Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <---------CCA1(1)                           <---------At4g35610                           --------->At4g35610                <---------ALFIN1     <---------RVE1(1)                --------->AtMYB61   --------->ARR11(3)             --------->AtMYB61      <---------ARR11(3)             --------->DEAR3(1)     --------->ARR14(2)               <---------YAB1             <---------ALFIN1       --------->ARR14(3)             --------->YAB1            --------->MYB46(3)      <---------ARR14(3)             <-----------GT1          <---------ALFIN1--------->ANAC58                        --------->MYB46(3)         --------->At4g35610        <---------ARR14(2)       --------->LBD16        --------->ANAC46  --------->ANAC58      <---------YAB1--------->At5g28300     --------->YAB1    <-----------GT1    <-----------HVH21     <---------YAB1 <---------ANAC46     <---------YAB1 <---------ICU4--------->MYB46(3) ----------->ARR10        <---------LBD16 <---------YAB1   cagttattaccagcaccaccaccatggtcagcaacgaagatattctcgtgattatagagattgcggtaatcaccattctgaataccattgatgactctag  22825600                                      --------->WRKY18(1)                       <---------TOE1(2) <---------At4g35610                     ------->PIF5   <------MYB83<------MYB46(1)                 <---------ZAT2     <------MYB46(1)             <------ZmHOX2a(1)     <---------AtMYB61                         ------>MYB46(1)          --------->YAB1        <---------ZAT6  ----------->GT1              ------>MYB83   <--------         <---------ATHB12       <-----------RAV1(1)                        --------->DEAR3(1)       -       --------->WOX13(1)  --------->CCA1(2)    <------MYB83              --------->At4g35610<------ZmHOX2a(2)     <---------ATHB12<-------PIF5 <--------P <---------MYB52(1) <----------DOF2             ---------   gctccaaatcaatgaggagagctcgtgggatatagtgttggtcatccgcttggtaaaaaaacacatcttttctatcacctcccttcacaaacaagatcaa  22825700 -ARR11(3)                             <---------AHL20(2)                            --------->YAB1 -------->TOE2(3)        ----------------->AGL1                     --------->MYB52(1)    --------->TOE1(2) >ARR11(3)               <-----------------AGL1               --------->LBD16   <---------ATHB12   aacatcaaaaatccactaatccactaatcccaaatgggtattcaattgtcgattaatagaaacccagaaacaacgatttcgaatcaataagacctaagaa  22825800                                         --------->At4g35610                                         <---------At4g35610                                       <-----------RAV1(2)                                   <------MYB46(1)                                   <---------DEAR3(2)                                   <------MYB83                                   <---------MYB46(3)                            <---------ANAC46                            <---------ANAC58                            <---------ANAC58                   ---------->DOF2--------->MYB111(1)                --------->YAB1   <--------P                --------->AHL20(2)<---------AtMYB61               <---------YAB1   <-------GAMYB                                       <----------DOF2            --------->AHL20(2) <------MYB83  >>>>>>>>>TBF1                         <---------ICU4            <---------AHL20(2) --------->ATHB12                         <---------HSFB2a(2)    <-----            <---------AHL20(1) <------MYB46(1)                          --------->HSFB2a(2)    <-----            --------->AHL20(1) <---------MYB46(3)  <------ZmHOX2a(1)  ------>ZmHOX2a(1)        <-----   attcaagtagacaattaattataaagagaggcttggttggttcagaagaagaaggacctgagtagcgaagtcctcgagaataccatctttactgataccg  22825900                                   ------>ZmHOX2a(2)                                 --------->ARR14(2)                                 <---------ARR14(2)                     --------->ARR14(2)                     <---------ARR14(2)                                     --------->LBD16                   --------->LBD16<------ZmHOX2a(2)     --------->TOE1(3)<---------LBD16                  --------->HSFC1(1)                   ----------->RAV1(2) --------->LBD16       ---------->DOF2--------->GLK1(1)               ------>MYB83  <---------ICU4 ----ANAC46       <---------HSFB2a(2)                 -------->P   --------->ICU4 ----ANAC58       <---------HSFC1(1)                  ------>MYB46(1)--------->ARR11(3) ----ANAC58       --------->HSFB2a(2)      <---------ALFIN1   ----------->GT1                  ------   tgctcgaggcaaagctgtttccagaactccataccgatctgattcccacattgtccaacctgaagcgtaattatctcccgaggcatttctaaacccagaa  22826000                                                                                                <----                                                                                               <-----                                                                                        <------NtERF2                                                                                        <---------ANAC46                                                                                       <---------LBD16                                                                                       --------->LBD16                                                                        <---------AHL20(2)  ---------                                                                        --------->AHL20(2)  <--------        <---------ANAC58                                               --------->AHL20(2)  --------->ARR14(2)        <---------ANAC58                                               <---------AHL20(2)  <---------ARR14(2)        <---------ANAC46                                            -------->HAHB4     ------>NtERF2       <---------------AtSPL8                      --------->YAB1   ----------->GT1   <---------ANAC46    <------------CBF                              --------->ICU4    --------->ATHB12  <---------ANAC58   --------->ATHB12                      <---------At4g35610       --------->ICU4     <---------ANAC58  <---------YAB1    <---------TOE2(3) <------ZmHOX2a(1)            <---------YAB1  <-----------RAV1(1) ---->DOF2 <-------TEIL    --------->HSFB2a(2)<---------YAB1  --------->YAB1       ----------->HVH21   agttgttattgggtacaaaactagggtttcgagactgtgaggaagatgatgaatgatgaagaaatgaaaatgattaaattaagctctggcgcggatacct  22826100                                            ----------->GT1                                           ----------->GT1                                   ------>NtERF2                                               <-----                                  <---------SPL7                                          --------->ANAC58                                  ----------->HVH21                                     =============                                 <---------ANAC46                            ------->MYC3 --------->ANAC58 ------DOF2          ---------->DOF2--------->SPL7                  --------->ANAC46    ---------->DOF2 ----DAG2         <----------DOF2<---------ANAC58               <-----------GT1        <---------AHL20(2) >GLK1(1)  ------------>CBF      <---------ANAC58       <---------AtLEC2     <-------MYC3 --------->ANAC46 -GLK1(1) <------ZmHOX2a(2)     <---------LBD16--------->AHL20(2) --------->ZAT6       --------->AHL20(2)   ttttaaaactcgatccaatgctttaaagaatttttgcggacggagaagataaatttttgcatagattaacactaaaccatatgctctaattaaagccaca  22826200                              --------------->AGL15                              ============================MADS_MADS                 --------->MYB52(1)               --------->MYB46(3)               <---------MYB111(1)               ==============MYC_MYB                                                  ---------->DOF2               <------------MYB.PH3(2)                                            <---------------AGL15               <---------MYB46(2)        ------------>ATHB5                      --------->TOE2(3)               <---------MYB52(2)       ----------------->AGL3                   --------->TOE1(3)          --------->At4g35610<-----------------AGL1                            --------->ARR11(3)          <---------At4g35610<-----------------AGL2                            <---------ARR11(3)     --------->At4g35610<---------At4g35610 <---------ATHB12                <---------ATHB12     --------->ZAT2<---------TGA1a      ==========================================================MADS_MADS     <---------ZAT2--------->TGA1a<------------CBF     <---------MYB52(1)   --------->AHL20(2)     <---------At4g35610--------->At4g35610 <---------ATHB51            ------------>CBF ----ALFIN1  --------->MYB52(1)--------->YAB1--------->YAB1           --------->At4g35610 ============================bZIP_DOF   ------------>CBF              <---------At4g35610   ctctctcagctaagctaactaacgtctgcttactcatattgggccaattataggcccgttttgtatttcttcagcccaataaatcttaaaaaggaagaat  22826300                                                                                                  ---                                                                                                  ---                                                                                                <----             ----------->GT1            <---------AHL20(2)                               --------->TOE2(3)          <------ZmHOX2a(1)            <---------AHL20(2)                               <---------ICU4        <---------TOE2(3)          <---------TOE2(3)                                    --------->ATHB12      ---------->DOF2       <-----------GT1                                             --------->YAB1 <---------ANAC46       <----------DOF2--------->AHL20(2)            <----------ID1--------->AHL20(2) <---------AtLEC2 <---------ICU4   <---------YAB1                    ----------->GT1   <---------ATHB12 <---------ANAC58 --------->YAB1   <---------TOE1(3)                ----------->GT1<---------AHL20(2) <---------ANAC58--------->ICU4<----------DOF2          <---------YAB1           <xxxxxxxxxxxxxxxxxxx   tttgcatgtaaaggatggaataataacttttaactttaagattaatttttagagttttttgattatcaaatgggaaaaatgtcatttaaatcattagttt  22826400                                                         <-----------RAV1(1)  <---------YAB1                                                        <---------TOE2(3)   --------->YAB1                                                      <---------AHL20(2)    <---------ICU4         --------->MYB52(2)                     ------>ZmHOX2a(1)          --------->ICU4       <---------MYB52(1)                --------->AHL20(2)                <---------ATHB12      --------->TOE2(3)           ----------->GT1    <---------AHL20(2) --------->AHL20(2) -------------->AGL1             <---------AtMYB61   --------->AHL20(2) <---------AHL20(2)      <---- -------------->AG           <---------ANAC58  --------->TOE1(3)       --------->AHL20(2)      ------ -------GT1                  <---------ANAC58  --------->TOE2(3)       <---------AHL20(2)      ------ xxxxsmallRNA(si3)     ------->TEIL      <---------AHL20(2)      <-----------GT1         <xxxxxxxxxxx   accattttcgttagtttaaaatatgaattttgggtatggtgatttaaatccttaattttatgttgtttttcaatttaatcatgaattctcgttgagtaag  22826500  Previous    Next  AGI:  At3g61650.1    Description:  TUBG1 (GAMMA-TUBULIN); structural molecule. Identical to Tubulin gamma-1 chain (TUBG1) [Arabidopsis Thaliana] (GB:P38557); similar to ATGCP2/TUBG2 (GAMMA-TUBULIN), structural molecule [Arabidopsis thaliana] (TAIR:AT5G05620.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61748.1); similar to gamma tubulin [Nicotiana tabacum] (GB:CAC00547.1); similar to gamma-tubulin [Lupinus albus] (GB:AAN87551.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Tubulin; (InterPro:IPR000217); contains InterPro domain Gamma tubulin Range:  from: 22823576    to: 22825986    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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