Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <---------ICU4                                     --------->ATHB12                                     -------->ATHB1                    <<<<<<<GRF7      <---------GLK1(1)                                    <---------ATHB12               <---------ANAC58  --------->ANAC55(1)                                    <---------YAB1           <---------MYB55(2)      --------->ANAC58                                    --------->ICU4          --------->ANAC58         --------->ANAC58                             ----------->GT1                --------->ANAC58--------->AHL20(2)          <---------MYB52(1)--------->ALFIN1                --------->ANAC46<---------AHL20(1)      ------>MYB83        <------MYB46(1)                 <-----------GT1   <---------AHL20(2)      ------>MYB46(1)     <------MYB83           ------>ZmHOX2a(1) <---------ANAC58  --------->ANAC46    --------->AtMYB61    <---------AtMYB61  ------>ZmHOX2a(2)--------->MYB46(3)  <-----------GT1 ->ZmHOX2a(1)  <---------At4g35610--------->GLK1(1)    --------->YAB1----------->HVH21  --------->GLK1(1)   actcgaccttcccttggtgctgatgggaaggtggagaaatcattgatcgtccttgtataatcacccaatgcctgacaaaaaatttacacgaaatccctta  23047300                              <---------YAB1                                    ----------->GT1                              <---------TOE2(3)                      --------->YAB1               ---                     --------->DAG2    --------->DAG2            <---------AHL20(2)               <--                    --------->MYB52(1)---------->DOF2          <---------ANAC55(2)           --------       --------->ATHB12   --------->At4g35610                  --------->ANAC55(2) --------->WOX13(1)      <-------TEIL  ---------->DOF2 >>>>>>>>>GATA-1      <---------YAB1<---------YAB1 --------->YAB1   tatatgcattcattgggggacataaaggagctaagatagataaagttcaaaacttcatcactattatgtaattgtaatagaagggcaattacaaaattct  23047400                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                -----                                                <---------ANAC55(2)                             <----      <-----------GT1                           --------->ANAC55(2)                            ------ ------>At4g35610                         <---------TOE2(3)                                   ------- -------At4g35610                 ----------->GT1                                        --------->AtLEC2 ->GLK1(2)                     --------->MYB52(1)                            <------ZmHOX2a(1)<------   agctgaattatctatttgatgcaattgaagagcaaacagtgattaagaaaacgtgatcaccttggtgacaaaaacgataggagactcggtcttgcagata  23047500          ==============HOX2a_HOX2a          ------>ZmHOX2a(2)        <---------ARR11(3)                                                       --------->ANAC58        --------->ARR14(2)                                                       --------->ANAC58        <---------ARR14(2)                                                   --------->ANAC58       <------ZmHOX2a(1)                   --------->ALFIN1                  --------->ANAC58 --------ZAT2                             <-------MYC3                  <-------TEIL --------At4g35610                        <-------MYC2                 <------ZmHOX2a(2) ------->At4g35610    ------->TEIL   --------->ANAC58                 --------->AGP1 ------->ZAT2         --------->GLK1(2)   ------->MYC2                --------->ARR14(2) ----->DOF2           --------->ARR14(2)  ------->MYC3                <---------ARR14(2)           <- ---TEIL--------->ARR11(3)      --------->MYB52(1)                    --------->ARR11(3)           <- --->CCA1(2)          <---------ARR14(2)------->TEIL        ----------->HVH21--------->ANAC46      -- -->ARR14(2)     <------ZmHOX2a(1)   --------->ANAC58       --------->WRKY38(1)  -------->P    <----- ---ARR14(2)  --------->HSFB2a(2)--------->SPL7<---------At4g35610    <---------ARR11(3)    <--------   cagcagcgaggatcgtcgaggacgaatcggagacgaacgacgcatgtggagcaaacctctcggtgaccacaagatccataggcaacccattcgagattgt  23047600        <------NtERF2        --------->ZAT18      --------->ANAC58      --------->ANAC46      --------->ANAC58     --------->RAP2.6(3)     --------->SPL7    <---------ATERF1(1)   --------->DEAR3(1) <---------ZAT18 --------->ZAT14 <---------ZAT14                                       <------ZmHOX2a(1) --------At4g35610                           =================HOX2a_HOX2a -----NtERF2                                 <------ZmHOX2a(2)                       <---------WOX13(1) ------->At4g35610--------->YAB1  ------>ZmHOX2a(1)  <---------TOE2(3)    ----------->RAV1(1) ------HVH21 <---------At4g35610  --------->LBD16  --------->CCA1(2)  --------->ANAC58 -GLK1(2)    --------->At4g35610  ==================HOX2a_HOX2a       --------->ANAC58              -   cagcgcagacggcacagctatcatccatgtctcttcctgaatttgagatcgagataaggaaattgtttcgaaacgacaacaatagagattgatgagcaag  23047700            --------->HSFB2a(2)            <---------HSFC1(1)            <---------HSFB2a(2)            --------->HSFC1(1)   ------>ZmHOX2a(2)  <------ZmHOX2a(2)  --------->CCA1(2) --------->ARR11(3)                                                      <---------ICU4 <---------ARR11(3)                                                      --------->YAB1 >>>>>>>>>GATA-2                                                        <---------ATHB12 --------->AGP1---------->DOF2                                       ------>ZmHOX2a(1) >>>>>>>>>GATA-1                        *TSS                   <---------ARR11(3) >>>>>>>>>GATA-4                  ---------->DOF2          ---------->DOF2                      <---- >>>>>>>>>GATA-3         --------->ANAC58                <---------YAB1 --------->ICU4         <----- -------->GLK1(1)        --------->ANAC58         >>>>>>>>>TBF1--------->ARR11(3)    --------->WRKY18(1)   agagatctagggttctcgaaagagggctcgctaaataaaagggctagatgaagaagaatatcaaaggtctcctaatcatcaaggccagtcaaacaaatac  23047800                                                            <---------At4g35610   <----------DOF2                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        <---------REM1(1) --------->ZAT18                                                       xxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                       *TSS------->TEIL   <---------ZAT18                                                       xxxxxxxxxxxxxxx>smallRNA(le3)                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       --------->AHL20(2)                              xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->AHL20(2)                               xxxxxxxxxxxxxxxx>smallRNA(se3)   --------->AHL20(1)                                  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------AHL20(1)                                  xxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------AHL20(2)                                  xxxxxxxxxxxxxxxx>smallRNA(si3)   --------->AHL20(2)               --------->ALFIN1   xxxxxxxxxxxxxxx>smallRNA(si3)  <---------ANAC58  <---------AHL20(2)             --------->DAG2    <---------LBD16     ---------->DOF2<---------ANAC58  --------->AHL20(2)    <---------AHL20(2)    --------->ATHB12         xxxxxxxxxxxxxxxx>smallRNA(se3) -----ANAC55(2)  <-----------GT1---------->DOF2   <---------LBD16  xxxxxxxxxxxxxxxx>smallRNA(s) --TEIL<---------AHL20(2)----------->GT1    --------->GLK1(2) xxxxxxxxxxxxxxxx>smallRNA(fl3)   ataaataaattaatcgttgatactatttagttaaaaaagtgttgagaatcattcggggatgtagctcatatggtagagcgctcgctttgcatgcgagagg  23047900                           <---------YAB1                          --------->AHL20(2)                  <---------At4g35610        <-----------GT1                  --------->At4g35610     --------->YAB1                 ------->TEIL      <----------DOF2         <----------DOF2           ---------->DOF2            <---------ANAC58    <---------AHL20(2)       --------->At4g35610 --------->ZAT14            <---------ANAC58<---------AHL20(2)           <---------At4g35610 <---------ZAT14   xxxxxxxxxxxxxxxx>smallRNA(s) <-----------GT1 <----------DOF2              --------->ZAT18   cacagggttcgattccctgcatctccatttttattttcttttttttataacttttggtgagcttaatggcccaatagactgctctgtgaaagcccaaaac  23048000                                                                                                  ---                        <---------ANAC55(2)                                                --------->MYB46(3)                        --------->ANAC58                                                  --------->At4g35610                        --------->ANAC55(2)                                               <---------ZAT2                        --------->ANAC58                             *TSS          --------->GLK1(2)             --------->MYB52(1)                                     <---------ARR14(2)    <---------At4g35610        <---------AHL20(2)       <---------At4g35610                --------->ARR14(2)    --------->ZAT2        --------->AHL20(1)       --------->At4g35610    ------>ZmHOX2a(1)     <---------YAB1     <---        --------->AHL20(2)  <------------CBF <---------STY1(1)  ----------->TBP--------->YAB1  <-----   taagcccaaataaaataagggtagtaacgtaattgagctaagaaaccctagaggtctccttcgcctacaaaatccccattttgataatcttcagcagccg  23048100                <------ZmHOX2a(2)               --------->ARR11(3)               <---------ARR14(3)               <---------ARR14(2)               --------->ARR14(2)               <---------ARR11(3)               <-----------ARR10               <---------AGP1               --------->ARR14(3)  <---------LBD16                  ------->GAMYB                <---              <---------CCA1(2) --------->MYB52(1)                  ----------->HVH21            ----           <-------TEIL      --------->TOE1(3)                      --------->ANAC46            -----     ---------->DOF2        ----------------->AGL1                  <---------ETT(1)            ----- --------->TOE2(3)  <---------ANAC46        --------->AtMYB61     --------->At4g35610           <---- ------>WRKY38(1)------>ZmHOX2a(2)<---------ANAC46              --------->YAB1                  <---- ------MYB52(1)--------->AGP1--------->TOE2(3)         <---------TOE2(3)     <---------ETT(2)  ------ ----MYB46(3)----------->ARR10 ----------->HVH21       <---------TOE1(3)------>NtERF2         -------   ttgcctcaaaagatgcagatcttcgtgaaaaccctaacggggaagaccataacccttgaggttgaatcatccgacaccatcgacaatgtgaaggcgaaga  23048200  Previous    Next  AGI:  At3g62240.1    Description:  zinc finger (C2H2 type) family protein. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G47090.1); similar to Os05g0279400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055084.1); similar to putative zinc-finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAS98500.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 23044417    to: 23047740    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g62245.1    Description:  pre-tRNA. tRNA-Ala (anticodon: TGC) Range:  from: 23047855    to: 23047927    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g62250.1    Description:  UBQ5 (UBIQUITIN 5); protein binding. Identical to 40S ribosomal protein S27a-3 (UBQ5) [Arabidopsis Thaliana] (GB:P59233;GB:P19233;GB:Q0WV69;GB:Q9M1P9); similar to UBQ6 (ubiquitin 6), protein binding [Arabidopsis thaliana] (TAIR:AT2G47110.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71283.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ribosomal protein S27a; (InterPro:IPR002906) Range:  from: 23048069    to: 23048772    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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