Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               <---------ANAC58                                                             <---------ANAC58                                                      <---------ICU4                ------>ZmHOX2a(2)                                                      --------->YAB1                =================             --------->YAB1                           <--------HAHB4               <------ZmHOX2a(2)             --------->AHL20(2)                    <-----------GT1                 ==================             <---------AHL20(2)                   <---------AHL20(2)              <---------AGP1          --------->YAB1                          --------->AHL20(2)              <---------ARR11(3)         <---------YAB1                          --------->AHL20(2)               --------->ARR11(3) -------->YAB1         ------>ZmHOX2a(2)      <---------RVE1(1)                  <---------CCA1(2) -------->ATHB12   <---------YAB1             <---------CCA1(1)       --------->ZAT14             === ---------ICU4  <---------AHL20(1)           --------->ARR11(3)       --------->ARR14(2)          <-- ------->ATHB1  --------->AHL20(1)           <---------ARR11(3)       <---------ARR14(2)        ----- --------ATHB12 <---------AHL20(2)     <---------YAB1<---------ATHB12 <---------ZAT14   ---------->ID1   aatcattcgctataataatatatgatcgattaacaacgatgtttatagatatttaatcattttgctagtgagtatacagtcttagatctcgtcgtcttgt  22756200                --------------->AtSPL8           ----------->HVH21          <-----------HVH21         --------->bZIP60(2)         --------->ANAC55(1)         --------->ANAC55(2)         =====================================bZIP_DOF         --------->ANAC58         <---------O2         <---------TGA1a         --------->TGA1a                           --------->ANAC46         --------->ANAC46                          --------->ANAC58         --------->ANAC58                        <---------ALFIN1         --------->O2                            --------->ZAT6       <---------ALFIN1                     <------MYB46(1)      <---------REM1(2)                     <------MYB83     ------>ZmHOX2a(1)<---------ALFIN1   <---------ANAC46 ===========HOX2a_HOX2a                  <---------ANAC58 ===========HOX2a_HOX2a --------->bZIP60(2)--------------->AtSPL8--------->YAB1               <------ ==================bZIP_DOF              <---------ANAC58       <---------YAB1                ------- --------DOF2 <---------O2               <---------AtLEC2    <---------YAB1     ----------->GT1<----- ----->ID1<-----------TGA1         <----------DOF2 --------->ANAC58          --------->CCA1(2)<------   ctttctcctacacgtcacatggtaccacttcatgtttctttttgcttggtaccactccatgtttttattatcaaattggatatagaaaaattgcaattaa  22756300         <-------TEIL      ----------->GT1     <---------------AtSPL3     <---------------AtSPL8   ------>NtERF2     --------------->AtSPL8   --------->LBD16 --------->HSFB2a(2)         <---------ETT(1)                                          --------->AHL20(2) <---------HSFB2a(2)        <---------LBD16                                   --------->ZAT2 ---AHL20(2)               <---------ATERF1(1)                                <---------ZAT2--------- -->AHL20(2)          <-----------------AGL1  --------->LBD16                 ----------->RAV1(2) ----AHL20(2)        --------->PCF2     ---------->DOF2                       <---------At4g35610 ---AHL20(1)         --------->PCF5  --------->TOE2(3) <---------AHL20(2)     --------->At4g35610   tttgtagaaggtacataaatgaggtcccgctccggcaaatgttaaagccgtagttattttcttgaaggcctaatgctatcagctgaagattaaaaaaagc  22756400                                                                   <----------DOF2                       <----------DOF2 <---------ANAC46        <----------DOF2               <---------AtMYB61       <---------O2         <-----------GT1  ----------->GT1 ->DOF2      <----------DOF2       <-----------HVH21        <---------AHL20(2)   ccaaaaacatatgggctttggtattctttataagcccagtcacttggaatactagcttatattttctttctttaaaactcagttaatagttatgttcaaa  22756500                                               --------->At4g35610                                            <---------ATHB12                                     <-------PIF4                                     <-------MYC4   ------------>CBF                                     ------->MYC4 >>>>>>>>>>WRKY6                                     ------->PIF5 <---------WRKY18(1)                                     <-------PIF5 >>>>>>>>>>WRKY26                                     ------->MYC3 >>>>>>>>>>WRKY38                                     <-------MYC3 >>>>>>>>>>WRKY11                                     ------->PIF4 >>>>>>>>>>WRKY43                                     <-------MYC2--------->WRKY45                                     ------->MYC2----------->HVH21                                    --------->ANAC55(2)                                    --------->bZIP60(2)                                    <---------TGA1a<-----------------AG                      <---------SPL7--------->TGA1a<-----------------AGL1<---------MYB52(1)                      ----------->HVH21 ------------>CBF     --------->ARR14(2)                    --------->ALFIN1<---------PIF3(3)        <---------ARR14(2)                  <---------ANAC46  <---------ANAC55(2)     <------ZmHOX2a(1)      ----------->GT1                 --------->ALFIN1   <---------O2 --------->WRKY12      <---------ANAC58              --------->ARR11(3)    --------->O2 --------->WRKY38(1)  <---------ZAT18       --------->GLK1(2)            --------->PIF3(3)     <---------TOE2(3)    --------->LBD16    ---       --------->ARR11(3)           ============================================MYC_MYB          ----       <---------ARR11(3)       <----------------PIF3(2) --------->YAB1<---------ANAC58       -------  ----------->GT1<---------AtMYB61<------------OsbHLH66 <---------ATHB12<-------GAMYB<---------KAN4(2)   tagagagaaaatctaagatgtggtgggacgaagttgccacgtgccaatgagttgaccaatgaggaaactcagtgcgttatccgtagggataatcagataa  22756600                                                    <---------MYB52(1)                                                  --------->MYB52(2)                                                 <-------TEIL                                               ------->MYC3                                               <-------MYC3                                               <-------MYC2                                               ------->MYC2                                              --------->TGA1a                                              =====================bZIP_DOF  <---------ARR14(2)                       ------->GAMYB  --------->ARR14(2)        *TSS           =============MYC_MYB  --------->GLK1(2)       <-----------TBP <---------ALFIN1 <---------GLK1(2)       <----------DOF2 --------->ZAT14                                            - <---------ARR14(2)      ===============================bZIP_DOF                                    < ------>YAB1    <---------At4g35610     ----------->RAV1(1)                               <---------WRKY38(1) ----->At4g35610--------->At4g35610    --------->ANAC46      <<<<<<<<<TBF1                <---------WRKY12 --->DOF2   <-----------HVH21        --------->ANAC46   <----------DOF2                  --------->WRKY18(1)   gcagaatctgattttgtcaccagagtgcttttatagattacacaacacacgttcgtttctttcttcttctaacacactctgagtcttgaaggtcaacaac  22756700                <---------CCA1(2)           --------->bZIP60(1)           <---------bZIP60(1)      --------->YAB1      <---------ICU4                                                   <----------DOF2     --------->ICU4                                             <---------At4g35610            <-----   --------->YAB1              --------->At4g35610    <---------HSFB2a(2)                      ------ -------->HSFB2a(2)            <---------At4g35610    --------->HSFB2a(2)   <-----------GT1   <------ ---------HSFB2a(2) <----------DOF2        ------>NtERF2        --------->At4g35610         ---------   gtcgagaataatggcatcatctctttgtgcttcttctgccatcgctgccatttcttctccaaggtaagctcatctttttctctcttcttatcagttatca  22756800                           ------>ZmHOX2a(2)                          <------ZmHOX2a(2)                         <---------ARR14(2)                         --------->ARR14(2)             --------->DOF5.7(2)                         --------->ARR11(3)            --------->TOE1(3)                         <---------ARR11(3) <---------AHL20(2)                                   <--- ----ICU4              ----------->ARR10   --------------------->WRI1--------->YAB1              ---- --->YAB1   <------ZmHOX2a(1)  --------->REM1(2)       --------->TOE2(3)             <---------WOX13(1) ---YAB1    ======================HOX2a_HOX2a         <---------ANAC46        ------>ZmHOX2a(2)<----- >YAB1      =====================HOX2a_HOX2a--------->AHL20(2)      <---------YAB1 --------->ATHB12--   tcacttgctatgtaggaatgagactaagatccttgtacagttgtacttaattagtttcgttaacatgactatgatagtgatccattgattgggatttatg  22756900                         ----------->GT1                     <---------RAP2.6(2)                    --------->ZAT18                    <---------ZAT18                                                                --        --------->LBD16<<<<<<<<<<AtWER                                                            <--    --------->ARR14(2) <-------GAMYB                                                             ----    <---------ARR14(2)<---------MYB46(3)                                                   <---------MYB55(2) ------ARR11(3)  <---------ANAC58                    <---------TOE2(3)                     --------->MYB46(3) ----->ARR11(3)--------->ALFIN1            <---------ATHB12                            ------>ZmHOX2a(2) ----YAB1   --------->GLK1(2)            --------->WOX13(1)                  <---------ANAC58    <--- ---->ZmHOX2a(2) <---------ANAC58       ------>ZmHOX2a(2)   <---------TOE2(3)<---------ANAC58    <---   atctagtatccgagaatgtgtgtgcggttgtaaaattagtgatccatcatccatttagattaaacgttgtgcgactattgtttgtgtgatccaaacaccg  22757000                                    <---------ZAT6                                  <------MYB83                                                <------MYB83                                  <------MYB46(1)                                             <------                                 <---------AtMYB61                                            <------MYB46(1)                                 <---------MYB46(3)                                           -------                                 --------->MYB46(2)                                        <---------ANAC58                                 --------->MYB111(1)                                       <---------ANAC58                                 <---------DEAR3(1)                                        <---------ANAC46             --------->YAB1      --------->MYB111(2)                                      <---------MYB46(3)             --------->AHL20(2)  --------->MYB55(2)                                    <---------ANAC58             <---------AHL20(2) <--------P                                      --------->ZAT18 ---->ZmHOX2a(2)              --------->ATHB12                                  <---------ZAT14 ----ZmHOX2a(2)               <---------MYB46(3)                                <---------ZAT18   --- ----->ARR14(2)            <---------AtLEC2                                     --------->ZAT14   --- --------ARR10           <---------YAB1     <---------TOE2(3)          --------->YAB1  <---------ANAC58 ------ARR14(2)     ------->TEIL<---------MYB55(1)                    <---------YAB1   <---------ANAC46   atctgccctatgtaataatatgaatttatgcatggttggtgttattgaagttgtgactaaatttttagggctatgatatatgtgcagtttcttgggtggt  22757100  Previous    Next  AGI:  At3g61470.1    Description:  LHCA2 (Photosystem I light harvesting complex gene 2); chlorophyll binding. similar to LHCA6 (Photosystem I light harvesting complex gene 6), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G19150.1); similar to LhCa2 protein [Brassica juncea] (GB:ABO71660.2); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) Range:  from: 22756628    to: 22758257    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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