                                          <---------TGA1a                                          --------->TGA1a                                          --------->O2                                          <---------O2                                          <---------ANAC58                                          <---------ANAC46                                         <-------MYC3                                         ------->MYC3                                        --------->TGA1a                                        --------->O2                                        <---------O2                                        =========================bZIP_DOF                                        --------->ANAC58                                        <---------TGA1a  <---------ANAC58                                  <-------MYC2       <---------ANAC58                              <-                                  ------->MYC2      <------------------------ANAC81               ---                                  ------->MYC3   <---------ANAC58  <---------ANAC58      --------->O2                                  <-------MYC3----------->HVH21    <---------ANAC58    <---------ALFIN1                                 <---------ANAC58<---------ANAC46 --------->ZAT2      <------NtERF2<-                       ------------>CBF --------->ANAC58 <---------ANAC58            ------>NtERF2<-- ------------>CBF  --------->KAN4(1)  <---------ALFIN1<----------DOF2               --------->ANAC58 ---ZmHOX2a(1)     <---------KAN4(1)<-----------HVH21<---------ANAC58               --------->ANAC46 ------PCF5<---------AHL20(2)    <---------ANAC58<---------ANAC58------>ZmHOX2a(1)  --------->ANAC58-   gaccacaatgcattatatggattaatccaatgtaaacgtgccacgcgtgtgacttgctttcgttttcctgcttgccattctaaaccgcgccacttgaaat  23108900                              <---------------AGL15                              --------->TOE2(3)                              --------------->AGL15                             ----------------->AGL3                             <-----------------AGL1                             ----------------->AGL2                             <-----------------AGL3                             --------->MYB46(3)                             <-----------------AG                             ----------------->AG                             <-----------------AGL2                             ----------------->AGL1                     --------->AtMYB61                     <---------ALFIN1            <----------DOF2          ----------------->AGL1          --------->ANAC46  <---------WOX13(1)--------->MYB46(3)    --------->ANAC58 <------------CBF  ------>MYB46(1)        ----------->HVH21 --------AHL20(2)  ------>MYB83           --------->ANAC58 ------>AHL20(2)  --------->ORA47(1)    --------->CCA1(2)                --------->ATHB12 --------YAB1    --------->DEAR3(1)    --------->ARR14(2)        <------------CBF -------AHL20(2)--------->MYB46(3)     <---------ARR14(2)<---------MYB46(3)        <----------DOF2 -------->ATHB12--------->DEAR3(2)<------------CBF   <---------AtMYB61  <---------YAB1     ----------   tttaattggtttgcctaaaccgaccactctaaccaaaattggatacgacagcgttttggtgtttggacattgttatcatttgagacttttgaagaaagaa  23109000                                                                  <---------ANAC46                                                                  <------MYB46(1)                                                                  <------MYB83                                                                  ----------->GT1                                            --------->LBD16  --------->MYB111(1)                                           <---------ANAC58  --------->MYB52(2)                                           --------->HSFB2a(2)   --------->MYB59      --------->LBD16                              <---------At4g35610            --------->MYB111(2)     <---------LBD16                              --------->At4g35610   <---------ARR11(3)    <---------ICU4 ---------->DOF2                            <---------ZAT14<---------ANAC58  <---------MYB46(3)     <---------LBD16                            --------->ZAT14<---------HSFB2a(2)<-------GAMYB     <----------DOF2     <------ZmHOX2a(2)    --------->At5g28300       --------->ARR11(3)  <---------ARR11(3)    -------    --------->ARR14(2)------->GAMYB        <---------ANAC46  --------->MYB46(2)<---------ANAC58    <---------ARR14(2)<---------ALFIN1     <---------LBD16   --------->MYB55(2)<---------ANAC58 >DOF2               --------->MYB46(3)   <---------LBD16   <--------P  --------->ARR11(3)    <------   gaagcagatcgaaacaaattacaaccacggtgaactgaaacccttccgggcataaatcttgggtagttgggttaaatctttgcttcaccgggaaagtatc  23109100                                                                                          --------->GLK1(1)                                                                 ------>ZmHOX2a(2)        <---------GLK1(1)                                         <------MYB83<------ZmHOX2a(2)          --------->ATERF1(1)                                         <------MYB46(1)       --------->ARR14(2)     --------->ANAC58                                       <---------WOX13(1)      <---------ARR14(2)  <------NtERF2        --------->ARR11(3)         --------->HSFB2a(2)   --------->ATHB12       <------NtERF2        <---------ARR11(3)         <---------HSFB2a(2)------>ZmHOX2a(2)        <---------ATERF1(1)       <---------CCA1(2)          <---------LBD16   <---------ARR11(3)        <---------DEAR3(1)     --------->AHL20(2)        --------->GLK1(1)    <---------ARR14(2)       <---------LBD16      --- -->ARR11(3)                   <---------GLK1(1)    --------->ARR14(2)       --------->At4g35610  <-- ---ARR11(3)<---------LBD16   <---------ARR11(3)    --------->ARR11(3) <---------YAB1 --------->ANAC58   ttagaaattatatctctggatgatgaagacgagatttctggattggtatttgaagatcgcgattggatcggctattatcggcggaggcatggaattcttc  23109200  Previous    Next  AGI:  At3g62440.1    Description:  F-box family protein. Identical to F-box/LRR-repeat protein At3g62440 [Arabidopsis Thaliana] (GB:Q9LZP6); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G15620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63569.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 23107080    to: 23108702    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g62450.1    Description:  similar to hypothetical protein MtrDRAFT_AC140551g61v2 [Medicago truncatula] (GB:ABE91880.2) Range:  from: 23109120    to: 23109606    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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