Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   --------->TOE2(3)            <---------YAB1                                                      --------->ATHB12          --------->CCA1(2)                                                     <---------ICU4         <---------ARR11(3)                                                     --------->YAB1         --------->ARR14(2)                                                     <--------HAHB4     --------->YAB1                                                             -------->ATHB1    <---------ATHB12                                                  <---------------AtSPL8 ------->YAB1                                                         <---------TOE2(3) ----AHL20(2)            ----------->GT1                --------->TOE2(3)      <---------ATHB12    <- ----YAB1--------->ARR11(3)                             --------->TOE1(3) <-------TEIL             <- --->AHL20(2)          ---------->DOF2               <-----------GT1---------->DOF2               <-- --DOF2  <---------ARR14(2)                    <----------DOF2  <---------------AGL15         <------ -------AGL15      <---------WOX13(1)       <---------ALFIN1   <-----------------AGL3     <---------YAB1 ------>AGL15    --------->ATHB12         <---------ALFIN1  --------->REM1(1)  --------->ICU4<-------   attgtaatcaagatatgtttgattgcaaagtaataaacaaaatcccacactttagaaaccttacatctattaaaggttcgaatcattagaacatgatgga  22950100 --------->ANAC58                                                   <---------SPL7 --------->AtLEC2                                                  <---------ANAC46 --------->ANAC58                                                 <---------AtMYB61 --------ANAC58                                                 <---------ANAC58 --------ANAC58                                                 <---------ANAC58              <------ -----TEIL----------->RAV1(1)    <-----------GT1                <---------ANAC46            --------- ---MYB46(3)      --------->ARR14(2) <----------DOF2         <---------AtMYB61             <---------YAB1 --WOX13(1)       <---------ARR14(2) <---------DAG2   ---------->DOF2                    <------ZmHOX2a(1)   tgcatgcaaatgcaacatggtatctgtataaagttttagctttttgagccttgaagaaaaggaatggtgtggtatgggaatagtgaagaaaggatgattg  22950200     <---------YAB1                  <---------ARR11(3)   <---------ICU4                    --------->ARR11(3)          <-----------GT1  --------->ICU4                    --------->At4g35610     <----------DOF2                        -- ---WOX13(1)              ---------->DOF2           <---------bZIP60(2)       <---------ANAC46  ----- >ATHB12 ---------->DOF2  --------->MYB52(1)     ----------->HVH21       <<<<<<<<<TBF1        <------   agacatcatgagaaagatgacacaaacccaaaggaagaagctctcttacccatgacatgtctcttttttaccttcttcttctgtgtaatttagaactgtc  22950300                                                                  <---------At4g35610                                              --------->ARR11(3)  <---------ZAT14                                              <---------ARR11(3)  --------->At4g35610                                             --------->CCA1(1)    --------->ZAT2       --------->ZAT6                                             --------->RVE1(1)    --------->ZAT14      --------------  ---------->DOF2                          --------->AHL20(2)     <---------ZAT2------>MYB83--------- ------->ANAC46                            --------->YAB1    --------->At4g35610------>MYB46(1) ---->PCF2                                <---------ATHB51--------->At4g35610   -------->P  --------- -----HVH21   <---------ALFIN1            <---------ATHB12<---------At4g35610 --------->MYB46(3)   <-   cccacaaagtctgtctccacttcaagacaaaactgcttccaccaataatatctctctctcatctgctctgctcagcctcaccaactcttacagtacccaa  22950400                                                                                      ---------->DOF2       --------->TOE2(3)            ------>ZmHOX2a(1)                              ----------->TBP       --------->YAB1          <---------At4g35610          <----------DOF2      <---------------AGL15 ->AtSPL8                      --------->At4g35610  ------------>CBF            ----------------->AGL3 >ANAC58                    <---------At5g28300    --------->ANAC46          <---------ZAT14 >ANAC58              <---------MYB52(1)        --------->ZAT14              --------->ZAT14--------- ------TEIL <-----------GT1<-----------GT1    --------->ANAC46    ---------->DOF2--------------->AGL15   atacatctatcttattacctctctgttttttacagctcctctgtttccactctactcaatagctttactaaagactcactgttctatataaagctaacag  22950500                                                                                 <-----------GT1                                                                                <---------YAB1                                                        <----------DOF2       --------->YAB1                        --------->At4g35610     <---------At4g35610          <---------YAB1                      --------->YAB1            --------->At4g35610        --------->YAB1                     *TSS                <---------ARR14(2)               --------->ICU4     <-------TEIL   --------->GLK1(2)    --------->ARR14(2)               --------->AHL20(2)       <- >MYB52(1)---------->DOF2        <-------TEIL------>ZmHOX2a(1)  --------->ICU4<---------ICU4    <----   ttacaagtccataaaagctcagaatcagaagagagtacatgagtttcctcttctgcctctttggtgattcttagcatttattattactcactcatcttct  22950600                                                                                  --------->ATHB12                                                                                <---------WOX13(1)                                                                                --------------->AGL15                                                                                =====================                       <---------ARR11(3)                                       <---------------AGL15                 ------>MYB46(1)                                               <---------AtLEC2                 ------>MYB83                                             <----------DOF2          --------->ANAC55(2)                                          ------->TEIL          <---------ANAC55(2)                   <------ZmHOX2a(1)     <---------CCA1(2) --------YAB1  <---------MYB46(2)      ----------->GT1    --------->MYB46(3)   <---------ANAC58     - ------DOF2    <---------MYB59        --------->DAG2     -------->P------->TEIL<---------ANAC58   <--   tttcattacattacataccaaacaagagctctcaaatggaaaggtttcaaggacacatcaacccctgtgtatgtatcttttgcttgatttagaaaacttt  22950700                                                                                             --------                                                                                             <-------                                                                                     <---------ICU4                                          <-----------GT1                        ------>ZmHOX2a(1)                                       <---------AHL20(2)                       <---------MYB59                                   <---------ICU4                              ----------------->AGL1     <----------DOF2               <--------HAHB4                              ====================== ================================================================================================MADS_MADS -------->ZAT6                     --------->YAB1                              ----------------->AG < ---------GT1 <---------ATHB12    <---------ATHB12            ------->TEIL <---------ICU4    <-------   taactctctttcttcaatctttctctcttcccttgaatcatttttttccatactcagagacatggacttgcatttactcattcctaattagtccagatac  22950800                                                            <---------ARR14(2)                                                            --------->ARR14(2)     <---------AHL20(2)                         ------>ZmHOX2a(1)    --------->AHL20(2)                         <---------MYB59 ->ARR14(2)                                   ----------------->AGL1    <---------AHL20(2) --GLK1(2)    <-----------RAV1(1)             ----------------->AG     --------->AHL20(2) ===============================================================MADS_MADS        <-----------RAV1(1) ---------ZAT18    <---------ANAC46  --------->At5g28300    <---------GLK1(2) <----------DOF2 --ARR14(2)<----------DOF2          ----------->GT1 <---------ICU4 <---------ZAT18    <---------ANAC46   tgtgcatttaatgcttttgttgtttgttttagagaaaacagtaacaattcctaattagtccagatactgtgcatttaatgcttttgttgtttgttttaga  22950900                            <---------ANAC58                            <---------ANAC58                          <-----------GT1                                         <---------ZAT14                      <---------YAB1                                              --------->ZAT14   -                    <---------ICU4                                       <---------ANAC58          --                    --------->YAB1                                 <---------AHL20(2)            <---                    <--------HAHB4<----------DOF2          <----------DOF2 <---------CCA1(2)   ------    --------->At5g28300<---------ICU4                     <------------------------ANAC81      ------   ----------->GT1 <---------ATHB12   <----------DOF2   <-----------GT1  <---------ANAC58    <-------   gaaaacagtaacaattctacaatcatttttgcttccctttctttgaaaacattccattttcctttctatttttttgcttatctctgtactaagaaccaaa  22951000  Previous    Next  AGI:  At3g61947.1    Description:  unknown protein Range:  from: 22950246    to: 22950362    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g61950.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G46810.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75452.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 22950521    to: 22952426    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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