Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      ----------->GT1                   <---------ANAC46                  --------->DAG2                <---------HSFB2a(2)                   <---------ANAC58      --------->LBD16                          <---------LBD16                        <---------ANAC58     --------->ATERF1(2)                     --------->GLK1(2)                     <---------RAP2.6(2)   --------->MYB52(1)                       <---------GLK1(2)                     --------->At4g35610  ------->GAMYB  ---------->DOF2           --------->HSFB2a(1)                    <---------At4g35610 --------->MYB46(3)                       --------->ICU4                         --------->ALFIN1 -------->At4g35610                 <-------PIF5<---------ANAC46       <---------ANAC58 ---------At4g35610                 ------->PIF5--------->HSFB2a(2)    <---------ANAC58 ---ZmHOX2a(2)--------->YAB1      <---------LBD16--------->LBD16--------->ICU4  <------ZmHOX2a(1)  >>   tcaactgccggtgtaacaataaggcgatggaagagccacgggcaaagattccggaggtaacatgtattgatgagcttgtggaggagcggcttgcaatgga  23017700                                                                   --------->ATHB12                                                    --------->RAP2.6(3)                 <---------ANAC58                                                   <-----------GT1 <---------ICU4       <---------ANAC58                                             <---------TOE2(3)    --------->ICU4       <-------TEIL          --------->TOE1(3)           <----------DOF2             <---------YAB1     ------->MYC3          --------->TOE2(3)  <---------YAB1 <-----------GT1    <---------YAB1        <-------MYC3     <---------MYB52(2)      --------->AHL20(2)    --------->MYB52(1)        <---------AHL20(2)    --------->At4g35610      <---------AHL20(2)--------->TOE2(3)--------->YAB1  --------->ARR11(3)<-- >>>>>>>TBF1              <----------DOF2--------->YAB1  <----------DOF2     --------->AHL20(2) -----   agaagaagctaaccttgagaggccctctctttttattagtcttttataacgtttaacggctttgtatgattattgcaaataaaatcatgtgcgtctaatc  23017800                                <-----------HVH21                               <xxxxxxxxxxxxxxxxsmallRNA(i)                               ------>ZmHOX2a(1)                             ----------->RAV1(2)       <---------YAB1                          --------->GLK1(1)           --------->TOE2(3)                         --------->ARR14(2)         ---------->ID1                         ------->TEIL            <---------ICU4                         <---------ARR14(2)   --------->AHL20(2)                         <-----------ARR10    --------->YAB1                         <---------ARR11(1)   <---------ICU4                         --------->GLK1(2)    <--------ATHB1                        <---------ARR14(1)    --------->ATHB51                      <---------ANAC58        <---------AHL20(1)                  <---------ANAC58           <---------ATHB51                                       -                  <---------ANAC58     <---------ARR14(2)                                           <          <---------ATHB12--------->HSFB2a(1)--------->ICU4                                       ---      ------>ZmHOX2a(1) <---------CCA1(2)    <---------ATHB12         <-----------GT1            ----     --------->TOE2(3)<---------ANAC58 --------->ARR14(2)         <---------DAG2            --------- -------CCA1(2)  <---------At4g35610  --------->GLK1(1)------>ZmHOX2a(1)   <---------ALFIN1<-------TEIL ---->TOE2(3)   <---------YAB1 <-----------RAV1(1) <-----------GT1<----------DOF2 ---------->DOF2<---   ttatcttcctcaaacattctgcttgcgaatctcctgtcgcagttccaataatttttccttattgaaaactttttccctcacattgaaagcatattcatag  23017900                    <---------ICU4             ------>MYB83             ------>MYB46(1)           <---------MYB111(1)           <---------MYB59          <---------ANAC55(2)          --------->ANAC55(2)          --------->ANAC55(1)          --------->ANAC58 -------->ANAC55(2) --------->YAB1                                                                --- ---------ANAC55(2) --------->ATHB12                                                ---------->DOF2-- ------>CCA1(2)    <---------YAB1                                              ------>MYB83--------->WOX13(1) ----->ARR11(3) --------->AHL20(2)         --------->MYB52(2)                <---------MYB59  ------- >YAB1    --------->ANAC58      <---------YAB1   <-----------GT1          <-----------GT1------------ ------ARR11(3) <---------AHL20(2)        <-------TEIL          --------->YAB1 ------>MYB46(1)-------   atatgtaatgacacctaatttatcattgttttgtatgattctggttcgttttcacatctatgtctattatgtctatttaccaacttcaaagttcaattaa  23018000                                                               --------->MYB46(3)                                                 --------->TOE1(2)                                         <-----------HVH21*TSS<<<<<<<<<<<<<<<<<LFY                                        --------->At4g35610   >>>>>>>>>>>>>>>>>LFY  <----------ID1                        <---------At4g35610  <-----------GT1  ----------->GT1                       ----------->GT1   --------->YAB1 ------->DOF2                          --------->MYB59    <---------ICU4 ------->DAG2                          >>>>>>>GRF7------>ZmHOX2a(1)                --------->GLK1(2) -->YAB1                  <---------At4g35610 --------->ARR14(2)             ------>ZmHOX2a(1) >CBF  ---------->DOF2    --------->At4g35610 <---------ARR14(2)             --------->LBD16 -->AHL20(2)     <------------CBF   <-----------HVH21    <---------AHL20(2) <---------LBD16         -   aaaagggtcaaaagtactaaattgattccgatgaaacctgtcaggtcaaatcctactaaataataaccaatgggtattcctggagaatttgaaactcttg  23018100                              <-----------HVH21                             --------->WOX13(1)                       <-----------HVH21                     ------->MYC3                     <-------MYC3                     <-------PIF5                     <-------MYC4                     <-------MYC2                     ------->MYC4                     ------->PIF5                                              <---------HSFB2a(1)                     ------->MYC2     <-------GAMYB                            --------->HSFC1(2)                    --------->O2     <---------MYB46(3)                        <---------HSFC1(2)                    <---------TGA1a  ----------->GT1                       --------->ANAC58                    --------->ANAC55(2)                                    --------->ANAC58                    ==============================bZIP_DOF           <---------ANAC46                    --------->TGA1a <---------DEAR3(1)             --------->LBD16                    ==========================MYC_MYB            <---------LBD16                    <---------O2<-----------RAV1(2)            --------->ARR14(2)             <------ -------->CCA1(2)   <---------ANAC55(2)<----------DOF2         <---------ARR14(2)   ------>NtERF2   agatttgagttaacttgataccacgtgtcatccatcaggcggtttatcggagaagaagagtcttaaatccggcgagtaagaaactccgactgttttttga  23018200                     --------->ATHB12                    <---------YAB1                  <---------ANAC58                                          <------MYB83 <---------ANAC58                  <---------ANAC58                   <---------MYB46(3)     ----------->GT1               --------->DAG2            <------ZmHOX2a(1)                  <------MYB46(1)        <-       --------->ANAC58           <---------ANAC46  <--------P----------->GT1            <---------ANAC58       --------->ANAC58   <-----------RAV1(1)      <-------GAMYB           --------->MYB59      ----- ---YAB1      ---------->DOF2<---------ANAC46     <---------MYB46(3)       <---------TOE2(3)    -----   ttcagagctaagcaaaaaaagcgtgattgtgttgtggagtagaggaagaagatggttgatgagacagaaaaacctattaggttactcaatttcgtctccg  23018300                                                                <---------ANAC58                   <-                                                                <---------ANAC46               ======     <---------GLK1(2)                                  <---------AHL20(2)                     ------ -----ZmHOX2a(1)                          ----------->GT1       <---------ANAC58         <------MYB83 ---->HSFB2a(2)                           <---------ANAC46<---------YAB1                 <------MYB46(1) ---->LBD16                       --------->TOE2(3)    --------->AHL20(2)           --------->ATHB12   aggaacaggttctctctctctctctctctatcgaaaccctagttttgtgaaattcaatttaaaattgcttgttttttctgagaaattgatttggtgatcc  23018400                                                       ----------->HVH21                                                  <---------HSFB2a(2)                                                  --------->HSFB2a(2)                                              --------->KAN4(2)                                             --------->HSFB2a(1)       ------->TEIL                          <---------HSFC1(2)  <---------At4g35610      ---------->DOF2   --------->KAN4(1)                               <-------  --------->At4g35610   <------ZmHOX2a(1)    --------->HSFC1(2)                          <---------ZAT14 --------MYB52(1) ---------->DOF2            <---------KAN4(1)                          ------>ZmHOX2a(1) ==============================HOX2a_HOX2a   <---------HSFB2a(1)      <---------TOE1(1)--------->TOE2(3) >ZmHOX2a(2)  ---------->DOF2               <---------KAN4(2) <---------ZAT18   <-----------GT1   agttagatgaatcgaagaaagaaagaggagaaagagttgaagatggaacattccagagggacagggctctctacgaggtatttctccatccttcactgtc  23018500                                                                              ---------->DOF2                                                                          <----------ID1                                                                     ---------->DOF2                                                                   <---------YAB1                                                               <---------ARR14(2)             <------                                                               <---------GLK1(2)             <-------                   --------->ATHB12                            <---------ARR11(3)            --------                  <---------ATHB12   ------>ZmHOX2a(1)         --------->ARR14(2)          --------->ZAT18 ----RAV1(1)----------->GT1    <<<<<<<<<TBF1                   --------->ARR11(3)         <------ZmHOX2a(1)   gttttcagtcccatgagtaaatcattcgttttcttcttcctcacttgtaatgtgtttcaattgcagattttgaaagagaacaaagacaagaaggacgctg  23018600  Previous    Next  AGI:  At3g62130.1    Description:  epimerase-related. similar to catalytic/ pyridoxal phosphate binding [Arabidopsis thaliana] (TAIR:AT5G26600.1); similar to catalytic/ pyridoxal phosphate binding [Arabidopsis thaliana] (TAIR:AT5G26600.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO40231.1); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region, subdomain 1; (InterPro:IPR015421); contains InterPro domain Aminotransferase, class V/Cysteine desulphurase; (InterPro:IPR000192) Range:  from: 23015906    to: 23017981    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g62140.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO40232.1); contains domain PTHR13495 (PTHR13495) Range:  from: 23018058    to: 23019724    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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