Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <---------AHL20(2)                                    --------->AHL20(2)                                   <---------YAB1                                 <---------ICU4                                 -------->HAHB4                                 <--------HAHB4                                 --------->YAB1                                 <---------AHL20(2)                                 -------->ATHB1                                 --------->ATHB51                                <---------YAB1                                --------->ICU4                                 --------->YAB1       -                                <---------ATHB51                               <---------ICU4       <                              --------->YAB1                                  --------->ICU4       <-                              <---------ICU4                                  <---------YAB1    -----                             --------->AHL20(2)                             <--------HAHB4      <----           ---------->DOF2   <---------AHL20(2)                             --------->YAB1      -----      <----------ID1        <---------YAB1                                 <---------YAB1      <-----   ---------->DOF2        <--------HAHB4                         ----------->GT1  <-----------GT1  -- ------->AHL20(2)        <---------YAB1       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------YAB1------   attaaaaaagaacaaaagtttagttgtattattaattattaaaaatttagacgaaggtatactagttttgtaattctattattattactctatagaatta  22760600                                                                          <---------WOX13(1)                                                                         <------------CBF                                                                        -------->ATHB1                                                                        <---------ICU4                                                                        <--------ATHB1                                                                        --------->ATHB12                                                                        --------->ATHB51 -------->AHL20(2)                                                      --------->YAB1 ---------AHL20(2)                                                     <---------ATHB12 --------AHL20(2)                                                      --------->ICU4 ---->AHL20(1)                                                         <---------ATHB51 -----AHL20(2)                                                     ------------>CBF ---->AHL20(2)                                                --------->YAB1               ---------- ----AHL20(2)                                               <---------TOE2(3)      --------->LBD16 ------->AHL20(2)                 --------->CCA1(2)       --------->TOE1(2)       --------->LBD16 --->AHL20(2)            <---------ZAT14                 --------->MYB46(3)      <---------LBD16    -   aattaatagtctatagaatggtttgagtaaaccgagaaatgagagagagttctccttgaaccaaggataatcaataattgattcccggtttattcgtaaa  22760700             --------->ANAC46--------->ANAC46     <---------ANAC55(2)--------->AHL20(1)            ---------->DOF2     <---------ANAC58  --------->YAB1               --------->TOE2(3)     <---------ANAC58  --------->AHL20(2)<---------ARR14(2)                 --------->YAB1     --------->ANAC55(2)<---------AHL20(1)       ----------->RAV1(1)   ------------>CBF    <-----------------------TaNAC69(2)   --------->ARR14(2)         --------->GLK1(1)    <-------TEIL      <---------ATHB12<---------AHL20(2)     --------->ALFIN1  <---------GLK1(2) --------->WOX13(1)--------->AHL20(2)    <---------MYB52(1)             <--------- ->GT1 <---------CCA1(2)<---------AHL20(2)     <------ZmHOX2a(2) ------------>CBF       <---------MYB52(1) ---------->ARR10 ------------>CBF   --------->AHL20(2)     <-----------HVH21         <---------ANAC46   attagattcgtatcaccgaaaccaattatattcgcaaaattaaaatccgatcaacataaaccggtcgggcaattccaattttgatgctccgtttattgag  22760800                                                                          ------>ZmHOX2a(2)                                                                        --------->ARR11(3)                                                                        <---------ARR11(3)                                                                       --------->YAB1                                                                     <---------TOE1(2)                                                                    =============HOX2a_HOX2a                       <-------TEIL                                 ------>ZmHOX2a(1)                      ============================HOX2a_HOX2a <---------HSFC1(2)                      <------ZmHOX2a(2)                       <---------KAN4(1)                     --------->ARR14(2)                       --------->KAN4(1)                     --------->AGP1                           --------->HSFC1(2)                     <---------ARR14(2)                       --------->HSFB2a(1)                     --------->ARR11(3)                       <---------HSFB2a(1)                     <---------ARR11(3)                   <---------MYB52(2)                        -           ----------->HVH21                              --------->MYB46(3)               <---------ARR14(2)        ------>ZmHOX2a(2)          <<<<<<<<<TBF1  <<<<<<<<<TBF1--------->KAN4(2)           --------->GLK1(2)  <------------CBF  --------->GLK1(1)      ------>ZmHOX2a(1) <---------KAN4(2)             --------->ARR14(2) ---CBF<---------At4g35610      <<<<<<<<<TBF1  <<<<<<<<<TBF1 ------->TEIL<---------GLK1(1)<---------GLK1(2)   cgtttattgatctgcgactgcgagatccatcttcttcttcttctccttcttcttcttccaacgaatgttcctatgatctctgtgtatgaacagaatctgt  22760900                                                                         <-----------RAV1(2)                                                                         <------NtERF2                                                                        <---------At4g35610                                                                        <------NtERF2                                                                      <---------RAP2.6(2)                                                                      --------->ATERF1(1)                                                                     --------->ATERF1(1)                                                                     <------NtERF2                                                                    <---------ATERF1(1)                                                                    <---------DEAR3(1)                                                               <---------ANAC58                                                               <---------ANAC58       <------------CBF                                        <---------ANAC55(1)     <-------TEIL                                              <---------ANAC46  ------>ZmHOX2a(2)    <------ZmHOX2a(2)                                         <---------LBD16----------->HVH21   --------->ARR14(2)                                        --------->MYB52(1) --------->PCF5   <---------ARR14(2)                                      <---------ANAC58<---------ZAT2   --------->AGP1                                          <---------ANAC58--------->At4g35610  --------->At4g35610                   <--------P   ------->TEIL  --------->ALFIN1        ---------- -------->YAB1               ------------>CBF---------->DOF2<---------SPL7 <---------At4g35610    ---   aatcagatccattgtagagagagatagccatttcaattcgaggtagccaaagatgtatatggcttacgggtggccgcaggtgatcccgcttctacctgga  22761000                               ------>NtERF2                              --------->ATERF1(2)                              <---------DEAR3(1)                              <---------ATERF1(2)                              --------->RAP2.6(2)                             --------->RAP2.6(3)                            --------->ATERF1(1)                            <------NtERF2                            <---------ATERF1(1)                           <---------SPL7                           <---------ATERF1(1)                           ------>NtERF2                                                        <----                          --------->DEAR3(1)                                            <----------DOF2                          <---------DEAR3(1)                <---------LBD16             <---------DAG2                    <---------At4g35610                    --------->At4g35610        <-------TEIL             ------->TEIL <---------ATERF1(2)              ----------->RAV1(2)     --------->At4g35610        <---------ANAC58  --------->ATERF1(2)              <---------ZAT2          <---------ZAT2 ---        <---------ANAC46 --------->ATERF1(1)               --------->ZAT2          <---------At4g35610        <---------ANAC58<---------ATERF1(1)             ----------->HVH21        <-----------RAV1(2)  <------NtERF2--------->TOE1(3)    <---------YAB1   <-----------HVH21    <---------ARR14(2) -------- ->RAV1(2)  <---------CCA1(2)--------->SPL7 <---------MYB46(3)            --------->ARR14(2)<-------- --->ZmHOX2a(2)--------->TOE2(3)<------NtERF2    <-----------GT1   <----------DOF2<---------TOE1(2)   tcgcagcgagtcgtgtaccttaagctcgccggccggctattactggtcgtttctccgtctcacctggagctttggggttcttctcaggtgctttatcatc  22761100                                                                    --------->LBD16                                   <-------GAMYB                   --------->ANAC46                --------->ICU4    <---------MYB46(3)               <---------------AGL15     --------           <---------ANAC46       ----------->GT1                  --------->ANAC58       <------MYB83 -----ICU4 <---------ANAC58       <------MYB46(1)                  --------->ANAC58       <------MYB46(1) ------>At4g35610--------->ATHB12 <------MYB83                     --------->LBD16      <--------P ->YAB1    <---------ANAC58     <--------P        <----------DOF2  --------------->AGL15--------->ALFIN1 -YAB1 <----------DOF2        <---------ZAT6      <---------DAG2  <---------LBD16    <---------TOE2(3)   atctctctgcatttcgtagtaattggagtctagagttggttaacttatatagctttttgtttgattttcccgcaattagcaacgagtgaggttgggaaag  22761200                      --------->HSFB2a(2)         --------->REM1(2)                      <---------HSFB2a(2)        --------->ALFIN1                     <---------ANAC58        <---------ZAT2                     <---------ANAC46        --------->ZAT2                     <---------ANAC58        --------->At4g35610                <---------MYB46(3)           <---------At4g35610      --------->At4g35610            --------->GLK1(2)                   <---------WOX13(1)      --------->CCA1(2)              <---------ARR14(2)                 <---------ANAC58      <---------At4g35610            --------->ARR14(2)                 <---------ANAC58 <---------ARR11(3) -->DOF2----------->HVH21      <------ZmHOX2a(1) <---------ANAC46      --------->ATHB12  --------->ARR11(3)   tatatgagagatgacaagtcgttgcgagaagaaggagagaatttgcaagctgtgtggagtccagactccaaattgattgctgttcttgtaagttcttagt  22761300                                                                                                   --                                                                  --------->ATHB12                 --                                                                  <---------AHL20(2)               <-                                                        <---------ZAT2    ----------->GT1          <-                                                        --------->ZAT2<---------AHL20(2)           <-                                                        ----------->RAV1(2)                  --------                                                        --------->At4g35610                 <--------                                                        <---------At4g35610           <---------ARR14(3)                                                <----------DOF2  --------->AHL20(2)   --------->ARR11(3)                                               <---------ICU4    --------->AHL20(1)   --------->GLK1(2)                                               --------->YAB1    <---------AHL20(1)   <---------ARR11(3)          <----------DOF2                     <---------ATHB12   <---------AHL20(2)   --------->ARR14(3)    <----------DOF2    <---------At4g35610  --------->WOX13(1) --------->GLK1(2)<-----------GT1   <--   ctcactcttttcctttgctaatttctgctaattgtttagtcactatcaatctttatccagctgagaatttattgaattgtttatacaaaatcttgttatt  22761400                                                                  <---------YAB1                                                               <---------MYB46(3) ===================================HOX2a_HOX2a               <--------P ------>ZmHOX2a(2)                                            <---------WOX13(1) ------->ARR11(3)                                           <------MYB46(1) ------->ARR14(2)                                           <------MYB83 ----------ARR10                                            <---------MYB46(3) --------ARR14(2)            <------ZmHOX2a(1)            <---------WOX13(1) --------ARR11(3)           --------->ICU4              --------->ATHB12 ->ATHB12            <---------ANAC46                  <---------YAB1 -YAB1    <---------GLK1(2)<---------TOE2(3)      <---------TOE1(3)<---------ICU4 ---------->DOF2 -------CCA1(2)  <----------DOF2 ----------->GT1  <---------TOE2(3)--------->ATHB12   ggatcttctccagattgttctttatgtgtaaggatgagaaaaaacatgtttttaggtttgattggttgatgatttcagacattctaaagcctctaatttc  22761500  Previous    Next  AGI:  At3g61480.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28350.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39674.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81454.1); similar to WD40-like [Medicago truncatula] (GB:ABD28704.1); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain Protein of unknown function DUF1339 (InterPro:IPR009771); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044) Range:  from: 22760959    to: 22767559    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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