Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    x                                                                                                    x                                                                                                   xx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                 xxxx                                                                                                 <---                                                                                                 <---                                                                                                 xxxx                                                                                                 <---                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 <---                                                                                                 <---                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                              xxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                            xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                        --------->MYB52(1)                                                                                        xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              ----------->GT1xxxxxxxx                                                                              <---------ANAC58xxxxxxx                                              --------->ZAT6                  <---------ANAC58xxxxxxx                                            <-----------GT1                   <---------ANAC46<xxxxxx                                           <-----------GT1                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                      <---------AHL20(1)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                      --------->AHL20(2)                  <---------AHL20(2)<xxxxxxxx                                 <---------AHL20(2)             <----------DOF2      xxxxxxxxxxxxxxxx                                 --------->AHL20(2)            <---------ANAC58      <xxxxxxxxxxxxxxx                                 <---------AHL20(1) <---------YAB1       --------->AHL20(2)xxxxxxxxxx >AHL20(2)      <-----------------AGL2<---------AHL20(2)       <---------ANAC58 <xxxxxxxxxxxxxxxxxxxx   gttcttctacattctaaatctatttctggctatattttattttatttaacacttatttttgttttgctttctaaattatatcgtgtaaaccaagggatta  22676800        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        xxxxxxxxxxxxxxx>smallRNA(si3)        --------->AHL20(2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------TEIL xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(si3) ------ANAC58 ---MYB83 xxxxxxxxxxxxxxxxxx>smallRNA(le3) ------ANAC58 xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------ANAC46 ---MYB46(1) ---->MYB59 ---->MYB111(1) ---->MYB46(2) xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxx>smallRNA(si3) xxxxxxxxxx>smallRNA(si3) xxxxx>smallRNA(si3) xxxxxxxxx>smallRNA(i2) xxxxxxxxx>smallRNA(se3) xxxxxxxxx>smallRNA(le3)                                           <------ZmHOX2a(2)               -- xsmallRNA(le3)                                                   --------->GLK1(2)         ------>MYB46(1) xxxxxxxxxxxxxx>smallRNA(le3)                                     <---------ARR14(2)        ------>MYB83 xxxxxxxxxxxxxxxx>smallRNA(si3)                   --------->ARR14(2)------>ZmHOX2a(2)     <---------MYB111(1) xxxxxxxxxxxx>smallRNA(le3)                <---------AHL20(2)     <---------ARR11(3)      <---------MYB59 xxxxxxxxxxsmallRNA(i)                    <---------AHL20(2)      --------->ARR11(3)     --------->ANAC55(1) xxxxxxxxsmallRNA(i)                      --------->AHL20(2)      --------->ARR14(2)     --------->ANAC46 xxxxx>smallRNA(le3)                     <---------YAB1          <------ZmHOX2a(1)<---------ANAC55(2) xxxxxxxxsmallRNA(fl3)              ----------->GT1            <---------TOE2(3)  --------->ANAC55(2) xxxxxxxxxxxx>smallRNA(si3)        <---------ARR11(3)      --------->YAB1<-----------GT1 --------->ANAC55(2) xxxsmallRNA(fl3)                  --------->ARR11(3)--------->ANAC46<----------DOF2     <---------ANAC55(2)   ggtgcaaagtttatatatagttagcctccgattttaagatgttattaattcatatacacaattataaggatctttatacaaaataagtaacacctaatct  22676900                                     <---------ICU4                                     --------->YAB1                      ---------->DOF2                                  <---------ICU4                     --------->YAB1                                  --------->YAB1                     --------->WOX13(1)                                 --------->ICU4                    <---------YAB1        <---------LBD16                               --------->YAB1                     --------->TOE2(3)     <-----------RAV1(1)                     --------->YAB1 <---------YAB1              <---------YAB1       --------->GLK1(2)              <----------DOF2--------->AHL20(2)              --------->ARR11(3)      --------->ARR14(2)             --------------------->WRI1       --------->ATHB51<---------GLK1(1)      <---------ARR14(2) ------->YAB1<---------DAG2<----------DOF2 --------->YAB1    <---------ARR11(3)     <---------GLK1(2)   aacatcacaagactgccttttaagcatagcttttaataatcataagcataatttgttttgttagatatcattaatcaaagggcaaagaatctgggggtct  22677000                                               <---------ARR14(2)                                  <-                                               --------->ARR14(2)                                  <-                                   ---------->DOF2                      ---------->DOF2      <-------                                --------->TOE1(3)  --------->LBD16 --------->AHL20(2)        --------                       <---------ANAC46       <---------GLK1(1)   <---------AHL20(2)      ------->TEIL                       <---------ANAC58   ----------->GT1    --------->At5g28300       --------->ANAC55(2)                       ----------->GT1   --------->DAG2     <---------ZAT6             <---------ANAC55(2) <----------ID1        <---------ANAC58 ---------->DOF2     ----------->GT1        <-----------HVH21   aaaatgacaaaaacaatacaacatggggtgaatacctgaaagaaaagtaaatccgagttatactgtaaataatataaagcttatgggtcatgtatttatt  22677100                                                                                                  ---                                                                                          <------NtERF2                                                                                          --------->ATERF1(1)                                                                                         ------>NtERF2                                                                                         --------->LBD16                                                                                         <---------ATERF1(1)                                                                                        --------->DEAR3(1)                                                                                        <---------DEAR3(1)                                                                                        --------->ATERF1(2)                                                                                        <---------ATERF1(2)                                                                                       <---------LBD16                                                                                       --------->ATERF1(1)          ---------->DOF2                                                              <------NtERF2      --------->YAB1                                                                   --------->RAP2.3(1) --------->TOE2(3)                                        *TSS     --------->WRKY12   <---------RAP2.3(1) --------->TOE1(3)                                      ----------->GT1               <---------ATERF1(1) --------TOE2(3)                                       <------ZmHOX2a(1)     >>>>>>>>>MYB98<---------ANAC46 --------TOE1(3)                                 ---------->DOF2   ----------->HVH21  ------>NtERF2 --AHL20(2)          <---------YAB1          ---------->DOF2 --------->GLK1(2)  ---------->DOF2   <-- ->AHL20(2)       --------->ICU4    --------->GLK1(2) ----------->GT1  ------>NtERF2 --------->ANAC46   taacgtaaacataaaaggccattttgataaatagtgagagtctgaaaaaaagaaagaggagaaaatccattgacgccctaacaaaagacgccggcgagtg  22677200                                   --------->ANAC46                                   --------->ANAC58                                  ------>MYB83                                  ------>MYB46(1)                                ------->GAMYB                              --------->ANAC46                              -------->P --------->ANAC58                              --------->ANAC58                              ------>MYB83       <----------DOF2        --------->ANAC58                                   <<<<<<<<<TBF1       <---------DAG2         >>>>>>>>>MYB98                               <<<<<<<<<TBF1  <-----------TGA1            ------>MYB46(1)                      <------------------------ANAC81  <-----------HVH21          ------>MYB46(1)      <-----------GT1 <---------ANAC58 --------->ANAC46            ------>MYB83--------->ANAC46         <---------ANAC58  <<<<<<<<<TBF1 ------>ARR14(2)     ------>ZmHOX2a(1)   --------->ANAC58      <----------DOF2<<<<<<<<<TBF1  <<<<<<<< -------ARR14(2)   <---------ANAC46--------->ANAC58 --------->TOE2(3)   <<<<<<<<<TBF1    <----------DOF2   tattcgtcactttctctagtttcctgtaacccaacccactcaaacgaaattttttcttaatctctctttcgttcttcttcttcttcttcttctttagatt  22677300                                                               ---------->ID1                                                     --------->ARR14(2)                <-----------ARR10                                                     <---------ARR14(2)                <---------ARR14(2)                                                    ------>NtERF2                      <---------ARR11(3)                                                    <------NtERF2                      --------->ARR14(2)                                                   <---------SPL7                      --------->ARR11(3)                      --------->ARR14(2)           ----------->HVH21                 --------->LBD16                      <---------GLK1(2)           <---------ANAC58                  <---------HSFB2a(2)                      <---------ARR14(2)          <---------ANAC46             <---------KAN4(1)                <---------HSFB2a(1)               <---------ANAC58     <---------AHL20(2)------>ZmHOX2a(2)               <---------GLK1(1)               --------->ALFIN1<---------TOE2(3)--------->KAN4(2)               --------->GLK1(1)       <---------MYB52(1)    <---------ANAC46  --------->HSFB2a(1) -- <RAP2.2   --------->YAB1   <----------DOF2  <-----------RAV1(1)      <---------AHL20(2)<------ZmHOX2a(2)   gttgtaattccaatcggaactctcgattcgctttcttctccgttcttctgtggcggaccggttttgtggttttttatttgaacattcccgatcttgccct  22677400                                      --------->ANAC58                                  --------->ANAC46                          <---------TOE2(2)                          <---------TOE1(2)                         --------->STY1(1)                                         <----------DOF2                    <-----------GT1   --------->ANAC58                   <---------ANAC58           -        <------ZmHOX2a(2)<---------STY1(1)              <---------GLK1(2)<---------ANAC58        ---- ------->GLK1(1)<----------DOF2 <-----------GT1       --------->LBD16 <----------DOF2  ---------->ID1   gagttccacgatcagtttctttaaaccctaggttttacacaagcattctgtttctccagattatcgcagactctttcgttctattctttgtagttttgta  22677500                                                                                             --------                                                                                             <-------                                                                                          --------->LBD16                                                                                       --------->MYB52(1)                                                                                     --------->MYB46(3)                                                                                  --------->CCA1(2)                                                                                  <---------GLK1(1)                                                                                  --------->GLK1(1)                                                                                 <---------ARR11(3)         <---------MYB52(1)                                                      --------->ARR11(3) --------->ARR11(3)                                                              <---------ARR14(2) <---------ARR11(3)                          <------ZmHOX2a(2)        --------->MYB52(1)<---------LBD16 ---------->GT1   <---------TOE2(3)      <---------HSFB2a(2)  --------->ICU4     --------->ARR14(2) ------>DOF2      <---------TOE1(3)      --------->HSFB2a(2)  <---------YAB1 <------ZmHOX2a(1)<------   aaaggtatttcggtagatttagggtttgtctgtgtctagttttcgagatcgagagagatttgtgatgaatactaacagaggaagatatccaccgggtgtt  22677600                                                          ------->GAMYB                                                          --------->AtMYB61                                                          <---------ALFIN1                                                         <---------MYB55(2)                                                         --------->MYB46(3)                                                        -------->P                                                       ------->GAMYB                                                      <---------MYB55(2)                                                      <---------MYB111(1)                 ------>NtERF2                        <---------MYB52(2)                --------->DEAR3(1)                    <---------MYB111(2)               --------->ATERF1(1)                    --------->MYB46(3)                 <---------MYB52(1)              <---------ATERF1(1)                   ----------->RAV1(1)                  <---------ARR14(2)              <---------RAP2.3(1)                 --------->At4g35610            <---------WRKY12      <---------ANAC58                            <------NtERF2        --------->At4g35610      <---------ANAC46--------->ARR14(2)    --------->RAP2.6(3)    --------->ARR14(2)    --------->ARR14(2)      <---------ANAC58--------->GLK1(2)    --------->ARR14(2)      <---------ARR11(3)   <-------GAMYB     --------->ALFIN1 <---------ARR14(2)   <---------ARR14(2)--------->AtMYB61   <---------WRKY38(1) ->ALFIN1   --------->ZAT18      --------->YAB1   <---------At4g35610  <---------At4g35610 --------->KAN4(2) --MYB46(3) <---------ZAT18     <---------YAB1   --------->RAP2.6(2)<------ZmHOX2a(2)   --------->At5g28300 -GAMYB --------->ALFIN1    <---------GLK1(2)  --------->At4g35610 --------->ARR11(3)  ----------->GT1   ggaacgggtcgtggtgcgcctccgaatccagattatcatcagtcgtatcggcagcaacaaccacctcaagatcagcagtatgttcaacgcggttattctc  22677700  Previous    Next  AGI:  At3g61240.1    Description:  DEAD/DEAH box helicase, putative (RH12). Identical to DEAD-box ATP-dependent RNA helicase 12 (RH12) [Arabidopsis Thaliana] (GB:Q9M2E0;GB:Q9ZS08); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT4G00660.2); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT2G45810.1); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT4G00660.1); similar to DEAD-box ATP-dependent RNA helicase 8 (GB:Q6H7S2); similar to unnamed protein product [Vitis vinifera] (GB:CAO62784.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75439.1); contains InterPro domain RNA helicase, DEAD-b Range:  from: 22677158    to: 22680732    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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