Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->LBD16                                                          <---------ANAC55(2)                                                          --------->ANAC55(2)                                                          --------->ANAC58                                                          --------->ANAC58                                                         <---------LBD16                                                         <-------TEIL                                                        --------->CCA1(2)                                                        --------->ARR14(1)                                                       --------->ARR11(1)                                                       --------->ARR14(2)                                       --------------->AGL15                                  <------                                       <---------ANAC46<---------ARR14(2)                     <------                                       <---------------AGL15                                 --------        ---------->DOF2               <-----------------AGL3                    ---------------------  ----------->GT1                     ----------------->AGL2                  <---------ARR14(2) -------ARR14(2)                      ----------------->AGL3                  <---------GLK1(2)<----- ------>ARR14(2)                      <-----------------AGL2        --------->CCA1(2)    <-----------GT1 ---At4g35610                         ----------------->AGL1   ---------->DOF2--------->ARR14(2) -->At4g35610                   ---------->DOF2      ----------->ARR10        --------->ARR11(3)    -   gaactggaaacaaagttggaatttttgttcatataaaagtgccgaatatagaactgagatacggaaaaagataagagacagattttgagttttacccgtc  22813700                                                      --------->ANAC58                                                      --------->ANAC58 -----TGA1                            ----------->RAV1(2) -----HVH21               ----------->ARR10           --------->ANAC46 ->ANAC46             <---------At4g35610      <---------ICU4                                      -- -->TaNAC69(2)        <---------ZAT2  --------->At4g35610   --------->YAB1                    <------ ----MYB52(1)         --------->At4g35610     <-------TEIL <---------ATHB12                   <------ -------->TOE2(3)     --------->ZAT2  <---------At4g35610--------->WOX13(1)                   <------   agccttagaaacaactccaacttcagctacgatttgcctcatctgagattcattacaagcaatcacgaatagaccgattaacttgtgaaggcagtggctt  22813800                                                                        --------->ANAC55(2)                                                                        <---------ANAC55(2)                                                                        <---------ANAC58   --------->ZAT6                                                                        <---------ANAC58<---------ZAT18      --------->At5g28300                                              --------------->AtSPL3     ----------->GT1                                      --------->ARR14(3)            --------->ZAT18 -------->DOF2                                            --------->ARR11(3)            --------->ZAT14 ---ANAC58             --------->YAB1                     <---------ARR14(3)--------->ANAC58 ---ANAC46        <-------TEIL            ------>NtERF2   <---------ARR11(3)--------->ANAC58 ---ANAC58       --------->AtLEC2        --------->DEAR3(1)            --------------->AtSPL8   acaaagacagtgaatagagatgcaaacatacctcgttgaatcggcgaccatctaatcgaagaccttcagggtttacgtactccattgttgtgaactctag  22813900                                                               ----------->RAV1(1)     ------->TEIL                                                             ------>ZmHOX2a(2)     <-----------------            --------->YAB1                           <----------DOF2    --------->ANAC46          <---------TOE2(3)                        <---------ICU4       --------->ANAC58         ----   --------->ARR11(3)    ---------->DOF2          <-----------GT1--------->ANAC46 --------->CCA1(2) <---------ZAT6        <---------ATHB12  <XXXXXXXXXXXXXXXXXXXXMIR417    --------->ANAC58  <----------   gtagagataatcaaggatgagagcaatgaaagacagaaacagaacaagtttaatactttctgatcccacagaacagggaacaagagacgaatttacctct  22814000                        <---------ANAC46                       <---------LBD16                      --------->MYB52(1)               --------->RAP2.3(1)               <---------------------WRI1               <------NtERF2              <---------ERF1              <---------DEAR4(2)              ------>NtERF2              <---------RAP2.3(1)              <---------ORA47(2)              <---------ATERF1(1)             <---------DEAR3(1)             --------->DEAR3(1)             <---------RAP2.3(2)             <---------ANAC46             <---------RAP2.3(3)             <---------ATERF1(2)             --------->ATERF1(2)            <---------ABI4(1)            <------NtERF2                  <------NtERF2            --------->RAP2.3(1)           ------>NtERF2            --------->ATERF1(1)          --------->DEAR3(1)           <---------ATERF1(1)           <---------ANAC46           <---------RAP2.3(1)           <---------DEAR3(1)           <---------RRTF1(1)           --------->ATERF1(1)          <---------DEAR3(1)            <------NtERF2          <---------RAP2.3(2)          <---------ATERF1(1)          <---------RRTF1(3)           <---------RAP2.3(1)                 --------->ICU4         <---------At4g35610       <---------SPL7                   ----------->RAV1(1)         --------->At4g35610<---------DEAR3(1)                  --------->ETT(2)      *TSS      <---- ------TaNAC69(2)  --------->CCA1(2) <---------ORA47(1)---------->DOF2   ---------->DOF2        <---- -->NtERF2<---------RAP2.6(2)  <---------DEAR3(1)<---------ZAT14<---------ETT(2)     <---------DAG2 -GT1<----------DOF2 ----------->HVH21<---------DEAR3(1)     --------->ALFIN1        <----------DOF2   gccagtactttagcggcggcgatatgacggagggcgatggacggcgtcgagagaactgaaagagtgtcgacaacataaagattagggctttttggttcct  22814100                                                         --------->YAB1                                                       <-----------TBP                                                   <---------AHL20(2)                                                <---------ARR14(2)                                <-----------HVH21<---------RVE1(1)                       ----------->GT1          --------->ARR14(2)                       ----------->GT1                     <---------TOE1(3)          <---------ARR11(3)                    <------------CBF                     <---------TOE2(3)          --------->ARR11(3)               --------->ANAC58         <---------ANAC55(2)   ----------->GT1 <------ZmHOX2a(1)                 --------->ANAC58 <-- ------DOF2    <---------ARR11(3)           <------ZmHOX2a(1)                    --------->AtLEC2XXXX -----DAG2     --------->ARR11(3)        <-----------RAV1(2)                   <-----------RAV1(2)<--   ttttgtgaattaagtgagattttaagggtaaaaccgtcaaatcacaggaggatttttttttataacttctagtttatgaagccaggcaaattggtaattc  22814200                                       --------->ANAC58                                       --------->AtLEC2                                       --------->ANAC58                                   --------->AtLEC2              ------>ZmHOX2a(2)             ---------->DOF2    <---------KAN4(2)               <------ZmHOX2a(2)          ----------->GT1   --------->LBD16                    --------->ARR11(3)         --------->DAG2    <---------ANAC58                    <---------ARR11(3)        ---------->DOF2    <---------ANAC46                   --------->At4g35610   ---------->DOF2         <---------LBD16                    <---------At4g35610 -------ANAC58             <---------ANAC58                   --------->GLK1(1) XXXXXXXXXXXXXXXXX>MIR173 <---------LBD16                     <---------GLK1(1) -------ANAC58        <---------ICU4<-------TEIL       <---------YAB1   ---------->DOF2   gcttgcaaagaaaagtaaagctcaaaattgcgggaacatgcatgcaataagagaattaagagtgagatcccttcaaaagtatagctcaaattgttgttgt  22814300                      --------->WRKY38(1)                                                        ----                 <---------ANAC58                                --------->ARR11(3)             <----             <----------DOF2  <---------MYB52(1)      --------->YAB1    <------ZmHOX2a(2)   --------- <----------DOF2 <---------ANAC58                     ----------->GT1  <---------ARR11(3)   <--------   tttcttttatcaaggcttttcttgttgactctgttatttcaagtatgtattagtaatagtaatatagtatctagatcaatttctaagtcaatagtatatt  22814400                           --------->ALFIN1                         <---------ANAC46                         <---------ANAC55(2)                         <---------O2                         <---------ANAC58                         <---------ANAC55(1)                         --------->TGA1a                         <---------TGA1a                         --------->O2                  <------NtERF2                                                      <---------ANAC46                <---------LBD16                                                    --------->MYB52(1)                --------->ETT(1)                                                  ----------->TGA1                <---------ANAC46       ------>NtERF2                              ------>ZmHOX2a(1)              --------->REM1(2)        <---------RAP2.6(3) <---------ANAC46       ----------->HVH21              <-----------HVH21       <---------ETT(1)    --------->MYB59     --------->ARR14(2) ----->YAB1  --------->ALFIN1         <----------ID1---------->DOF2           <---------ARR14(2) -----YAB1  ------->MYC3 <---------ANAC58       ------->TEIL              <---------ANAC46 >ARR11(3)  <-------MYC3 ======================================bZIP_DOF --------->MYB52(1)    ------- -AHL20(1) --------->O2  --------->ANAC55(2) <---------ATHB12          ----------->HVH21  <------ZmHOX2a(1)   gatagtagtatcaacgtgtcgggagttacgtgtggcaatgccgacaaatgaatgcaaagtgaggtatatgaaaatgacgggttcctgacggaggagatga  22814500                  --------->At4g35610            <---------TOE1(3)   --------->AHL20(2)   <---------ARR11(3)   <---------AHL20(2)   --------->ARR11(3)                 --------->DAG2   --------->ATHB51   ----------->ARR10        --------->ATHB12   --------->ANAC46  --------->ICU4  <---------At4g35610    ------->TEIL <------ZmHOX2a(2) -->ICU4    <---------TOE2(3) <----------DOF2------->TEIL ---------->DOF2            --------->AHL20(2)   tggaattatttactaaggtttgctaacatcttctttttttatgtatgtatgtttggatcaaaaagtatacaaaaccatattagacaatttaagagagacc  22814600  Previous    Next  AGI:  At3g61620.1    Description:  RRP41 (Ribosomal RNA Processing 41); 3'-5'-exoribonuclease/ RNA binding. similar to 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] (TAIR:AT4G27490.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96716.1); contains InterPro domain Exoribonuclease, phosphorolytic domain 1; (InterPro:IPR001247); contains InterPro domain Exoribonuclease, phosphorolytic domain 2; (InterPro:IPR015847) Range:  from: 22812196    to: 22814086    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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