Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->ZAT18        <------NtERF2      --------->ANAC46      --------->ANAC58      --------->ANAC58     --------->SPL7     --------->RAP2.6(3)    <---------ATERF1(1)   --------->DEAR3(1) <---------ZAT14 --------->ZAT14 <---------ZAT18                                       <------ZmHOX2a(1) ------->At4g35610                           =================HOX2a_HOX2a --------At4g35610                           <------ZmHOX2a(2)                       <---------WOX13(1) -----NtERF2      --------->YAB1  ==================HOX2a_HOX2a           ----------->RAV1(1) ------HVH21 --------->At4g35610  --------->LBD16    <---------TOE2(3)--------->ANAC58 -GLK1(2)    <---------At4g35610  ------>ZmHOX2a(1)--------->CCA1(2)  --------->ANAC58              -   cagcgcagacggcacagctatcatccatgtctcttcctgaatttgagatcgagataaggaaattgtttcgaaacgacaacaatagagattgatgagcaag  23047700            <---------HSFC1(1)            --------->HSFB2a(2)            <---------HSFB2a(2)            --------->HSFC1(1)   ------>ZmHOX2a(2)  <------ZmHOX2a(2)  --------->CCA1(2) --------->AGP1---------->DOF2                                           <---------ICU4 <---------ARR11(3)                                                      --------->YAB1 --------->ARR11(3)                                                     <---------ATHB12 >>>>>>>>>GATA-3                                                     ------>ZmHOX2a(1) >>>>>>>>>GATA-1                        *TSS                   --------->ARR11(3) >>>>>>>>>GATA-4                  ---------->DOF2          ---------->DOF2                      <---- >>>>>>>>>GATA-2         --------->ANAC58                <---------YAB1 --------->ICU4         <----- -------->GLK1(1)        --------->ANAC58         >>>>>>>>>TBF1<---------ARR11(3)    --------->WRKY18(1)   agagatctagggttctcgaaagagggctcgctaaataaaagggctagatgaagaagaatatcaaaggtctcctaatcatcaaggccagtcaaacaaatac  23047800                                                            <---------At4g35610   <----------DOF2                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        <---------REM1(1) <---------ZAT18                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       *TSS------->TEIL   --------->ZAT18                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxx>smallRNA(le3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->AHL20(2)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      --------->AHL20(2)                               xxxxxxxxxxxxxxxx>smallRNA(s)   <---------AHL20(2)                                  xxxxxxxxxxxxxxxx>smallRNA(si3)   --------->AHL20(1)                                  xxxxxxxxxxxxxxx>smallRNA(fl3)   <---------AHL20(1)                                  xxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->AHL20(2)               --------->ALFIN1   xxxxxxxxxxxxxxx>smallRNA(si3)  <---------ANAC58  <---------AHL20(2)             --------->DAG2    <---------LBD16     xxxxxxxxxxxxxxxx>smallRNA(se3)  --------->AHL20(2)    <---------AHL20(2)    --------->ATHB12         ---------->DOF2<---------ANAC58 -----ANAC55(2)  <-----------GT1---------->DOF2   <---------LBD16  xxxxxxxxxxxxxxxx>smallRNA(s) --TEIL<---------AHL20(2)----------->GT1    --------->GLK1(2) xxxxxxxxxxxxxxxx>smallRNA(fl3)   ataaataaattaatcgttgatactatttagttaaaaaagtgttgagaatcattcggggatgtagctcatatggtagagcgctcgctttgcatgcgagagg  23047900                           <---------YAB1                          --------->AHL20(2)                  <---------At4g35610        <-----------GT1                  --------->At4g35610     --------->YAB1                 ------->TEIL      <----------DOF2         <----------DOF2           ---------->DOF2            <---------ANAC58    <---------AHL20(2)       --------->At4g35610 <---------ZAT14            <---------ANAC58<---------AHL20(2)           <---------At4g35610 --------->ZAT14   xxxxxxxxxxxxxxxx>smallRNA(s) <-----------GT1 <----------DOF2              --------->ZAT18   cacagggttcgattccctgcatctccatttttattttcttttttttataacttttggtgagcttaatggcccaatagactgctctgtgaaagcccaaaac  23048000                                                                                                  ---                        --------->ANAC58                                                   --------->MYB46(3)                        --------->ANAC58                                                  <---------ZAT2                        <---------ANAC55(2)                                               --------->ZAT2                        --------->ANAC55(2)                          *TSS          --------->GLK1(2)             --------->MYB52(1)                                     --------->ARR14(2)    --------->At4g35610        --------->AHL20(2)       --------->At4g35610                <---------ARR14(2)    <---------At4g35610        --------->AHL20(1)       <---------At4g35610    ------>ZmHOX2a(1)     <---------YAB1     <---        <---------AHL20(2)  <------------CBF <---------STY1(1)  ----------->TBP--------->YAB1  <-----   taagcccaaataaaataagggtagtaacgtaattgagctaagaaaccctagaggtctccttcgcctacaaaatccccattttgataatcttcagcagccg  23048100                <------ZmHOX2a(2)               <-----------ARR10               --------->AGP1               --------->ARR14(3)               <---------AGP1--------->TOE2(3)               --------->ARR14(2)               <---------ARR14(3)               <---------ARR14(2)               <---------ARR11(3)                                   --------->ANAC46             <---              <---------CCA1(2) --------->MYB52(1)                  <---------ETT(1)             ----           <-------TEIL      --------->TOE1(3)                      ------->GAMYB               -----     ---------->DOF2        ----------------->AGL1                  ----------->HVH21           <---- --------->TOE2(3)  <---------ANAC46        --------->AtMYB61     --------->At4g35610           <---- ------>WRKY38(1)------>ZmHOX2a(2) <---------LBD16              --------->YAB1                  ----- ------MYB52(1)--------->ARR11(3) <---------ANAC46     <---------TOE2(3)     <---------ETT(2)  ------ ----MYB46(3)----------->ARR10 ----------->HVH21       <---------TOE1(3)------>NtERF2         -------   ttgcctcaaaagatgcagatcttcgtgaaaaccctaacggggaagaccataacccttgaggttgaatcatccgacaccatcgacaatgtgaaggcgaaga  23048200                                                                                ------>NtERF2                            <---------At4g35610                                 <---------ATERF1(1)                            --------->At4g35610                                --------->DEAR3(1)                            <---------ZAT2                             <---------ARR14(2)      --------->ANAC58      --------->ZAT2                             ------->TEIL      --------->ANAC58    <-----------RAV1(2)                          --------->ARR14(2) --------->ANAC46     ----------->HVH21                                --------->SPL7 ---ZmHOX2a(2)        --------->LBD16                                 <---------ALFIN1 ----->CCA1(2)        <---------SPL7            <------NtERF2        <---------SPL7 ---->ARR11(3)       --------->DEAR3(1)        ------>NtERF2        <---------ANAC58 -----ARR11(3)       --------->MYB46(3)        --------->LBD16      --------->RAP2.6(2) -----ARR14(2)     --------->MYB52(1)         <---------LBD16       <---------ANAC58 ---->ARR14(2)    <---------ALFIN1            --------->LBD16      --------------->AtSPL3   <-------- --->GLK1(1)  --------->GLK1(1)              <---------LBD16    <---------RAP2.6(2)         --------- ---->ARR10  <---------GLK1(1)     <---------WOX13(1)          --------->RAP2.6(3)   --------->REM1(1)   tccaagacaaggaaggaatcccaccggaccagcagcgattgattttcgccgggaaacagcttgaagacggccgtaccctcgccgactacaacatccagaa  23048300                                                                                           --------->YAB1                                  <---------MYB46(3)                                     --------->ANAC58                                 <---------AtMYB61                                       --------->ANAC58                                 <---------DEAR3(1)                            --------->ARR11(3)                                 --------->ALFIN1                              <---------ARR11(3)          --------->REM1(1)   --------->ALFIN1                      ------>MYB46(1)--------->ANAC58 --------->DEAR3(2)          --------->LBD16        >>>>>>>>>TBF1   ------>MYB83   --------->ANAC58 -HSFB2a(2)                 <---------ANAC46    <------ZmHOX2a(1)--------->ANAC46---------->DOF2 >HSFB2a(2)         ------>ZmHOX2a(1)  --------------->AGL15   --------->REM1(1)<------ZmHOX2a(2)  --   ggaatcgacgcttcatctcgtcctccgtctccgtggtggtgctaagaagaggaagaagaagacttacaccaagccgaagaagatcaagcacaagcataag  23048400                                                                             --------->ANAC58                                                                             --------->ANAC46                                              --------->DAG2               --------->MYB52(1)                                            ---------->DOF2                ---------->DOF2                                         <---------HSFB2a(2)              ----------->HVH21                                         --------->HSFB2a(2)          --------->ZAT18                                        ------>ZmHOX2a(2)             <---------ZAT18     <---------ZAT2                                        =============================HOX2a_HOX2a  ----------->RAV1(2)                                      --------->ARR11(3)           <---------ANAC58       --------->ZAT2                                      --------->ARR14(2)           <---------ANAC58       <---------At4g35610                                      <---------ARR14(2)          <------ZmHOX2a(1)       --------->At4g35610       --------->ZAT18                <---------AGP1        <---------TOE2(3)--------->ANAC58     <--     <---------At4g35610              ------->TEIL<-------TEIL<------ZmHOX2a(1)  -------->P xxxxxxxxx --------->GT1          <-----------GT1 =================================HOX2a_HOX2a  --------->ALFIN1   aaggttaagctcgctgttcttcagttttacaaaatcgatggatctggaaaggttcagcgtttgaggaaggagtgccctaacgcaacctgtggagctggga  23048500                                                       --------->WRKY12                                                   ------>MYB46(1)                                                   <---------TOE2(2)                                                   <---------TOE1(2)                 <-----------RAV1(1)                <---------YAB1                     ------>MYB83                     =================      <---------ANAC46                   <---------ZAT18             ======================HOX2a_HOX2a      <---------ANAC58                   --------->ZAT14      ---------->DOF2       ------>ZmHOX2a(2)      <---------ANAC58                   <---------ZAT14   --------->HSFB2a(2)    <---------ARR11(3) <---------AtLEC2                        --------->ZAT18   <---------HSFB2a(2)    <---------AGP1<---- --------DOF2--------->ICU4       <--------P     --------->TOE2(2)   <------ZmHOX2a(1)  <---------REM1(1) xxxxxxx>smallRNA(s)------>ZmHOX2a(2) --------->ALFIN1--------->DOF5.7(2)<---------REM1(1)     ------   ctttcatggcgagtcattttgatcgccattactgtggtaagtgtggactcacctacgtttaccagaaagaaggagttgaagcttgatctgttgtagcggt  23048600  Previous    Next  AGI:  At3g62240.1    Description:  zinc finger (C2H2 type) family protein. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G47090.1); similar to Os05g0279400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055084.1); similar to putative zinc-finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAS98500.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 23044417    to: 23047740    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g62245.1    Description:  pre-tRNA. tRNA-Ala (anticodon: TGC) Range:  from: 23047855    to: 23047927    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g62250.1    Description:  UBQ5 (UBIQUITIN 5); protein binding. Identical to 40S ribosomal protein S27a-3 (UBQ5) [Arabidopsis Thaliana] (GB:P59233;GB:P19233;GB:Q0WV69;GB:Q9M1P9); similar to UBQ6 (ubiquitin 6), protein binding [Arabidopsis thaliana] (TAIR:AT2G47110.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71283.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ribosomal protein S27a; (InterPro:IPR002906) Range:  from: 23048069    to: 23048772    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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