Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                  ---                                                                                                  ---                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                  ----------->RAV1(1)     <---------ANAC58                                                                --------->At4g35610       <---------ANAC46                                                               --------->RAP2.6(2)     --------->TOE1(2)                                                             <---------ZAT2            --------->TOE2(2)               --------->ARR14(2)                            <---------At4g35610      ----------->RAV1(2)              <---------GLK1(2)                              --------->At4g35610     -------->P <---- ----------DOF2--------->GLK1(2)  <---------ANAC58           --------->ZAT2   --------->HSFB2a(2)<--- -------HSFC1(2)                  <---------ANAC58           <------NtERF2<----------DOF2 <---------ANAC58 ------>HSFC1(2)  --------->TOE2(3)<----------DOF2          ----------->RAV1(1)    --------->MYB46(3) --------------WRI1         <---------YAB1      --------->MYB52(2)================================RAV   agctttcaaagtctcagaatcgtcaacatgtttattgctttccaacatgtttgtttcatgggcagcagcaacatgactttgtggaacaacctgcgtgtcc  23001300                      --------->AtMYB61                      <---------ALFIN1                     --------->MYB46(3)                   --------->DEAR3(1)                   <---------ALFIN1                   --------->AtMYB61                  --------->MYB46(3) ------->LBD16  --------->DEAR3(1)                                                          <-------TEIL ------>ANAC46  <---------ALFIN1                                                            --------- ------>LBD16   --------->AtMYB61                                                        <------MYB46(1) --ARR14(2)    <------NtERF2                                                             <------MYB83 ->ARR14(2)    --------->MYB46(3)                                                       <------------ ----HVH21<---------bZIP60(1)                      ------>ZmHOX2a(1)                    --------->MYB59 -----LBD16   ------>NtERF2                   --------->GLK1(1)                         <------------ ---NtERF2--------->bZIP60(1)                 <---------GLK1(1)------>NtERF2       ------>ZmHOX2a(2)   ccgagatttgtgatggcaccaccaccaccatggatgatactcttcatgaaatcctcgttatactctgcctcatacaaatccatgatcgatttggtacgtt  23001400                             <----------DOF2                         ---------->ID1                     <----------DOF2                    ------>ZmHOX2a(2) <---------ARR14(2)                                            <                  <---------AGP1   --------->ANAC58                                          --------                  <---------ARR14(2)  <-----------ARR10                                   -----------                  --------->ARR14(2)  --------->ARR14(2)                              --------->TOE1(2)                  <---------ARR11(3)  --------->GLK1(2)            --------->ARR14(2)================ >SPL7            --------->ARR11(3) <---------GLK1(2)             <---------ARR14(2)----------->RAV1(2) ---AtSPL3       <---------CCA1(2) --------->ANAC58        --------->ANAC58      <----------DOF2----- ---AtSPL8   --------->TOE1(2)   <---------AtLEC2          --------->ANAC58   ------>ZmHOX2a(2) -----   gattatgcagagaaacgttggatctttggccctttgcaagaatctggccattctcaaacacaagctccatatactcttgatcgcttaacctgcaacaata  23001500                                                            --------->AHL20(2)                                                          <---------AHL20(2)                                                          --------->AHL20(2)    <------MYB46(1)                                     --------->AHL20(2)    <------MYB83                                        <---------AHL20(2)    ----------->GT1                                   --------->AHL20(2)   <---------MYB46(3)                                 <---------AHL20(2)   --------->MYB46(2)                               <---------AHL20(2)   --------->MYB111(2)                              --------->AHL20(2)  <---------MYB52(1)      --------->ANAC46        --------->AHL20(2)  <---------MYB55(1)      --------->ANAC58        <---------AHL20(2)<---------AHL20(2)  <--------P              --------->ANAC58      <---------AHL20(2)<---------AHL20(2) ---------MYB46(3)     <---------At4g35610      --------->AHL20(2)--------->AHL20(2) ->YAB1                <---------ZAT14        <---------AHL20(2)<---------AHL20(2) >RAV1(1)              --------->At4g35610    --------->AHL20(2)--------->AHL20(2) =RAV                  --------->ZAT14      <---------AHL20(2)<---------AHL20(2) ---->YAB1             <---------ZAT18      --------->AHL20(2)--------->AHL20(2) ---->ATHB51           --------->ZAT18    --------->AHL20(2)<---------AHL20(2)   atcggttggtaagaacatcatcgtctgcacacaaacacacacatatatatatatatatatatatatatatatatatgtgtgtgaaacagggaaacaagat  23001600                ----------->HVH21                           <---------KAN4(1)            <------MYB46(1)                                 --------->HSFB2a(1)  <---------ANAC46            <------MYB83        XXXXXXXXXXXXXXXXXXXXX>MIR447C    --------->HSFB2a(2)           --------->MYB59   <---------ANAC46      <---------ANAC58  ----------->GT1    <-----------------AGL3 --------->ATHB12        <---------ANAC58---------->DOF2  --------->ARR11(3)   <---------MYB46(3)      ---------->ID1--------->KAN4(2) <---------ZAT14  <---------ARR11(3)  --------->ALFIN1       <-----------RAV1(1) <---------HSFB2a(2)*TSS       ------   tgaagaacttaatttggtctgaaggtggatgatggggaagtcatattttgttgtcttgttgaatgttccaaaagttatttcttcagtggaagtaagtgaa  23001700                                                                                        <-----------GT1                                                                                      <---------YAB1                                                                                    <--------HAHB4                                                                                    --------->YAB1                                                             <----------DOF2       --------->ICU4 ---         <----------DOF2                                <----------DOF2   <---------AHL20(2)  <------  --------->GLK1(2)             <----------DOF2         <---------DAG2  <---------------AGL15<------- ---->DOF2        <<<<<<<<<<WRKY26           <---------AHL20(2)   <----------DOF2  <---------YAB1 <--   agctaatctttcttttgttgatcaacttcagactcttttgctcttattttatatttcgcttttctttccttttcatttttttggtattattatctctttc  23001800                       --------->ZAT18                    <---------At4g35610                    --------->At4g35610              <---------AHL20(2)          <---------ICU4                                              --------->TOE2(3)          --------->AHL20(2)                                        <-----------ARR10          --------->ATHB51                                          ------->TEIL   <---------TOE2(3)          <---------AHL20(2)                                        --------->GLK1(2)      <---------AHL20(2)            <-----------RAV1(1)             <---------ARR11(1)  <---------AHL20(2)      --------->AHL20(2)      ------->TEIL<---------ZAT14           --------->ARR14(2)<---------RVE1(1) -------->RAV1(2) ==============================RAV                 <---------ARR14(2)<---------CCA1(1) -----HVH21 <---------YAB1 <---------ATHB12      <---------ALFIN1  <---------CCA1(2) <---------ARR11(3) ---DOF2 --------->ICU4<-------TEIL ------>ZmHOX2a(1)   --------->AHL20(2)     <----------DOF2 -------At4g35610 <-----------RAV1(2)     --------->ZAT14          <---------ARR14(1)--------->ARR11(3)   acctgtttttaattattttttcaggtgcaatgaatttcctgttgtacagtaccactgtttatataagtcgaatcttagcatctttgagattttttttttg  23001900                       <---------YAB1                     --------->AHL20(2)                         --------->ANAC58                     --------->YAB1          <XXXXXXXXXXXXXXXXXXXXXMIR447C            <----------DOF2     --------->AHL20(2)  <---------ANAC58       --------->AHL20(2)     --------------->AtSPL8   <---------GLK1(2)     <---------ANAC58    <---------ANAC55(2)         - <---------DAG2  <---------AHL20(2) --------->AHL20(2)          --------->ANAC58            <------ZmHOX2a(1) <----------DOF2 --------->AHL20(2) <---------AHL20(2)   ----------------->AGL1         ---------->DOF2   atactttattgtgcctttataaattataaaaagattatttaaatgcaagggatgtcgtttccaaaaacgaaatcacataaaatacaaatagaaaggactt  23002000              <---------GLK1(1)        -------->HAHB4        --------->YAB1       <---------YAB1                                   <----------DOF2     --------->YAB1                                  --------->AHL20(1)    <---------YAB1 <-----------HVH21                 <---------ARR11(3)    <---------AHL20(2)                               --------->ARR11(3)   <---------AHL20(1)                                <---------AHL20(1)   --------->AHL20(1)            <---------WOX13(1) --------->RVE1(1)   --------->AHL20(2)   <---------GLK1(2)           --------->CCA1(1)       <----------ID1      ----- -------->AHL20(2)--------->ANAC46      ----------->RAV1(1)       --------->TOE2(3)         <--------   aaaaatataataatagacatccgtcagaatatcagattgccacaacatagacaaatatcttttgtaaacatcagtgaaacaacaaatctctgtttcacaa  23002100                                                                     <---------MYB46(3)                                                                   <-------GAMYB                                                                  <---------MYB46(3)                                                                 --------->ALFIN1                                                                ------->MYC3                                                                <-------MYC2                                                                <-------MYC3                                                                <-------MYC4                                                                ------->MYC4                                                                ------->PIF5                                                                <-------PIF5                                                                ------->MYC2                                                               <---------PIF3(3)                                <------ZmHOX2a(1)              <---------O2                              --------->ALFIN1                 <---------TGA1a                           <---------ANAC46                    ============MYC_MYB                          <---------LBD16                      --------->PIF3(3)       --------->ANAC58  <---------ANAC46                      --------->TGA1a       --------->ANAC58 --------->ALFIN1                     <---------ALFIN1      --------->SPL7  --------->ALFIN1                  --------->DAG2          --------->KAN4(1) <---------MYB52(1)--------->DAG2                      ---------->DOF2 <---------ANAC46 ---->MYB52(1)    ---------->DOF2                      ==================bZIP_DOF     --------->ZAT6 ---GT1<----------ID1 <-----------RAV1(1)    --------->MYB52(1)--------->O2    <---------KAN4(2)   accgatagtacgacaaaaaaaaaagtgttggggaggagagagagagagaacgggccaaaaagcccacgtggttgtgggaagaacattcacagtacaagaa  23002200  Previous    Next  AGI:  At3g62090.1    Description:  PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2); transcription factor. similar to PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40218.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 22999522    to: 23001684    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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