Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <------MYB83                                                                                            ---------                                                                                            <--------                                                                                       <---------TOE2(3)                                                            <------MYB83              <---------DOF5.7(2)                                                           --------->MYB111(1)      --------->DOF5.7(2)                                --------->HSFB2a(2)       <--------P               <----------DOF2                            --------->KAN4(2)            <---------SPL7         ----------->RAV1(1)                           --------->HSFB2a(1)          <---------MYB46(3)    <---------At4g35610                           <---------HSFB2a(1)          --------->MYB55(2)    --------->At4g35610   -                         <------ZmHOX2a(1)             <---------AtMYB61      --------->ZAT2<------MYB46(1)                        --------->ANAC58             <---------MYB46(3) ---------->DOF2<---------TOE1(3)                 <---------At4g35610             <-----------RAV1(1)  ======================RAV  <---    <-------TEIL <---------ZAT18<---------HSFC1(1)  --------->ALFIN1  <---------HSFB2a(2)  <---------AtMYB61 ----------->GT1 --------->ZAT14<---------HSFB2a(2) <---------AtMYB61 <-----------RAV1(2)  <---------DEAR3(1) ---------------AtSPL8  --------->ANAC58      --------->ZAT6<------MYB46(1)--------->At4g35610<------   ggagggtacatagaattggtgcagacaggacattcgagaagctcatgaacactggtggtggtagggagaagcccagaagcagcagcattaacgttggtgg  22884400                                                          ------>ZmHOX2a(2)                                                         <---------GLK1(1)                                                         --------->GLK1(1)                                                        --------->ARR11(3)                                                        <---------ARR14(2)                                                        --------->ARR14(2)                                                ------>ZmHOX2a(2)                                               <------ZmHOX2a(2)                                              --------->ARR14(2)                                              <---------ARR14(2)                                              <---------ARR11(3)                   <---------ANAC58           --------->ARR11(3)    --------->At4g35610     <---------YAB1<---------ANAC46   ================HOX2a_HOX2a   <---------At4g35610<-------------  <---------YAB1   <---------ANAC58   ===========================HOX2a_HOX2a        <--------P >MYB52(2)        --------->ATHB12    =================HOX2a_HOX2a  ----------->RAV1(2)<------------- -MYB46(3)  --------->YAB1            <------ZmHOX2a(1) <---------AGP1 <-----------HVH21 ---------->GT1  <---------YAB1  <---------ANAC58       <---------ARR11(3)        --------->ATHB12 -- ------ANAC46 <---------YAB1     <---------ANAC58      <---------CCA1(2)          <---------MYB46(3) ---AtMYB61<---------YAB1        <---------ANAC46     <---------MYB46(3)      <-------TEIL --------->ZAT14   tgttgttattagtatgatgatgcttggaaacagaagcgtaggaatggcgatcttggtggatctcttcatcatctgtcacatccatggttgatgtacagtc  22884500                                                                     --------->ANAC46                                                                     <---------ANAC55(2)                                                                     --------->ANAC55(2)                                                                    <---------LBD16                                                                  --------->ARR14(2)                                        <---------ARR11(3)        --------->GLK1(2)                                        --------->ARR11(3)        <---------ARR14(2)               <-                         --------->ALFIN1 ------>ZmHOX2a(2)  <------ZmHOX2a(2)                     <-                      <XXXXXXXXXXXXXXXXXXXXMIR1886.3        --------->ARR11(3)                    ---                      --------->DAG2 <---------WOX13(1)     <---------ARR11(3)                   <--- --AtSPL8--------->ARR14(2)       <---------YAB1        ---------->DOF2               --------->AtMYB61 --AtSPL3<---------ARR14(2)     <----------DOF2       --------->ANAC58                <---------ALFIN1 ------->AtLEC2     ---------->DOF2--------->ATHB12   --------->ANAC58--------->LBD16 --------->DEAR3(1)   catgctatccaaatccattgaagaaaggtggagactttgattgatcttcgatcgaaacgaaagatcaaaatccggaattgaagaaacaccaccgaaacag  22884600             --------->ALFIN1           <---------ANAC46         <---------ZAT14                                                                     <------NtERF2      --------->O2                                                                          ------>NtERF2   ------->GAMYB                                                                            <-------- --------WRKY38(1)                                                                          <-------- --------WRKY12                                                                            <---------ATERF1(2) ------>WRKY18(1)                           <---------GLK1(2)                              --------->ATERF1(2) --------HVH21  ----------->GT1     ---------->DOF2                                  --------->MYB52(2)   gtcaaccctcgtgaagtgttgttaattttcaaaaacaaaaaagatagatgctcttcttcatcaattctctagagagagagagagagatagttgccgtcaa  22884700                                          <---------DEAR3(1)                                         --------->At4g35610                                         <---------At4g35610                                         --------->ATERF1(1)                                         <---------ZAT2                                         <------NtERF2                                        ------>NtERF2                                       <---------RAP2.6(2)                                   ---------->DOF2                                  ---------->DOF2                             <-----------HVH21                            ----------->GT1      ---------->DOF2      --------->ARR14(2)  --------->SPL7<---------ERF1      <---------ARR14(2)----------->HVH21<-------GAMYB                                         <-----    --------->LBD16     <---------SPL7--------->RAP2.6(3)                                      ------  <---------LBD16      ------>ZmHOX2a(2)<---------RAP2.3(1)                                 <-------TEIL ------->TEIL         <------ZmHOX2a(2)<---------DEAR3(1)                           <---------YAB1 ---HVH21            --------->ARR14(2)<---------RAP2.3(2)   *TSS                 --------->YAB1 -RAP2.6(3)          <---------ARR14(2)<---------RAP2.3(3) ----------->GT1 <------------CBF--------->GLK1(2)   atgaaccggaaacgctgatttaagatcggacggtcacaaaggcggctgtgttaaagagagaatgttatttggaaacaaattgaattataagagattcaga  22884800                                                    --------->ARR14(2)                                                    --------->ARR11(3)                                                    <---------ARR11(3)                                                    <---------ARR14(2)                                                    <-----------GT1                                                   <---------GLK1(1)                                                   --------->GLK1(1)                         --------->YAB1            <---------CCA1(2)             ----------->GT1                 <-------TEIL            <--------ATHB1         --------->ARR14(2)              <-------TEIL                --------->ATHB12         <---------ARR14(2)              <---------------AtSPL8      <---------ICU4      --------------->AGL15              --------------->AtSPL8      --------->YAB1      <---------------AGL15              --------------->AtSPL3--------->ANAC58         ---------->DOF2     <-----------------AGL1         --------->YAB1--------->ARR14(2)<---------ATHB12   <---------AHL20(2)     <-----------------AGL2         --------->AHL20(2)         --------->ANAC58        --------->AHL20(2)   <-----------GT1    --------->YAB1<---------AHL20(2)  ------>ZmHOX2a(1)  <----------DOF2       ---- ----At4g35610     --------->YAB1--------->YAB1   ---------->TaMYB80--------->ICU4 --------->AHL20(2) --->At4g35610----------->GT1   <---------YAB1 ----------->GT1 --------->ANAC46    <---------AHL20(2)   agaatttactggataggggaaaaataatcatattctaataatatacgtacagtatatcctctctcactcaatgatttctttgtttttaattaaagggcca  22884900                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                 <---                                            <---------ANAC58                                     ----                                            <---------ANAC58                                   ------                                         <---------WOX13(1)                                    <-----                                       <---------ICU4                                          <-----                                       --------->ATHB12                                       <------                                     ------->MYC3                                             <------                                     <-------MYC3                     <-----------GT1       ---------                                 <---------ZAT18             --------->HSFB2a(2)     --------->GLK1(2)                <---------MYB59  --------->ZAT18             <---------HSFB2a(2)    <---------GLK1(2)         --------->CCA1(2)------->TEIL--------->ICU4      <---------YAB1            --------->ARR14(2) ------>ZmHOX2a(2)        <-------TEIL<---------YAB1   <---------AHL20(2)           <---------ARR14(2) ----->ICU4--------->ALFIN1      <---------ZAT14<----------DOF2 <---------ARR11(3)  <---------GLK1(1)   tgatccagtagagatgggcctaaatatgtacatggtgcacatgattgcttctttttttttattctagatgtttttctctctagtgggattctgtctatca  22885000   <---------ANAC58   <---------ANAC58   <---------ANAC46 ------>ATHB51 ------>ATHB12 -------ICU4 ------YAB1 ----->ICU4 --->YAB1                                           --------->ANAC58 ----ICU4             <---------AHL20(2)            --------->ANAC46 ---HAHB4             --------->AHL20(2)            --------->ANAC58 ---YAB1           <----------DOF2          <----------DOF2                        --------->At4g35610 ---ATHB12      <-----------GT1       <----------DOF2           <-----------GT1    <---------At4g35610 >WOX13(1)<----------DOF2          <---------ARR11(3)      --------->ICU4--------->HSFB2a(2)      <--   ttattgtgtgttctttttttacttttaattcaaacaatttcttttcctttgtacaagaaaaatgattttcaacttctaaaatgacagctaaattcaaaga  22885100                             --------->TOE2(3)            ----------->GT1                 --------->YAB1                             --------->TOE1(3)           <---------TOE2(3)               <-------TEIL --------->AtLEC2            <----------DOF2         ------->TEIL               --------->GLK1(2) -----TEIL        <----------DOF2        <----------DOF2 --------->MYB59     <---------TOE2(3)    <--   ttcatgaaaaacatgctcatctttctgtttactttaacaaaaactttaagagatgtatttaggtaaaattagacggtttaagaatatgaaattcataaga  22885200      <---------ANAC55(2)     ---------->DOF2      --------->ANAC55(2)   <-------TEIL     <---------ICU4  <---------ANAC58                                                   --------->ANAC58    --------->ICU4   <---------ANAC58                                                   --------->ANAC58  --------->YAB1     <---------ANAC46              --------->YAB1------->TEIL      --------->At4g35610 --------->ICU4 --------->ALFIN1                  <---------ATHB12                 <---------At4g35610 ----ZmHOX2a(1) <---------bZIP60(2)      ---------->DOF2----------->GT1<-----------GT1  --------->ANAC46   ggaataataagtaatgggatgtggcttgggttcaaagtcacttcaaagaccaatgataatgtaaatgaacattttactcttcttcatctcaagcaaactc  22885300  Previous    Next  AGI:  At3g61790.1    Description:  seven in absentia (SINA) family protein. Identical to E3 ubiquitin-protein ligase SINAT3 (SINAT3) [Arabidopsis Thaliana] (GB:Q84JL3;GB:Q8LFQ3;GB:Q9M359); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT4G27880.1); similar to unknown [Populus trichocarpa] (GB:ABK94950.1); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841); contains Inte Range:  from: 22882766    to: 22884761    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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