Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      --------->ANAC58                                                                         --------    ----------->GT1                                                         --------->ARR14(3)    --------->ANAC58                                                        --------->GLK1(2)<------- -------DOF2                                                                --------->ARR11(3) ----->TOE2(3)                                                              <---------ARR11(3)      - ----->TOE1(3)   --------->At5g28300              ----------->GT1           <---------ARR14(3)      < ----------->AGL15          <---------GLK1(1)    --------->DAG2             <---------ARR14(2)    <-- ------------AGL15          --------->GLK1(1)   ---------->DOF2     <---------ANAC46         <------- -----GT1       ----------->GT1    ----------->HVH21               <---------TOE2(3)         --------   tttaacaagtaaaaaccatggtaaaatgagaaatccattgacatgtctcaaaaagtaaatccaaatgtttacgttgaaaatcttgaaacttgaaatattt  22932800                                                               --------->AtLEC2                                                            --------->MYB46(3)                                                          --------->ANAC58                                                          --------->ANAC58                                                      --------->PCF2        <---------WRKY18(1)                          --------->TCP15(1) ->AHL20(1)                                     --------->CCA1(2) --ARR11(3)                             --------->AHL20(2)--------->ANAC46 -------->ZAT6                        ----------->GT1<---------PCF2                   <---------ANAC58 -----------GT1             <---------ARR11(3) <---------ARR14(2)             <---------AHL20(2)    - ---------GT1               <---------AHL20(1) --------->ARR11(3)--------->HSFB2a(2)  <---------ANAC58 --AHL20(1)                 --------->AHL20(1) --------->ARR11(1)<---------HSFB2a(2)  <---------ANAC46 ->ARR11(3)      --------->TOE2(3)  ---------->DOF2 ----------->HVH21    <---------TOE2(2)      <----   ttacactgtttgaccaaaacataaatacaaaatattcacaaagtaaatagatatgggacccagccatccagaacccatgtttattttgtcttgtatagct  22932900                                                                           <---------ICU4                                                                          <---------ATHB12        <--          <---------ALFIN1                                                <---------YAB1     <------- --------->ID1                                  <-----------GT1         --------->YAB1 <---------ICU4 ------DOF2       <-----------GT1  <-----------GT1                  ------>ZmHOX2a(1)  --------->YAB1   ttggctctctctccacttacttactctcttgagtttttttctcttcttaaaaacctcttcttcacttatccttctcatcattctcttcatcatcaccaca  22933000                                                          <---------MYB52(1)                                                     <---------AGP1                                                     <---------ARR11(1)                                                     --------->ARR14(2)                                                     <---------ARR14(2)                                                     <---------ARR11(3)                                                     --------->GLK1(2)                                                    <---------CCA1(2)                                                    <---------ARR14(1)                                                   --------->LBD16                                                 <---------LBD16                                          <---------ARR11(3)                                      <--                                          --------->ARR11(3)<---------LBD16                       --- <---------At4g35610                  <---------ANAC58  <-----------RAV1(1)                       <-- <---------CCA1(2)                    --------->TOE2(3)------>ZmHOX2a(2)              --------->AHL20(2) -----TEIL                            <---------ANAC58<------ZmHOX2a(2)             >>>>>>>>>GATA-1 --ALFIN1                    <----------DOF2------>ZmHOX2a(2)  <---------SPL7     ----------->GT1 ---   ttcatctctctctctctctctctctctctctctttctcttccttgatcttagccggatctgttgggggacgaacacatgagagatagataaaatataaga  22933100                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        <-------GAMYB                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       <-----------RAV1(1)                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx               ------>MYB83                                                            xxxxxxxxxxxxxx               ------>MYB46(1)                                                         xxxxxxxxxxxxxx             <---------MYB59                                                           xxxxxxxxxxxxxx             --------->TOE2(3)                                                         xxxxxxxxxxxxxx   --------->HSFB2a(2)                                                                 xxxxxxxxxxxxxx   --------->HSFC1(1)                                                                  xxxxxxxxxxxxxx   <---------HSFC1(1)              --------------->AGL15                             *TSS   <---------HSFB2a(2)             <---------------AGL15                             xxxxxxxxxxxxxxxx -------HSFC1(2)          <---------ARR11(3)                                         xxxxxxxxxxxxxxxx ------>HSFC1(2)          --------->ARR11(3)   >>>>>>>>>TBF1---------->DOF2         xxxxxxxxxxxxxxxx>smallRNA(s) -------HSFB2a(1)      --------->DAG2       >>>>>>>>>TBF1  <---------AHL20(2)      --------->ZAT18 ------>HSFB2a(1)     ---------->DOF2---------->DOF2   <------ZmHOX2a(1)   <----------DOF2   aatttctcgaaaaaacctaatagaaaaaggtctgtttcttaaagaagaagaagaagaggatttaaagagggatttttcttttgaggggactgttgtctgg  22933200                                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                              <-----------RAV1(2)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                                                              xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                                                             xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                             xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                                             xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                             xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                            XXXXXXXXXXXXXXXXXXXX>MIR165A/B                                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                            xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                            XXXXXXXXXXXXXXXXXXXX>MIR166A-G                                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <------ZmHOX2a(1)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxx>smallRNA(s)                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxx>smallRNA(si3)                                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxx>smallRNA(se3)                                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxx>smallRNA(fl3)                                                      xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxx>smallRNA(se3)                                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxx>smallRNA(si3)                                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxx>smallRNA(fl3)                                                   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxx>smallRNA(fl3)                                --------->ATHB12     ----------->HVH21 xxxxxxxx>smallRNA(si3)                            <---------WOX13(1)     xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxx>smallRNA(i2)                             --------->ATHB12         <---------SPL7 xx>smallRNA(s)                                 --------->ICU4          <------NtERF2 xxxxxxx>smallRNA(se3)                          <---------YAB1         <-----------HVH21            < xxxsmallRNA(i)                             ------>ZmHOX2a(2)         <---------bZIP60(1)          <- xxxxxx>smallRNA(s2)                       --------->CCA1(2)          <---------O2                --- xx>smallRNA(i)                            <------ZmHOX2a(2)          <---------ANAC46            <-- xxxxx>smallRNA(si3)                      --------->ARR14(2)          --------->bZIP60(1)        <--- xxxxx>smallRNA(se3)                      --------->AGP1              <---------ANAC58           ---- xxxxxx>smallRNA(le3)                     <---------AGP1  <---------TOE1(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxx>smallRNA(se3)                   <---------ARR14(2)          <---------ANAC58      --------- xxxxxx>smallRNA(se3)                     --------->ARR11(3)       <-----------RAV1(1)     --------->ANAC46 >smallRNA(i)                             <---------ARR11(3)       =======================RAV-------- >smallRNA(s) <---------YAB1             <---------CCA1(2)<---------TOE2(3)xxxxxxxxxxxxxxxx>smallRNA(s)   ctcgaggactcttattctaatacaatctcatttgaatacattcagatctgatgattgattagggttttagtgtcgtcggaccaggcttcattccccccaa  22933300 <-----------GT1 --------->ZAT6                                                                                 <---- ---------YAB1                       ---------->ID1                                             ----- ----------GT1                  --------->ARR14(2)                                              <---- ------>YAB1                    <---------ARR14(2)                                             <----- -------ICU4                    --------->ARR11(3)                                    --------->AHL20(1) ------ATHB12                 ----------->ARR10                                       <---------ARR11(3) ----->ICU4            <---------TOE2(3)                ------>ZmHOX2a(2)             <---------AHL20(1) >ANAC46              --------->MYB52(1)         <----------DOF2                      --------->ARR11(3) ->LBD16     --------->ARR14(2) <---------ARR11(3)    --------->ARR11(3)   ------->TEIL        <-----   ttatcactccctcacaatccgaattaacgaagaagatttgtccattttcaacttttgatctagggtttctatctatgaatccatgtgatatatttcaata  22933400                                                        <---------ARR11(3)        <--------P                                                       <------MYB83              <---------MYB52(1)                                                 <-----------TBP                --------->ZAT2                                               <---------YAB1        --------->At4g35610                                             --------->ATHB51      ------>ZmHOX2a(2)                                             <---------AHL20(2)   <------ZmHOX2a(2)                                             --------->AHL20(2)  <---------ARR11(3)                                             <---------ICU4      <-----------ARR10--------->ALFIN1                                             <--------HAHB4      --------->ARR14(2)   <---------ZAT6                   ----------->HVH21  <------MYB46(1)          <---------At4g35610 <---------ANAC46             <----------DOF2-------->ATHB1      --------->ARR11(3) -----ICU4               <-----------GT1     --------->YAB1      <---------ARR14(2)          <------- ---->ATHB51          <----------DOF2       <---------ATHB51     <---------ARR14(3) <------MYB46(1) ----ATHB1           ------>ZmHOX2a(2)      <---------ATHB12     --------->AGP1 <---------ZAT2 ----ATHB51        --------->ARR11(3)       --------->ICU4       --------->ARR14(3) <------MYB83 ----ATHB12        <---------ARR11(3)   ------------>CBF--------->ARR11(3)    <-----------RAV1(2)   attcagtgtaaaacttagttcgatctttaactctttctctgactcaattatttttgtaggtcttcaagatcttctgagtttcaggtgggtttgatttttt  22933500                    <---------YAB1                    <---------REM1(1)                  -------->HAHB4                                <---------YAB1                  --------->YAB1                              --------->ATHB12                  <---------ICU4                              --------->YAB1                 <---------YAB1                               <--------HAHB4                 <---------ATHB12                             <---------ICU4                      ---          <------MYB83               ========================bZIP_DOF                             <--          ----------->GT1            --------->O2            --------->ICU4                      ----          <------MYB46(1)            <---------O2            <---------YAB1                      <---        <---------WOX13(1)           <---------TGA1a       --------->YAB1                        <---       <------------CBF  *TSS        --------->TGA1a    --------->WOX13(1)              --------->ARR11(3)       <---------GLK1(2) <------ZmHOX2a(1)        ---------->DOF2       <---------DAG2<---------YAB1 --AHL20(2)      --------->ICU4      ========================bZIP_DOF   <----------DOF2--------->YAB1   ttttaaacagattggtgtaatgatgaaggagtctgactcatgtgagaaactaaaaagtctatcatcattactaactttttctctagctatgattttgtaa  22933600                                                                         <---------ICU4                                                                         --------->ATHB12                                                                         --------->YAB1                                                                         -------->HAHB4             <                                                                        <---------ATHB12         ----                                                                        <---------YAB1           <---                            --------->ANAC58                            --------->ICU4          <----                            --------->ANAC58                           <---------TOE2(3)       <-----                        <------ZmHOX2a(1)                             --------->YAB1           ------                   <-----------HVH21                                <---------YAB1       <----------DOF2  <---------AHL20(2)  >>>>>>>GRF7                                 <---------ICU4      <---------AHL20(2) ------>ATHB12    <---------TGA2(1)                               --------->ATHB12    <-----------GT1 -------ICU4      <---------bZIP60(1)                            <---------YAB1    --------->MYB52(2) ----->ICU4       --------->TGA2(1)                              --------->ICU4----------->GT1<------ ------YAB1       --------->bZIP60(1)                      ------>ZmHOX2a(1)  <---------TOE2(3)------ ------ATHB12  <---------YAB1               ----------->GT1--------->LBD16    <---------TOE1(3)<-----   tgattttttttttttttatgatgtcaggacaagttagcattcagagaggctaaatctattcctggtcatgattaatgattagggttatttactttcagat  22933700  Previous    Next  AGI:  At3g61897.1    Description:  MIR166/MIR166B; miRNA Range:  from: 22933185    to: 22933296    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g61898.1    Description:  unknown protein Range:  from: 22933525    to: 22933915    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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