Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       --------->WRKY38(1)                                                                     --------->WRKY12                                                                    --------->DOF5.7(2)                                                                   --------->TOE1(3)                                                                  <---------ANAC46                                                                <---------DOF5.7(2)                                                              --------->DOF5.7(2)                                                     ------>ZmHOX2a(1)                                     --------->AHL20(2)   --------->MYB52(1)                   ------   ---------->DOF2                   <---------AHL20(2)  --------->RVE1(1)                     ------ ->TEIL    <----------ID1       <---------TOE2(3)   --------->TOE2(3)--------->WRKY45          ------   gtctctaaagatgggaacaaattagttggaatttgagatttaaacaaaaatgttcctaaatatcggtaacgttgactaaaaaaacatatgtttttctaag  22788400                                                                                                  ---                                                                                                  ---                                                                                             --------  <---------AHL20(2)                                                                        <--------  --------->AHL20(2)             ---------->DOF2                                      --------->ANAC58 --------->YAB1            ----------->GT1     ---------->DOF2         <----------DOF2--------->ANAC58 --->ANAC58               ------------------------>ANAC81        ---------->DOF2   ----------->TGA1 --->ANAC46          ---------->DOF2       ---------->DOF2 ------->GAMYB           ----------->HVH21 --->ANAC58       <-----------HVH21    ---------->DOF2 ----------->HVH21       <---------ATHB12 <----   caattttaatgtgtttgaaatgtcaaagaatgtaaaaaagagaaagaaagaaagtctctaaccgagataaagactttgccactcactgacgaaatgtccc  22788500                                                                                                  ---                                                                                                  <--                                                                                                 ----                                                                                                <----                                                                                                -----                                                                                             --------                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                             -------- <---------O2                                                                                -------- <---------bZIP60(1)                                                                        <-------- --------->O2                                                                             --------->ARR14(2) --------->bZIP60(1)  ---------->ID1               <---------YAB1                      <---------ANAC46 ------>ANAC46      --------->MYB52(2)             <---------AHL20(2) --------->WRKY12 --------->ANAC58 -------->HVH21   <---------MYB52(1)         <---------MYB52(1)   --------->DEAR3(2)   <---------ANAC55(2) ->PCF2     <---------ETT(2)               <---------MYB46(3)     --------->MYB46(3)   --------->O2 ---HVH21   --------->ETT(2)             <---------At4g35610     ------->TEIL          --------->ANAC58 -----ALFIN1--------->MYB46(3)         --------->ZAT18<---------YAB1  --------->WRKY38(1) <---------ARR14(2)   acgacgtcgttctatcgaccgtttgtttttttttaaacgagtgagccgttgatattattcttatatgaaccgatgactgccagtctgccacgtatacgga  22788600                                                                                                 ----                                                                                                -----                                                                                          <---------ANAC58      <---------YAB1                                                                      <---------ANAC58   ------>ZmHOX2a(1)                                                                     <---------ATERF1(1)   <---------SPL7                                                                     <-------GAMYB ------>HSFB2a(1)                                                                     =============== -------HSFB2a(1)                                                                     <---------ANAC58 ----->ARR14(2)     <---------DAG2                                                   <---------MYB46(3) -----GLK1(2)       <----------DOF2                                                 <---------TOE1(2) ---->ARR14(2)  <---------MYB52(1)                           --------->ZAT18      ------------------- ->ANAC55(1)   <-------GAMYB                            <---------ALFIN1         ------>ZmHOX2a(2) ->ANAC58     <---------DEAR3(2)                       --------->ZAT2           <------ZmHOX2a(2)<--- --ANAC55(2)  <---------MYB46(3)                    <---------ZAT14            <---------ARR14(2)<--- ->ANAC46    --------->ETT(1)                       --------->ZAT18            --------->ARR14(2)---- ->ANAC58  ------------>AtMYB77         <------ZmHOX2a(1)  --------->PCF2<---------MYB46(3)   <------ ->ANAC55(2) <---------DREB2C(2)  ---------->DOF2   <---------ZAT18      <-----------RAV1(1)------>NtERF2 -LBD16  <----------DOF2    ----------->GT1       <---------ZAT18      <----------DOF2<---------ANAC58   atctccttacgcttgtcggttactttatgtaagtaaaaaagaggagttacagagcgcaccaggcccactaggcctttgttggatccttggttgcctccac  22788700                   <---------SPL7                  <---------ANAC58                  <---------ANAC58       --------->ANAC58     <-----------GT1       --------->ANAC58    --------->KAN4(2)  --------->ANAC46--------->TGA1a  --------->LBD16 ============================bZIP_DOF                              --------->GLK1(2) <-----------RAV1(2)    <---------MYB52(1)                              <---------ARR14(2) <---------HSFB2a(2) <-------TEIL                                      <---------SPL7 --->MYC3         ============================bZIP_DOF                <---------MYB46(3) ---->ANAC46      --------->bZIP60(1)                         ------->TEIL          ------->TEIL ===========================MYC_MYB                        --------->ANAC55(2)   <---------ANAC55(2) -->WRI1          <---------TGA1a                         <---------TOE1(3)      --------->ANAC58 ----MYC3        --------------->AtSPL3                   <---------TOE2(3)      --------->ANAC58  -- ----MYC2       <---------DOF5.7(2)             --------->MYB52(1) <-----------RAV1(1)  ---------->DOF2 --->MYC2      --------->WRKY12          ---------->DOF2 <---------DOF5.7(2)     --------->ANAC55(2) ---ALFIN1    --------->DOF5.7(2)  <----------DOF2     --------->DOF5.7(2)   <-----------HVH21<------   gttccaggcactaaacgttgacgtccgtttattccttctttaaaaaagactaacgtcgttaacgtatttctgtggttcgggtcacgaatctaaaggctcg  22788800                                                                                               <-----                                                                                             <-------                                                                                             <-------                                                                                             <-------                               --------->MYB52(2)                                   --------->ANAC46                               <---------MYB46(3)               ------>ZmHOX2a(2)   <----------ID1    *TSS                     <---------MYB52(1)             <---------MYB46(3)    <---------DOF5.7(2) ------->YAB1  <-----------GT1--------->SPL7            <---------O2        ---------->DOF2 <-------- -TEIL   <---------MYB59<-----------GT1             <----------DOF2    <----------ID1<<<<<<<<<<<<<<<<   ttcataagttgcctaataaacctatttctccgttcgttctctccctctctctcgcttcacgttggatcgaaatcggacaaaagtaaacgacaatggcgga  22788900                                                        --------->CCA1(2)                                                        <------ZmHOX2a(2)                                                       <---------ARR14(2)                                                       --------->ARR14(2)                                                       <---------ARR11(3)                                                       --------->AGP1                                                       --------->ARR11(3) -NtERF2                   --------->GLK1(2)  <---------At4g35610              <------NtERF2    ----- --ANAC46           --------->ANAC46         ------>ZmHOX2a(2)    --------->ANAC58         --------->LBD16 --ANAC58           --------->ANAC58        <------ZmHOX2a(2)     --------->ANAC46        <---------ANAC58 --ANAC58           --------->ANAC58       --------->ARR11(3)     --------->ANAC58        <---------ANAC58 -LBD16       --------->AtLEC2  ----------->HVH21    ----------->ARR10       <---------DEAR3(1) ----- <LFY   --------->GLK1(1) <---------GLK1(2)<---------ARR11(3)  <------ZmHOX2a(2)  <---------At4g35610   agaattggagaaatctatgcacaaggaagaatctctgatggagaagatcgctgataagatccacgatcacgactcttcgtcgtcgtctgattccgagcac  22789000                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                             ------->TEIL                                                                                             <-------TEIL                                                                                           <---------SPL7                                                                                           --------->TOE2(2)                                                                                          --------->ANAC55(2)                                                                                          <---------ANAC58                                                                                          <---------ANAC55(2)                                                                                          <---------ANAC58                                                <------MYB83                          <---------ANAC58                                                <------MYB46(1)                       <---------ANAC46                                                <---------ANAC46                      <---------ANAC58                                               --------->MYB59                     <---------RAP2.6(2)                                               --------->MYB46(2)                --------->MYB55(2)                    <----------DOF2            --------->MYB111(1)               <---------MYB46(3)                  --------->At4g35610          --------->MYB111(2)               --------->ABI4(2)                  --------->ZAT2               <---------MYB46(3)               <---------AtMYB61                  <---------ZAT2           <---------MYB46(3)                   <---------DEAR3(1)                  <---------At4g35610      --------->MYB52(2)                   --------->ALFIN1               <---------MYB52(1)         <---------TOE1(2)                 <---------HSFB2a(2)              <-----------TGA1           <---------MYB52(1)             <---------GLK1(2) <---------ANAC46       <---------GLK1(2)          --------->CCA1(2)                   --------->DAG2 <------NtERF2 ---->ANAC58  <-----------HVH21  --------->ARR11(3)                   <---------TOE1(3)  ------------ ---->ANAC58 --------->ANAC46    <---------ARR11(3)                   <---------TOE2(3)<---------SPL7   gagaaaccagagtctccgtcagctttgaaggccaagatatatcgtttgtttggtagagagaagcctgttcataaggttctcggtggtggcttacgtacgt  22789100                                    ------>ZmHOX2a(2)              <-------GAMYB                                    ========================HOX2a_HOX2a                                   <---------At4g35610        <---------YAB1                      <---------MYB46(3)                --------->ICU4      <---------ICU4 ->SPL7<---------CCA1(2)          <---------ARR11(3) <------ZmHOX2a(1)  <---------YAB1 --TOE2(2)          <---------MYB52(1)  <----------DOF2<---------WOX13(1)--------->YAB1 --TOE1(2)     <-----------GT1<---------ANAC58      <---------YAB1--------->MYB52(2) --->AtSPL3<----------DOF2    <---------ANAC58 --------->CCA1(2)  <---------MYB46(3)   tttcttctcatctcttttaatcgtttgtcgatgcttgatctgctatatgatatgaggattgattatgtttgttgataataagtgttttgctatgttttca  22789200                                         ----------->HVH21                                    <---------At4g35610                                    --------->At4g35610                        <---------DAG2 --------->At4g35610                  <---------GLK1(2)                        <----------DOF2<---------At4g35610                 --------->At4g35610                  <-----------RAV1(1)<---------DEAR3(1)    <----------ID1  <---------ZAT2<---------REM1(1)            ---------->ID1  <---------YAB1  <---------ANAC46               <---------At4g35610   aaccatttggatttgtcttactgttgccttatgtttgcagcggctgatgtgttcttgtggagggacaaaaaactctcagcttctgttcttggtgtagcga  22789300  Previous    Next  AGI:  At3g61560.1    Description:  reticulon family protein (RTNLB6). similar to reticulon family protein (RTNLB5) [Arabidopsis thaliana] (TAIR:AT2G46170.1); similar to unknown [Populus trichocarpa] (GB:ABK92738.1); similar to unknown [Populus trichocarpa] (GB:ABK94480.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 22788804    to: 22791166    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version