Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <-------TEIL                                     --------->HSFB2a(2)                                   --------->At4g35610                                   <---------At4g35610                    ---------->DOF2    <---------ZAT14       <---------HSFC1(2)                       --------->YAB1 --------->YAB1    --------->ZAT14       --------->HSFC1(2)               --------->GLK1(1)     <---------YAB1    --------->ZAT18       --------->HSFB2a(1)         --------->MYB52(1) --------->YAB1           --- -------DOF2              <---------HSFB2a(1)        <---------ATHB12   <<<<<<<<<ARR2           <---- --DOF2      <------ZmHOX2a(2)  <<<<<<<<<TBF1    ----------------->AGL1 <---------ATHB12  <---------TOE2(3)   tttttgttcactgggatcagccattgcaaccttcttcttctgaaatgcattaccaataacgaaatccaattacaatcaaagttatgaaaatcaaggttta  23014900                                                      --------->ARR14(2)                                                ------>ZmHOX2a(2)                                               --------->GLK1(1)                                               <---------At4g35610                                               <------ZmHOX2a(2)                                               --------->At4g35610                                               <---------GLK1(1)                                              --------->ARR11(3)                                              <---------ARR14(3)                                              <---------ARR11(3)                                              <---------ARR14(2)                                              --------->ARR14(3)                                              --------->ARR14(2)          --------->MYB52(1)               --------->HSFB2a(2)      ------>MYB46(1)                      <---------HSFB2a(2)        --------->LBD16           <----      --------->ANAC58                    <---------LBD16        --------->GLK1(1)  --------->YAB1      --------->ANAC58                    <---------------ANT    <---------GLK1(1)  ------->GAMYB      ------>MYB83                       <---------LBD16      <---------TOE2(3)     --------->TOE2(3) ------>ZAT6                      --------->ANAC58    <---------ARR14(2)           --------->MYB46(3) -------GT1       ----------->GT1 --------->ANAC58    --------->GLK1(2)<---------MYB52(1)      <-----   tcactaccaagctaatggattagtaaaatcaatggcaagctacttcgggatctgcgaatcgtttgagatttccgtcaatttctcaaccaaaatcgagtta  23015000                                                 --------->TOE2(2)                                                 --------->TOE2(3)        --------->ANAC58                         --------->TOE1(2)        --------->ANAC46            ---------->DOF2        --------->ANAC58 <---------------------WRI1        --------->ANAC58 <---------ZAT14        --------->LBD16      <------ZmHOX2a(1) --------->ZAT14      <---------LBD16      <---------TOE2(3)              --------->ANAC46 <---------ZAT18    --------->ARR14(2)     --------->ANAC58--------->ANAC46 -----At5g28300     --------->GLK1(2)--------->DAG2    --------->CCA1(2)--------->ZAT6------>ZmHOX2a(1) ------GT1          <---------ARR14(2)     --------->ANAC58--------->ANAC58 ---------->DOF2      <---   ctgtccactcacacaaaaacaaaatccggcgaaaactaaaaagctaaggaacctaagaaacacgacaatggattacactaaagacatcctagcgaattac  23015100                --------->ANAC55(1)                --------->ANAC58                --------->ANAC58                                                                    <                --------->ANAC46                                                                    <                <---------ANAC55(2)                                                        <---------At4g35610                --------->ANAC55(2)                  --------->ARR11(3)      ----------->HVH21     <-               <---------LBD16                       <---------ARR11(3)    --------->At4g35610     <-              --------->MYB52(1)                     <-----------ARR10     <---------ZAT2  --------->ZAT2             <-------TEIL                         >>>>>>>>>TBF1            <---------At4g35610     <-           <---------GLK1(2)              --------->DAG2               <------NtERF2       --------->At4g35610     <---------YAB1                  <---------TOE2(3)                --------->LBD16      <---------ZAT2   --------->YAB1        --------->YAB1  ---------->DOF2             --------->DEAR3(1)  <---------ZAT14 ------MYB59--------->CCA1(2)        <---------TOE1(3)    -------->P<---------LBD16  <------ZmHOX2a(1)   caaaatcacaatagattcacggaacaataagaaacgtttgaggtaaagggaagaagaacttaccaatttcgccggagagctgaagcaggactgagctgaa  23015200         ---------->DOF2    <------NtERF2   --------->LBD16  <---------DEAR3(1)  --------->ALFIN1 --------->ATERF1(1) <---------------------WRI1                                                                     *TSS <---------LBD16                                                                            <-------- <------NtERF2 --------->At4g35610                                        <---------ANAC58 ---------- ---------RAP2.3(1)                                           ----------->GT1            <---------ANAC58 ---------ORA47(2)       --------->CCA1(2)                    <---------ANAC58--------->HSFB2a(1)  <- --------DEAR3(1)      --------->YAB1                         <---------ANAC58<---------HSFB2a(1)  == --------RAP2.3(3)  ---------->DOF2                 ----------->GT1       <---------ANAC58<----------DOF2 --------RAP2.3(2)--------->At4g35610 ---------->DOF2         <---------ZAT6 ------->TEIL<---------ANAC58   gacggcggagcaaaagaagcagcaaagataagagaagagagaaaggaatcgagagagcaaaatagcgttacaagttgcgaacgtttgactcgcttgacga  23015300                                           ----------->ARR10                                ------->MYC4                                <-------MYC3                                ------->MYC3                                <-------MYC4                                ------->PIF5                                <-------MYC2                                ------->MYC2 <---------ARR14(2)                                <-------PIF5 <---------AGP1                               ===================MYC_MYB                               --------->O2<------MYB46(1)                               <---------O2<------MYB83                               --------->TGA1a                               <---------TGA1a                               =================MYC_MYB                               <--------ABF1 --------->ARR14(2)                               --------->ANAC55(2)                   --------->AHL20(2)    <--------P                                               ---                   <---------AHL20(2)   <-------GAMYB                                           <----      --------->ANAC55(2)      <---------ANAC55(2)                                             <-----      <---------ANAC55(2)    <---------ALFIN1--------->ARR11(3)                                <-----    <-----------GT1--------->YAB1     <---------TOE2(3)                                        <----- -WRKY18(1)       <---------ATHB12    <---------TOE1(3)                                   <---------ATHB12 ->HVH21<---------ZAT14      <------------OsbHLH66                                    ------------>CBF ---------DOF2------------>CBF <---------ANAC46------>ZmHOX2a(2)                   --------->ANAC58 ========================================bZIP_DOF                                  --------->ANAC58--   gctttgttactgaacttccaattatatacggccacgtgttagggttggatctggtttttgcctaaatgcttagtttacatgggccaagcccaataagtca  23015400              --------->ATHB51              --------->AHL20(2)          --------->AHL20(2)          --------->ICU4      <-------TEIL <------ZmHOX2a(2)                                                                                  - ------>MYB46(3)                                                                                    - -----DOF5.7(2)     <-----------GT1                                                               <-- ----WRKY45   <---------AHL20(2)                               <---------ARR14(2)               <---- ----WRKY12--------->YAB1                       --------->AHL20(2)         <------ZmHOX2a(2)   ------ ----WRKY38(1)<---------ICU4         ---------->DOF2           --------->ARR14(2)            <------- ----->GAMYB --------->ICU4    <---------ANAC46 <---------AHL20(2)        <---------ARR14(2) --------   acgatcgatgcattaattatttatactatagttgtggagaaaagatggatttatattctaatccagtttcgcagtcgatccatttgcaacttgaataatg  23015500                                                                  <-----------GT1                                                               <---------ICU4   --------->WRKY18(1)                                         --------->YAB1  <-----------HVH21                   ----------->GT1         <---------YAB1 <------MYB83                       <---------YAB1            --------->ICU4             --------->TOE2(3) <------MYB46(1)          --------->AHL20(1)           --------->TGA1a                   --------->TOE1(3) -------->MYB46(2)        <---------AHL20(2)           <---------O2                   <---------ALFIN1 -------->MYB59           --------->AHL20(2)           ===================================MYC_MYB <-- -------MYB52(1)          <---------AHL20(1)   --------->WOX13(1)<---------YAB1      <---------ZAT18 -----MYB46(3)  --------->DAG2      --------->ICU4     --------->O2                --------->At4g35610 --->ICU4      ==================================================bZIP_DOF         ------->GAMYB   --- --ICU4        ---------->DOF2    --------->YAB1       <---------TGA1a           --------->MYB46(3) ->YAB1     --------->AHL20(2)    <---------ICU4    ------>ZmHOX2a(1)          <-----------GT1  -----   gttaggtcatggaataaaaaagctgtattttattactcatgagtaaaatcaatcctcacatgtcattataactcgacctagtaacagcccaccttaatgg  23015600                                --------->TOE1(3)                                --------->TOE2(3)                                --------->YAB1                              <-----------ARR10                             <---------CCA1(2)                           <---------WRKY38(1)           --------->AHL20(2)                           <---------WRKY12              <---------AHL20(2)   ---------->DOF2       <-----------HVH21            ----------->GT1 -------ZAT18            --------->At5g28300          --------->YAB1 ------>ZAT18           ------->GAMYB                <---------ATHB12              <---------CCA1(2) ---->PCF2           --------->MYB52(1)    <---------TOE2(3)           <---------YAB1   cccactaaagcccaaatttgaaataacggtcaaatcttaacatttaagttaacaaatgataaattagtagtatatgattaaactcaaatctaacaaggat  23015700                                                                           <---------AHL20(2)                                                                          <---------AHL20(2)                                                                          --------->AHL20(2)                                                                         <---------YAB1                                                                       -------->HAHB4                                        <---------TOE2(3)              --------->ATHB51                                        <---------TOE1(3)              <--------HAHB4                                  --------->AHL20(2)                   --------->YAB1                                  <---------AHL20(2)                   -------->ATHB1                                 --------->AHL20(1)                    <---------ICU4                                 <---------AHL20(2)                    <---------AHL20(2)                                 --------->AHL20(2)                   <---------YAB1             --------->YAB1 --------->AHL20(2)                        <---------ATHB51             <---------ICU4 <---------AHL20(2)                        --------->ICU4            <------ZmHOX2a(2)    <---------AHL20(1)--------->ANAC58 --------->YAB1     <---------YAB1        --------->YAB1   <---------ANAC46       <---------AHL20(2)    --------->ARR11(3)     --------->AHL20(2)      --------->ANAC58<---------YAB1    <---------ARR11(3)  --------->WOX13(1) <---------MYB52(1)      --------->AHL20(2)   --------->YAB1    <-----------HVH21 <-----------GT1     <---------AHL20(2)  <---------ATHB12<---------ANAC55(2)  <---------DOF5.7(2)--------->AHL20(2)                     <---   gcaaatgatcatcgatcatcacatgtcaattaaaatttatttaacgttgtgtaacgcatataaaatgatataattattaatttcactaaaattttgaatt  23015800  Previous    Next  AGI:  At3g62120.1    Description:  tRNA synthetase class II (G, H, P and S) family protein. similar to OVA6/PRORS1 (OVULE ABORTION 6), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G52520.1); similar to Bifunctional aminoacyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97739.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40229.1); similar to unknown [Populus trichocarpa] (GB:ABK95302.1); contains InterPro domain Aminoacyl-tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Prolyl-tRNA synthetase, class II, C-terminal; (InterPro:IPR016061); contains InterPro doma Range:  from: 23012005    to: 23015296    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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