Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     <-----------GT1 ---------->GT1 -------ANAC46                                                                                      < -------ANAC58                                                                 --------->ZAT14      < -------ANAC58 <---------ZAT6 ---------->DOF2                          <------ZmHOX2a(1)   <---------   acttgtaactagtttcagagttagagcaaaccaaaagagagagacataaaactaagaagaagcattgtagagaggaaacagtgtaatccatttcttttga  23062100                                   <------ZmHOX2a(2)                                  <---------ARR14(2)                              <-----------GT1                             <-------TEIL                            --------->CCA1(2)                           <---------GLK1(2)                           *TSS   --------->ARR14(2)                           <---------ARR14(2)                                     <---------AHL20(2)                           --------->ARR14(2)                                     --------->AHL20(1)                         <---------YAB1                                   ----------->GT1                       --------->YAB1                                   ---------->DOF2                      <---------ATHB12                             <---------ANAC58 ---------ANAC58  --------->AHL20(2)       <----------DOF2         <---------ANAC58 ---------ANAC58  <---------AHL20(2)------>ZmHOX2a(2)              <---------ANAC46             ----- -DOF2           --------->YAB1   <---------ARR11(3)          <----------DOF2     --------->AHL20(2)<   attcttgctactcagataattttaatcaagattcacgatctgaagcttttacatatagtaatgtctttggcttagaaagtcaaattttttgaatgtaagt  23062200                                                                                ------>ZmHOX2a(2)                                                                                =====================                                                                               --------->SPL7                                                                               ======================                                                                           ------>ZmHOX2a(2)                                                                 ------->TEIL  <------ZmHOX2a(2)                                                          <---------ATHB12 ==========================                                                         --------->ANAC58 --------->ARR14(1)                                                         --------->ANAC58 <------ZmHOX2a(2)                                                     --------->ANAC46     --------->CCA1(2)    <-----        <------------CBF  ----------->TBP            --------->ANAC58    --------->ARR14(2)   -------      <---------YAB1      <---------AHL20(2)         --------->ANAC58    --------->AGP1    <---------HSFB2a(2) --------->YAB1           --------->AHL20(2)       ---------->DOF2       <---------ARR14(2)--------->HSFB2a(2) <---------ICU4         ----------->TBP      ---------->DOF2  <---------ATHB12<---------ARR14(2) ------->CBF  --------->ANAC46        <---------AHL20(2)--------->WOX13(1)=========================== ---------ATHB12      --------->AHL20(2)  --------->TOE2(3) --------->WOX13(1)--------->ARR14(2) <---   caataagtactattgcaagtcgcattatataaatctctaaataatctcaaagtaaaagcaatcaatcaacctatagatccgatcggccatgttctataag  23062300                                  >>>>>>>>>SPL4      --------->ARR11(3)          >>>>>>>>>SPL7 <-----------HVH21                --------->SPL7                             ------->TEIL ===HOX2a_HOX2a                 <---------SPL7                         <---------AHL20(2) ===HOX2a_HOX2a                 --------->LBD16              <---------ARR14(2) ===HOX2a_HOX2a               --------------->AtSPL8         --------->ARR14(2)<---------MYB59 ----TOE2(3)          --------->AHL20(2)                 ----------------->AGL1<---------DAG2 -->YAB1              <---------AHL20(2)               <----------ID1 --------->AHL20(2) --------->AHL20(1) ===HOX2a_HOX2a      --------->YAB1            <---------WOX13(1)     <---------AHL20(2) <---------AHL20(1) ---ZmHOX2a(1)  <---------At4g35610         <---------AHL20(2)   --------->LBD16         --------->ARR11(3)   gattgtcagaacttgttgagctattaaaatactccgtacaacttatttgattaatatgggccaaatccgaaaataaatggaccttatcgaatattttgtt  23062400                                                                             ------>ZmHOX2a(2)                                                                           <---------ARR14(2)                                                                           <---------GLK1(2)        <                                                                           --------->ARR14(2)       <                                                                           --------->AGP1           <                                                                 ----------->HVH21                 <x                                                                <xxxxxxxxxxxxxxxsmallRNA(le3)      <x                                                                <xxxxxxxxxxxxxxxsmallRNA(si3)      <x                                                               --------->ANAC58                    <x                                                               --------->ANAC55(2)                 <x                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)       <xx                                                               --------->ANAC46                   <xx                                                               <---------ANAC55(2)                <--                                                               --------->ANAC58                   <xx                                                               <xxxxxxxxxxxxxxxxsmallRNA(le3)     <xx                                                              <xxxxxxxxxxxxxxxxxsmallRNA(le3)     ---                                                              xxxxxxxxxxxxxxxxx>smallRNA(se3)     ---                                                              xxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxx                                                              xxxxxxxxxxxxxxxx>smallRNA(fl3)     <xxx                                                              --------->TOE1(2)                  <xxx                                                             xxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <xxx                                                             <---------ALFIN1<xxxxxxxxxxxxxxxxsmallRNA(i)                                                             <xxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxx                                                             xxxxxxxxxxxxxxxx>smallRNA(si3)      ----                                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxx                                                         ------>ZmHOX2a(2) <-----------ARR10     <xxx                                                       <---------ARR14(2)  --------->ARR14(3)   <xxxx                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxx                                                      xxxxxxxxxxxxxxxx>smallRNA(i)              <xxxx                                                    --------->ALFIN1  <-----------HVH21        <xxxxx                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxx                                                   <xxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxx                                                  <---------ANAC46  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  <---------ANAC58  <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  <---------ANAC58 ------>NtERF2              <xxxxxx                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxx                                                <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxx                                                <xxxxxxxxxxxxxxxxsmallRNA(s)<------ZmHOX2a(2)<xxxxxxx                                               <xxxxxxxxxxxxxxxxsmallRNA(s)<---------ARR11(3)<xxxxxxx                       ----------->GT1        --------->ALFIN1xxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxx                       <----------ID1         <xxxxxxxxxxxxxxxsmallRNA(si3)--------->ARR11(3)<xxxxxxx                      --------->ZAT18         <xxxxxxxxxxxxxxxxsmallRNA(s) <---------ARR14(3)<xxxxxxx         --------->ZAT18                      <xxxxxxxxxxxxxxxxsmallRNA(i)<---------CCA1(2)  <xxxxxxx       --------->PCF2------------------------>ANAC81<xxxxxxxxxxxxxxxxsmallRNA(i)     ----------->HVH21   cgaagtccaggcccactaatcgagtgcgaaaaaacaaaaacaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctccc  23062500           --------->ANAC58           --------->ANAC58           --------->ANAC46          <---------LBD16   --------->At4g35610   <---------At4g35610  <xxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(fl3) -------ZAT2 <---------MYB52(1) xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxsmallRNA(si3) -------->RAV1(2) ------>ZAT2--------->LBD16 xxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxsmallRNA(si3) ----->MYB52(1)  *TSS  <---------HSFB2a(2) xxxxxxxxxxxxsmallRNA(fl3)  --------->At4g35610 xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxsmallRNA(fl3)            <---------AHL20(2) xxxxxxxxxxxxxxxxxsmallRNA(si3)            --------->AHL20(2) xxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->AHL20(1) xxxxxxxxxxxxxxxxxsmallRNA(si3)        --------->AHL20(2) xxxxxxxxxxxxxxxxxsmallRNA(i2)         <---------AHL20(2) xxxxxxxxxxxxxxxxxsmallRNA(i2)         <---------AHL20(1)                                  <---------ATHB12 xxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->YAB1                    --------->GLK1(2)    --------->ICU4 xxxxxxxxxxxxxxxxxsmallRNA(s2)    --------->AHL20(2)          --------->DAG2           ------------>CBF xxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->YAB1              ---------->DOF2    <---------AHL20(2)   aactgagctatccccgctacttgttatcgaagctaaaataataaaataaatacaaatatttgtaaaagcgagaatttgtgattttttttggcaataagta  23062600                                                                           <---------ZAT6                                                                       <------NtERF2                                                                      ------>NtERF2                              ==================================bZIP_DOF  >>>>>>>>>TAC1                              --------->TGA1a                         ----------->RAV1(1)                      ------>ZmHOX2a(1)                              --------->ETT(2)                  --------->ARR14(2)                              <---------DEAR3(1)               --------->ANAC46                                 --------->MYB52(1)              --------->LBD16 <---------TGA1a        <----------DOF2 ----------->HVH21        <---------ANAC58 *TSS<---------TOE1(2)<---------ANAC58 --------->AtMYB61                  <<<        <---------ANAC58 ------>ZmHOX2a(1)    <---------ANAC58--------->MYB46(3) --------->ZAT6<<<<<<   gagaatagttgtgttccacgattcctcctctcacgttcgaagaccatttcttgttctttggacgaccatcggcgacagtgttaagtctagagtcttcttc  23062700                                                 <---------ARR14(2)                                                 --------->ARR14(2)                                                 ------->TEIL                                           ------->TEIL                                           <---------ARR11(1)                      <--------P           --------->ARR14(2)                   --------->LBD16         <---------ARR14(2)                   --------->ANAC46        --------->GLK1(2)                        <----------DOF2                  <---------LBD16         <---------GLK1(2)             <---------ANAC58       <------NtERF2 --------->At5g28300  <---------ARR14(1)  <---------DAG2    <---------CCA1(2)     <---------ANAC46<---------MYB52(1) --------->DEAR3(1)    <----------DOF2 ------>ZmHOX2a(2) -----  <---------DEAR3(1)--------->LBD16  --------->DEAR3(1)      <------------------------ANAC81 <------- <<<<<<TBF1       --------->LBD16<-------TEIL   <---------CCA1(2)       <---------ANAC58     <------- <<<TBF1         <---------LBD16<---------MYB52(1)      <----------DOF2 --------->ANAC55(2)  <-------   ttcttcggcgtagttttttccccggtaagtctccgttcatcgccgaatctgtatccctctttctctttttgtttacttgatcgtctctttcgattatgta  23062800                              <---------ANAC46                           ------>ZmHOX2a(2)                                                        <                          <------ZmHOX2a(2)                                                         =                          --------->CCA1(2)                                                        <-                         <---------AGP1                                                            --                         --------->ARR14(2)                                                        --                         --------->AGP1                          --------->ATHB12                  <-                         <-----------ARR10                      --------->ICU4                     <-                         --------->ARR11(3)                     <---------YAB1                     --                         <---------ARR14(2)                   --------->bZIP60(1)               <----      ------>ZmHOX2a(2)  <---------ARR11(3)                   <---------bZIP60(1)           <--------P     <------ZmHOX2a(2)  <---------CCA1(2)                  ----------->HVH21         --------->TOE2(3) -->TEIL          --------->At4g35610                <---------TOE2(3)    <---------YAB1   <-------GAMYB --ANAC55(2)      <---------At4g35610                <---------YAB1   <---------ANAC58=============== --ANAC46      <---------MYB52(1)                 <---------MYB52(1)  <---------ANAC58------>ZmHOX2a(1) --YAB1       <-----------HVH21          <----------DOF2------->TEIL  <---------ANAC46===============   tatcgcgatcggagtccgtcatctccagatctgtgtgtatgcgcttaatttcgttatggatgtgacatgatttcttgtgattcgtttccttagggttgat  23062900           <---------AtLEC2         ===============================HOX2a_HOX2a         ===============HOX2a_HOX2a         ------>ZmHOX2a(1)     <---------ARR14(2)     --------->ARR14(2)                                                       --------->WOX13(1)     ------->TEIL                                                          --------->TOE2(3)    <---------CCA1(2)                                                     ----------->GT1 ------>ZmHOX2a(2)                                                        <---------ZAT6 ===============HOX2a_HOX2a                                        ------>ZmHOX2a(2) ------ZmHOX2a(2)                                                 <<<<<<<<<GATA-4 ===============HOX2a_HOX2a                                       <---------GLK1(1) --------ARR11(3)                                                 <<<<<<<<<GATA-2 ------->ARR14(2)                                                 <<<<<<<<<GATA-1 ------->ARR11(3)                                                 <------ZmHOX2a(2) --------ARR14(2)                               <-----------GT1   <<<<<<<<<GATA-3--------->YAB1 --------AGP1                               <----------DOF2      <---------AGP1 <---------ATHB12 ------->AGP1    ------>ZmHOX2a(2)        ---------->ID1         <---------ARR11(3) -----WOX13(1) <---------ARR11(3)    <---------GLK1(2)           --------->ARR11(3)        --------->AHL20(2) ======HOX2a_HOX2a<-------GAMYB--------->ARR11(3)               <---------CCA1(2)<---------ICU4 =======HOX2a_HOX2a<---------YAB1------>ZmHOX2a(2)    <------ZmHOX2a(2)  <---------YAB1    <---------AHL20(2)   agatctgtatcctgcatgatcgttatagatagtgatctagatttgtcttttttcagatcgaaatttagatctcttattgttaatcatgttgattttattg  23063000  Previous    Next  AGI:  At3g62280.1    Description:  carboxylesterase. similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G56670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40172.1); contains InterPro domain Lipase, GDSL; (InterPro:IPR001087) Range:  from: 23060398    to: 23062127    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g62285.1    Description:  pre-tRNA. tRNA-Phe (anticodon: GAA) Range:  from: 23062445    to: 23062517    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g62290.1    Description:  ATARFA1E (ADP-RIBOSYLATION FACTOR A1E); GTP binding / phospholipase activator/ protein binding. Identical to ADP-ribosylation factor 1 (ARF1) [Arabidopsis Thaliana] (GB:P36397;GB:Q7G9L3); similar to ARF1A1c (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT2G47170.1); similar to ADP-ribosylation factor [Capsicum annuum] (GB:AAF65512.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras small GTPase, Ra Range:  from: 23062625    to: 23064732    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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