Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       ----------->HVH21                                                                    <---------MYB59                 <                                                                   --------->At4g35610              -                                                                   <---------At4g35610            ---                                                               --------->LBD16                -------                                                          <----------DOF2                     <------                                                          ------>ZmHOX2a(1)                   -------                                                        ------>ZmHOX2a(2)                     <------          <---------WOX13(1)                           <------ZmHOX2a(2)                    ------->TEIL   <---------WRKY12                                   --------->ARR14(2)               ----------->RAV1(2)   <---------WRKY38(1)     --------->CCA1(2)          <---------ARR14(2)  ---------->DOF2  <---------ALFIN1   aacagtcaactaattgaattcttactgtgatatgagaaaaatccagtttcccatcggatcctttccgagacctgaccaaagacgaactcgcctgcacgtt  23091100                                               <---------At4g35610                                ------>ZmHOX2a(2)                               <------ZmHOX2a(2)             <---------MYB52(1)--------->CCA1(2) -------->HAHB4----------->GT1 --------->ARR14(1) <---------ICU4<---------MYB46(3)    --------->HSFB2a(1) <--------ATHB1--------->MYB52(2)    ------>ZmHOX2a(2) ---------ATHB51              --------->AGP1   --------->At4g35610  --------->YAB1 -------->ICU4 --------->MYB46(2)  <---------MYB52(1)        <---------DOF5.7(2) ------>YAB1--------->TOE2(3) --------->ARR14(2)           <---------MYB52(1) >MYC3 <---------At4g35610    <---------ARR14(2)           --------->DOF5.7(2) -MYC3 --------->At4g35610    <---------ARR11(3)          <-------GAMYB >MYC2 <---------ZAT2 <---------ICU4<------ZmHOX2a(2)     --------->TOE2(3)                   ------>ZmHOX2a(1) -MYC2 --------->ZAT2 <---------AHL20(2)      <-----------RAV1(1)  <---------YAB1   --------->YAB1   taataattcagcagcgttagttaataaatccagatccgatcgttcttactgctgctagttcgttaacccatgataatctccaaaaatcaaaacatcctcc  23091200                                                               --------->YAB1              <----------DOF2           ----------->GT1       <---------ATHB12               --------        ------->TEIL            --------->ANAC46            --------->WOX13(1)       <---------LBD16        --------->ARR14(2)    --------->ANAC58           --------->ANAC58          ------->TEIL------    --------->ANAC46          --------->ANAC58      <-----------RAV1(2)            --------->ARR14(2) --------->ZAT14              <---------ALFIN1    <-----------HVH21                <---------ARR14(2) --------->ZAT18    --------->ANAC58 --------->STY1(2)   --------->ANAC58          --------->GLK1(2) <---------ZAT14    --------->ANAC58 <---------STY1(2) <------ZmHOX2a(1)----------->GT1  ---------->DOF2   aactacactgaatctactttagaagcaaacacacacactagctagtaaaatcggtcaggaagcaatcagaacgatggataaaacgaatcgggaaagaaag  23091300                                         <-----------GT1                                     <----------DOF2                                  ------>NtERF2                --------->ZAT14                                 --------->RAP2.3(3)     <---------ALFIN1                                 --------->DEAR3(1)   --------->ARR14(2)                               --------->ABI4(1)      <---------ARR14(2)                               <---------At4g35610  --------->LBD16                               --------->At4g35610 --------->ANAC46                               --------->ZAT14    --------->LBD16                            ========                              --------->DEAR3(1)  <---------LBD16                            <------ZmHOX2a(2)                             --------->ANAC46     --------->At4g35610    <---------GLK1(1)  <--------  ---------->DOF2          --------->AtMYB61    <---------LBD16<---------ZAT14 <----------DOF2 -->DOF2----------->GT1    <---------ALFIN1   --------->ARR14(2)    <---------ZAT14  <------ZmHOX2a(1) ----->GT1                --------->MYB46(3)  <---------ARR14(2)   ----------->GT1   ===============HOX2a_HOX2a   aaaaaaaagagagataaacctcgacaaaaccaccgcagccttttatcgaatccgcggaaacaccgtagactgtagaaatcgctatgaggaaaacgatcag  23091400                       <------NtERF2==============bZIP_DOF                      <------NtERF2 --------->O2                      <---------RAP2.6(3)                      ------>NtERF2 <---------ANAC46                     --------->ATERF1(2)                     --------->RAP2.6(2)                     --------->DEAR3(1)                     --------->ANAC46                     --------->ANAC58  ---------->DOF2                     --------->ANAC58 --------->ALFIN1                                      <--------                     <---------ATERF1(2)  --------->At4g35610                              --------->ICU4        --------->HSFB2a(1)         <---------TGA1a                                        <---------YAB1       --------->ARR11(3)           --------->TGA1a             ----------->GT1          <---------ICU4       --------->ARR14(2)           <---------O2        --------->At4g35610              --------->ATHB12       <---------ARR14(2)        --------->ANAC46       ----------->GT1                  --------->YAB1       <---------ARR11(3)     ------->TEIL<---------At4g35610   --------->ATHB12        <---------YAB1       <-----------ARR10     <-----------GT1     ----------->HVH21                      --------->ICU4 ====================HOX2a_HOX2a ----------->HVH21    <------ZmHOX2a(1)               --------->YAB1 ---HVH21     ------>ZmHOX2a(1) --------->MYB46(3)--------->ZAT14              ---------->DOF2<------   agaatgacaaatcttcctactggccgccattgtacccgacgtgaagctccagtgaaggagctaaaatggttgaacttaagaaaaagaagaatgattattg  23091500                                                           <---------MYB46(3)                                                           <------MYB46(1)                                                           <------MYB83                                                          <---------AtMYB61                                                         <---------MYB52(1)                                                    ------>ZmHOX2a(2)                           ----------->HVH21      <---------ARR14(2)                        --------->MYB52(1)        --------->ARR11(3)                       --------->GLK1(1)          <---------ARR11(3)                       <---------GLK1(1)          <---------ARR14(3)                       --------->CCA1(2)          --------->ARR14(2)                      --------->ARR11(3)          <---------AGP1                <------ZmHOX2a(2)                 --------->ARR14(3)               --------->ARR14(2)           ------>ZmHOX2a(2)               <---------ARR14(2)     *TSS <------ZmHOX2a(2)            --------->ANAC46      ----------->HVH21<---------GLK1(1)            <---------ANAC55(2) --------->At4g35610<------ZmHOX2a(2)            --------->ANAC58    <---------At4g35610--------->GLK1(1)  <---------WRKY12    <---------ARR11(3)  <---------ARR14(2)  <<<<<<<<<WRKY18------>ZmHOX2a(2)--------->WRKY38(1)   <-------GAMYB               <----------DOF2 -ICU4      --------->ANAC58  --------->DEAR3(2) <---------CCA1(2)     <---------GLK1(2) ---YAB1   <---------LBD16 <---------SPL7 --------->ARR14(2)         <---------TOE2(3)      <--------   ttcgtcaatggagcacggatccaagatatcggaccgatgactccgatctgtagatctccgttggttttatcaaggttctcttgactctttagggcttaat  23091600                                                        <--------ATHB1                                                        -------->HAHB4                                                        --------->ATHB51                                             --------->AHL20(2)                                     --------->AHL20(2) <---------ICU4            --------->ATHB12                                <---------AHL20(2)     --------->AHL20(2)      <---------ANAC58                                --------->AHL20(2)     <---------ATHB51        <---------ANAC46                            <---------AHL20(2)   <---------AHL20(2)            <---------ANAC58                        --------->ICU4      --------->AHL20(2)    --------->AHL20(2)                      --------->YAB1 --------->AHL20(1)--------->ICU4     --------->At4g35610                    --------->AHL20(1) --------->AHL20(2)<------------CBF <---------ZAT2           --------->ZAT18  --------->AHL20(2)   --------->AHL20(2)       --------->ZAT2     <-------      ---------->DOF2 --------->AHL20(2) --------->ICU4<---------YAB1  <---------At5g28300 <---------At5g28300   <-----------TBP  --------->AHL20(2) --------->YAB1  <---------AHL20(2) <---------At4g35610-------- <----------DOF2   --------->YAB1   --------->YAB1   --------->YAB1   <-----------GT1   <---------ANAC58 --DOF2    <---------ZAT18 --------->AHL20(2)<---------AHL20(2)   <---------AHL20(2)    <---------ANAC58   gggctttataaagcccactaaaaataatatttaattaaaaataatatttaattaaaaataattgttttttaattacagctgtcgtgatttgcttaccgtt  23091700                         <---------At4g35610                         --------->At4g35610                       <---------WRKY38(1)                                        <---------ANAC58                       --------->ZAT14                                            <---------bZIP60(2)                       <---------WRKY12                                      <---------MYB46(3)                       <---------ZAT14        <---------MYB52(1)             <---------REM1(1)                    --------->WOX13(1)       --------->LBD16               <-------GAMYB                 <-----------TGA1           --------->HSFB2a(2)           <---------MYB46(3)          --------->ANAC58                  <---------HSFB2a(2)         ------->PIF5          --------->ANAC58                 <---------LBD16          <---------At4g35610          <---------ANAC55(2)          <<<<<<<<<CBP60g              --------->At4g35610          --------->ANAC55(2)          <<<<<<<<<SARD1               <---------ZAT2<---------ANAC58 <- --------AGL15   <-----------HVH21    ------>MYB46(1)               --------->ZAT2<---------ANAC46 <- ------->AGL15  --------->YAB1    *TSS------>MYB83      --------->YAB1  <-------PIF5--------->ALFIN1-   tgaagaagagtcaagtaatcgtcagtcaactgtagaaaccaaatttccggtagaaaaatcaaaatgcttcagctcgtggttgtagcgtggctcttgattt  23091800                 --------->ANAC46           <-------GAMYB          <---------MYB46(3)       ------------>AtMYB77      ----------->HVH21      --------->ARR14(2)      <---------ARR14(2)     <------NtERF2              --------->LBD16     --------->ATERF1(1)    <---------ARR14(2)    <---------ATERF1(1)     --------->GLK1(2)    --------->LBD16        --------->GLK1(1)   <---------DEAR3(1)      <---------GLK1(1)   <---------ANAC46       <------ZmHOX2a(1)                     <-------TEIL                     <---  <---------LBD16----------------->AGL1                        --------->CCA1(2)         --------->LBD16 --------At5g28300<---------MYB59           ----------->GT1    --------->GLK1(2)        <---------LBD16 --------LBD16 <-----------GT1<---------LBD16                 <---------ARR14(2)        --------->LBD16 -------->ANAC46------->TEIL--------->ARR14(2)               --------->GLK1(1)         <---------LBD16   tcacggcggagacggttgtacctcaccaggaatccggcgaatggagttgtgaatcggactcggagattcaggtcttagccgatttcagaccggggattat  23091900                                             --------->GLK1(1)                                           --------->LBD16                                         <------NtERF2                                        ------>NtERF2                                       <---------ARR14(2)                                       --------->ARR14(2)                                      --------->ATERF1(1)                                        ----                                     <<<<<<<<<AtERF-4                                            ----                                     ------>NtERF2                                               ----                                     <<<<<<<<<AtERF-3                                            <---                                     <---------RAP2.3(1)                                        <----                                     <---------ATERF1(1)                                        -----                                    <---------DEAR3(1)                                          <----                                    <---------RAP2.3(2) ------>NtERF2 <---------LBD16          <-----                                    <---------RAP2.3(3)<---------ETT(1)                        <-----                                    <---------RAP2.6(2)--------->DEAR3(1)                     ------>NtERF2                   --------->ATHB12--------->RAP2.6(3) ----------->HVH21  --------->SPL7      <------                  <---------YAB1 ----------->HVH21    --------->DEAR3(2)--------->LBD16      <-------        <-----------HVH21   <------ZmHOX2a(1)<---------GLK1(1)<---------ALFIN1   <------ZmHOX2a(2)<-- --------GT1    --------->YAB1   --------->WRKY12 --------->ANAC46    ------>ZmHOX2a(2)   -----------   caccctcgatggtcacaacgatgactggaaggacattgacggctccgagttcccgctccgacctgcacttgatccggactccgatcacgagtatgacgcc  23092000  Previous    Next  AGI:  At3g62360.1    Description:  carbohydrate binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO40133.1); similar to hypothetical protein OsI_001502 [Oryza sativa (indica cultivar-group)] (GB:EAY73655.1); similar to hypothetical protein OsJ_001395 [Oryza sativa (japonica cultivar-group)] (GB:EAZ11570.1); contains InterPro domain Collagen-binding surface protein Cna-like, B region (InterPro:IPR008454); contains InterPro domain Carbohydrate-binding-like fold; (InterPro:IPR013784) Range:  from: 23083761    to: 23091538    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g62370.1    Description:  carbohydrate binding / catalytic. similar to unnamed protein product [Vitis vinifera] (GB:CAO17420.1); contains InterPro domain Carbohydrate-binding family 9/cellobiose dehydrogenase, cytochrome; (InterPro:IPR008960) Range:  from: 23091734    to: 23094257    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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