Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <---------MYB52(1)                                                     <---------ARR11(1)                                                     <---------ARR14(2)                                                     <---------ARR11(3)                                                     <---------AGP1                                                     --------->ARR14(2)                                                     --------->GLK1(2)                                                    <---------ARR14(1)                                                    <---------CCA1(2)                                                   --------->LBD16                                                 <---------LBD16                                          --------->ARR11(3)                                      <--                                          <---------ARR11(3)<---------LBD16                       <-- <---------At4g35610                  <---------ANAC58  <-----------RAV1(1)                       --- <---------CCA1(2)                    --------->TOE2(3)------>ZmHOX2a(2)              --------->AHL20(2) -----TEIL                            <---------ANAC58<------ZmHOX2a(2)             >>>>>>>>>GATA-1 --ALFIN1                    <----------DOF2------>ZmHOX2a(2)  <---------SPL7     ----------->GT1 ---   ttcatctctctctctctctctctctctctctctttctcttccttgatcttagccggatctgttgggggacgaacacatgagagatagataaaatataaga  22933100                                                                                        xxxxxxxxxxxxx                                                                                        <-------GAMYB                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx               ------>MYB83                                                            xxxxxxxxxxxxxx               ------>MYB46(1)                                                         xxxxxxxxxxxxxx             <---------MYB59                                                           <-----------RAV1(1)             --------->TOE2(3)                                                         xxxxxxxxxxxxxx   --------->HSFB2a(2)                                                                 xxxxxxxxxxxxxx   <---------HSFB2a(2)                                                                 <xxxxxxxxxxxxx   --------->HSFC1(1)              --------------->AGL15                             xxxxxxxxxxxxxxxx   <---------HSFC1(1)              <---------------AGL15                             xxxxxxxxxxxxxxxx -------HSFB2a(1)         --------->ARR11(3)                                         *TSS -------HSFC1(2)          <---------ARR11(3)   >>>>>>>>>TBF1---------->DOF2         xxxxxxxxxxxxxxxx>smallRNA(s) ------>HSFB2a(1)      --------->DAG2       >>>>>>>>>TBF1  <---------AHL20(2)      --------->ZAT18 ------>HSFC1(2)      ---------->DOF2---------->DOF2   <------ZmHOX2a(1)   <----------DOF2   aatttctcgaaaaaacctaatagaaaaaggtctgtttcttaaagaagaagaagaagaggatttaaagagggatttttcttttgaggggactgttgtctgg  22933200                                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                                                              xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                              <-----------RAV1(2)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                                             xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                                                             xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                             xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                             xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                             xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            XXXXXXXXXXXXXXXXXXXX>MIR166A-G                                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                                                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                            XXXXXXXXXXXXXXXXXXXX>MIR165A/B                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                            xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                            xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                            xxxxxxxxxxxxxxxxxx>smallRNA(se3)   <------ZmHOX2a(1)                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxx>smallRNA(se3)                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxx>smallRNA(se3)                                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxx>smallRNA(fl3)                                                      xxxxxxxxxxxxxxxx>smallRNA(s) xxx>smallRNA(s)                                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxx>smallRNA(se3)                                                    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxx>smallRNA(se3)                              --------->ATHB12     xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxx>smallRNA(le3)                              <---------WOX13(1)     ----------->HVH21 xxxxxxxx>smallRNA(fl3)                          --------->ATHB12         <---------SPL7 xxxxxx>smallRNA(fl3)                           <---------YAB1          <------NtERF2 xxxxxx>smallRNA(se3)                           --------->ICU4         <-----------HVH21            < xxxxxx>smallRNA(s2)                        ------>ZmHOX2a(2)         <---------ANAC58             <- xxxxxx>smallRNA(si3)                      --------->CCA1(2)          <---------ANAC58            --- xx>smallRNA(s)                            <------ZmHOX2a(2)          <---------O2                <-- xxxxxxxx>smallRNA(si3)                   --------->ARR14(2)          <---------bZIP60(1)        <--- xxxxx>smallRNA(si3)                      <---------ARR14(2)          --------->bZIP60(1)        ---- xxxxxx>smallRNA(i2)                      --------->AGP1              <---------ANAC46      --------- xx>smallRNA(i)                           --------->ARR11(3)       <-----------RAV1(1)     --------->ANAC46 xxxsmallRNA(i)                           <---------AGP1  <---------TOE1(3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) >smallRNA(i)                             <---------ARR11(3)       =======================RAV-------- >smallRNA(s) <---------YAB1             <---------CCA1(2)<---------TOE2(3)xxxxxxxxxxxxxxxx>smallRNA(i)   ctcgaggactcttattctaatacaatctcatttgaatacattcagatctgatgattgattagggttttagtgtcgtcggaccaggcttcattccccccaa  22933300 <-----------GT1 --------->ZAT6                                                                                 <---- ---------YAB1                       ---------->ID1                                             <---- ----------GT1                  <---------ARR14(2)                                              ----- ------>YAB1                    --------->ARR14(2)                                             <----- -------ICU4                    <---------ARR11(3)                                    <---------AHL20(1) ------ATHB12                 ----------->ARR10                                       <---------ARR11(3) ----->ICU4            <---------TOE2(3)                ------>ZmHOX2a(2)             --------->AHL20(1) >ANAC46              --------->MYB52(1)         <----------DOF2                      --------->ARR11(3) ->LBD16     --------->ARR14(2) --------->ARR11(3)    --------->ARR11(3)   ------->TEIL        <-----   ttatcactccctcacaatccgaattaacgaagaagatttgtccattttcaacttttgatctagggtttctatctatgaatccatgtgatatatttcaata  22933400                                                        --------->ARR11(3)        <--------P                                                       <------MYB83              <---------MYB52(1)                                                 <-----------TBP                <---------At4g35610                                               <---------YAB1        --------->At4g35610                                             --------->ATHB51      ------>ZmHOX2a(2)                                             <--------HAHB4       <------ZmHOX2a(2)                                             --------->AHL20(2)  <---------ARR14(3)                                             -------->ATHB1      --------->ARR11(3)                                             <---------AHL20(2)  <-----------ARR10--------->ALFIN1   <---------ZAT6                   ----------->HVH21  <------MYB46(1)          <---------ZAT2 <---------ANAC46             <----------DOF2--------->YAB1      --------->ARR14(3) ----ATHB1               <-----------GT1     <---------ICU4      <---------ARR11(3)          <------- -----ICU4            <----------DOF2       <---------ATHB51     --------->ARR14(2) <------MYB46(1) ---->ATHB51         ------>ZmHOX2a(2)      <---------ATHB12     <---------ARR14(2) <------MYB83 ----ATHB12        <---------ARR11(3)       --------->ICU4       --------->AGP1 --------->ZAT2 ----ATHB51        --------->ARR11(3)   ------------>CBF<---------ARR11(3)    <-----------RAV1(2)   attcagtgtaaaacttagttcgatctttaactctttctctgactcaattatttttgtaggtcttcaagatcttctgagtttcaggtgggtttgatttttt  22933500                    <---------REM1(1)                    <---------YAB1                  --------->YAB1                                <---------YAB1                  <---------ICU4                              <---------ICU4                  -------->HAHB4                              --------->ATHB12                 <---------YAB1                               <--------HAHB4                 <---------ATHB12                             --------->YAB1                      ---          <------MYB83               <---------O2            <---------YAB1                       <--          <------MYB46(1)            --------->O2            --------->ICU4                      <---          ----------->GT1            ========================bZIP_DOF                            <---        <---------WOX13(1)           --------->TGA1a       --------->YAB1                        ----       <---------GLK1(2) <------ZmHOX2a(1)        ---------->DOF2       <----------DOF2 --------->ARR11(3)       <------------CBF  *TSS        <---------TGA1a    --------->WOX13(1)             --------->YAB1 --AHL20(2)      --------->ICU4      ========================bZIP_DOF   <---------DAG2<---------YAB1   ttttaaacagattggtgtaatgatgaaggagtctgactcatgtgagaaactaaaaagtctatcatcattactaactttttctctagctatgattttgtaa  22933600                                                                         -------->HAHB4                                                                         <---------ICU4                                                                         --------->ATHB12                                                                         --------->YAB1             <                                                                        <---------ATHB12         <---                                                                        --------->ICU4           ----                            --------->ANAC58                            <---------YAB1          <----                            --------->ANAC58                           <---------TOE2(3)       ------                        <------ZmHOX2a(1)                             --------->YAB1           <-----                   <-----------HVH21                                <---------YAB1       <----------DOF2  <---------AHL20(2)  >>>>>>>GRF7                                 --------->ATHB12    <-----------GT1 ------>ATHB12    <---------TGA2(1)                               <---------ICU4      <---------AHL20(2) -------ICU4      <---------bZIP60(1)                            <---------YAB1    --------->MYB52(2) ------YAB1       --------->bZIP60(1)                            --------->ICU4----------->GT1<------ ------ATHB12     --------->TGA2(1)                        ------>ZmHOX2a(1)  <---------TOE2(3)------ ----->ICU4    <---------YAB1               ----------->GT1--------->LBD16    <---------TOE1(3)<-----   tgattttttttttttttatgatgtcaggacaagttagcattcagagaggctaaatctattcctggtcatgattaatgattagggttatttactttcagat  22933700                                   ------>ZmHOX2a(2)                                  --------->CCA1(2)                                  <------ZmHOX2a(2)                                 --------->AGP1                                 <---------ARR11(3)                                 --------->ARR11(3)                                 <---------AGP1                          ------>ZmHOX2a(2)                         --------->CCA1(2)        --------->HSFB2a(2)      --------->ARR14(2)        <---------HSFB2a(2)      <---------ARR14(2)  <---------MYB46(3)     <------ZmHOX2a(2)  --------->MYB52(2)    --------->ARR11(3) ---------MYB52(1)      <---------ARR11(3)        ------>ZmHOX2a(2) ----TEIL               --------->ARR14(2)       <------ZmHOX2a(2) -->ZmHOX2a(2)          <---------ARR14(2)       --------->CCA1(2)                       <----------- --ZmHOX2a(2)           --------->AGP1          <---------ARR11(3)                  <---------ANAC58 --->ARR14(2)           --------->ARR14(3)      <---------ARR14(2)                  <---------ANAC46 ----GLK1(2)            <---------ARR14(3)      --------->AGP1                      <---------ANAC58 ---At4g35610           <---------AGP1          --------->ARR14(2)             <---------YAB1 --->AGP1              <---------CCA1(2)        --------->ARR11(3)            <---------TOE2(3) ----ARR14(2)         ----------->ARR10         <---------AGP1         <----------DOF2   ------------   ccgtttgtttctaaaaaatcaaaccagatctgctagatctgaagctagtagatctgagtctttcaaactactgctatatttatgtttcttgttagtacaa  22933800                                                     <---------AHL20(2)                      <-------                                             <----------DOF2                                <--------                                          <-----------GT1                                   <--------                                       <---------AHL20(2)                <----------DOF2   --------->ATHB12                                      --------->AHL20(2)              <-----------GT1    <--------P<- ----AtSPL8       <---------ICU4    <---------ARR11(3)               <<<<<<<<<<GT-3b     <---------WOX13(1) --->AtSPL8     <-----------TGA1    --------->ARR11(3)    <---------GLK1(2)     <----------DOF2 <----   ctattagccttagggtttcgtcattacattacttcaaagatttaatactttatatttatagattctcatatttttctttcttctttctctggttgattgt  22933900 --WOX13(1)                   --------->At4g35610 -ANAC58          <----------DOF2         --------->ANAC58             <---------GLK1(2) -ANAC58       --------->ANAC58           --------->ANAC58             --------->ARR11(3) --------YAB1  --------->ANAC58   <---------MYB52(1)                 ----------->ARR10             -- -----YAB1 <---------ALFIN1   <---------At4g35610  --------->At4g35610 <---------ARR14(2) --------->ICU4   tattgttctatccacactcgcattttgtcttcagcagttacttcaagcatggaagatgaagaaactctgatcagattttgtctaattttgcaatattgaa  22934000  Previous    Next  AGI:  At3g61897.1    Description:  MIR166/MIR166B; miRNA Range:  from: 22933185    to: 22933296    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g61898.1    Description:  unknown protein Range:  from: 22933525    to: 22933915    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version