Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           <----------DOF2                                                                                      --------->GLK1(2)                                                                                  <---------HSFB2a(2)                                                                                  --------->HSFB2a(2)                    --------->MYB52(1)    <---------ARR14(2)                   <-----------GT1         ----------->GT1    ---------->DOF2          -------->P     <---------ANAC58 --------->ARR14(2) --------DOF2   --------->AHL20(2)        --------->ARR14(2)        <---------ANAC58 <---------ARR14(2) --MYB52(1)     --------->YAB1           <------ZmHOX2a(1)        --------->GLK1(2)  <---------GLK1(2)   cttttcaagagaggttaataaaaaacagagcaaagaaaacagaggatttgttagcaacctgtttggaaattcttgctgaaatttccagattctttgaaga  22676200                                                           ---------->DOF2                                                     <---------ARR14(2)                                                     --------->ARR14(2)                                                    <---------CCA1(2)                                                  <---------ANAC55(2)                                                  --------->ANAC55(2)                                                 <-------TEIL                    <----------DOF2                                                <-----------GT1          <---------ARR11(3)             <---------ANAC58                --------->MYB111(1)         --------->ARR11(3)             <---------ANAC58                ----------->GT1         ---------->DOF2   gctgttcaaaatgggtcttgcaatacaaaactccatccatggatgagtagttacatatctgaaaaggagaagaaagatgttctctttgtgtttttttttt  22676300                                                                            <---------ANAC58                                                                       --------->YAB1                                                                  ----------->HVH21                                                                ----------->RAV1(2)                                                                <---------At4g35610                                                                --------->At4g35610  --------->DAG2                  --------->DAG2                               ------->TEIL <---------ANAC46                 ---------->DOF2                              <---------ALFIN1----------->GT1               <------ZmHOX2a(1)       --------->ANAC46      <---------At4g35610<---------YAB1     <<<<<<<<<<<<<<<<<LFY              --------->O2          <------NtERF2  <---------ANAC58      ---   catgagggaacaatggaggaaaaggaagatagatagataccacgagagtgccattgcaatggctgcacctgaagcatgacttgtgataaggcattccttc  22676400                                                                       <------NtERF2                                                                     --------->DREB2C(2)                                                                     --------->RAP2.3(3)                                                                     --------->RRTF1(3)                                                                     --------->DEAR3(1)                                                                     --------->RAP2.6(2)                                                                     --------->RAP2.3(2)                                    --------->ANAC58                 --------->RRTF1(2)                              <-----------HVH21                     --------->RAP2.3(1)                    <---------ARR14(2)                              --------->RRTF1(1)                    --------->ARR14(2)                              --------->ORA47(2)                 <---------ANAC55(2)--------->ANAC46                --------->ERF1                 <---------ANAC46   --------->ANAC58<-------GAMYB --------->ANAC46              <----           <-------TEIL  <---------RAP2.6(3)       <---------MYB46(3)--------->ANAC46      <<<<<<<<<TBF1 ------->DOF2  --------->MYB52(1) <---------ALFIN1 <-----------RAV1(1)------>NtERF2     <<<<<<<<<TBF1   caaagtcatcaagtccataacgtataccgtcttgtcacacgccttgcatttgtctgttgtccctgtaaacgccgccattggtatctcttcttcttcttct  22676500        ---------->DOF2                                                 *TSS      <---------ANAC55(2)                                               <---------TOE2(3)      --------->ANAC58                                           --------->ANAC46      --------->ANAC58                          <-----------RAV1(1)  <---------ATHB12      <---------YAB1                   <<<<<<<<<TBF1             --------->ANAC58                <--- ------DOF2               <------ZmHOX2a(2) <----------DOF2      --------->ANAC58                ----   ttcaaattacgaaagagttggaagatggatcaaaagttttcttcttctttttgttgttcgtttagacacgaatcaaggtttgttttgccatcatctatga  22676600               <---------AHL20(2)              --------->YAB1             <---------YAB1          --------->AHL20(2)          <---------AHL20(2)                                             <-------TEIL          <---------YAB1                     ----------->GT1    <---------MYB46(3)       <----------DOF2               <---------RVE1(1)         <---------AtMYB61      <---------DAG2                <---------ARR11(3)         <---------YAB1               ---------    ------>NtERF2                   --------->ARR11(3)      <---------YAB1            --------->ZAT18 ------At4g35610              <------------CBF--------->At5g28300<-------GAMYB        <---------ZAT18 ----->At4g35610   --------->YAB1 <---------TOE2(3)       <---------At4g35610     <------ZmHOX2a(1)   gctctctgcctttttattatatcaaaatcatggattgagatttttaggggtaaaattttcttctgatggttgagattcaaatgaggagagcccttaaaat  22676700                                                                                                    x                                                                                                    x                                                                                                    <                                                                                                   xx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                 <---                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 <---                                                                                                 xxxx                                                                                                 <---                                                                                                 xxxx                                                                                                 <---                                                                                                 <---                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                              xxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                            xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                        --------->MYB52(1)                                                                                        xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              <---------ANAC46xxxxxxx                                                                              ----------->GT1xxxxxxxx                                              --------->ZAT6                  <---------ANAC58<xxxxxx                                            <-----------GT1                   <---------ANAC58xxxxxxx                                           <-----------GT1                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                      <---------AHL20(2)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                      --------->AHL20(2)                  <---------AHL20(2)<xxxxxxxx                                 --------->AHL20(2)             <----------DOF2      xxxxxxxxxxxxxxxx                                 <---------AHL20(2)            <---------ANAC58      <xxxxxxxxxxxxxxx                                 <---------AHL20(1) <---------YAB1       --------->AHL20(2)xxxxxxxxxx >AHL20(2)      <-----------------AGL2<---------AHL20(1)       <---------ANAC58 <xxxxxxxxxxxxxxxxxxxx   gttcttctacattctaaatctatttctggctatattttattttatttaacacttatttttgttttgctttctaaattatatcgtgtaaaccaagggatta  22676800        xxxxxxxxxxxxxxx>smallRNA(si3)        --------->AHL20(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------TEIL xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------ANAC46 xxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---MYB46(1) xxxxxxxxxxxxxxxxxx>smallRNA(si3) ------ANAC58 xxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------ANAC58 ---MYB83 ---->MYB46(2) ---->MYB111(1) ---->MYB59 xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxx>smallRNA(si3) xxxxxxxxxx>smallRNA(si3) xxxxxxxxx>smallRNA(se3) xxxxxxxxx>smallRNA(le3) xxxxx>smallRNA(si3) xxxxxxxxx>smallRNA(i2)                                            <------ZmHOX2a(2)               -- xsmallRNA(le3)                                                   <---------ARR11(3)        ------>MYB83 xxxxxxxxxxxxxxxx>smallRNA(si3)                                   --------->ARR11(3)        ------>MYB46(1) xxxxxxxxxxxxxxx>smallRNA(i2)                     --------->ARR14(2)------>ZmHOX2a(2)     <---------MYB111(1) xxxxxxxxxxsmallRNA(i)                     <---------AHL20(2)     --------->GLK1(2)       <---------MYB59 xxxxxxxxxxxx>smallRNA(le3)               --------->AHL20(2)      <---------ARR14(2)     --------->ANAC46 xxxxxxxxsmallRNA(i)                      <---------AHL20(2)      --------->ARR14(2)     --------->ANAC55(1) xxxxx>smallRNA(le3)                     <---------YAB1          <------ZmHOX2a(1)<---------ANAC55(2) xxxxxxxxsmallRNA(fl3)              ----------->GT1            <---------TOE2(3)  --------->ANAC55(2) xxxxxxxxxxxx>smallRNA(fl3)        <---------ARR11(3)      --------->YAB1<-----------GT1 --------->ANAC55(2) xxxsmallRNA(fl3)                  --------->ARR11(3)--------->ANAC46<----------DOF2     <---------ANAC55(2)   ggtgcaaagtttatatatagttagcctccgattttaagatgttattaattcatatacacaattataaggatctttatacaaaataagtaacacctaatct  22676900                                     <---------ICU4                                     --------->YAB1                      ---------->DOF2                                  --------->YAB1                     --------->WOX13(1)                                  <---------ICU4                     --------->YAB1                                 --------->ICU4                    <---------YAB1        <---------LBD16                               --------->YAB1                     --------->TOE2(3)     <-----------RAV1(1)                     --------->YAB1 <---------YAB1              <---------YAB1       --------->GLK1(2)              <----------DOF2--------->AHL20(2)              --------->ARR11(3)      <---------ARR14(2)             --------------------->WRI1       --------->ATHB51<---------GLK1(1)      --------->ARR14(2) ------->YAB1<---------DAG2<----------DOF2 --------->YAB1    <---------ARR11(3)     <---------GLK1(2)   aacatcacaagactgccttttaagcatagcttttaataatcataagcataatttgttttgttagatatcattaatcaaagggcaaagaatctgggggtct  22677000                                               <---------ARR14(2)                                  <-                                               --------->ARR14(2)                                  <-                                   ---------->DOF2                      ---------->DOF2      --------                                --------->TOE1(3)  --------->LBD16 --------->AHL20(2)        <-------                       <---------ANAC46       <---------GLK1(1)   <---------AHL20(2)      ------->TEIL                       ----------->GT1    ----------->GT1    --------->At5g28300       <---------ANAC55(2)                       <---------ANAC58  --------->DAG2     ----------->GT1            --------->ANAC55(2) <----------ID1        <---------ANAC58 ---------->DOF2     <---------ZAT6         <-----------HVH21   aaaatgacaaaaacaatacaacatggggtgaatacctgaaagaaaagtaaatccgagttatactgtaaataatataaagcttatgggtcatgtatttatt  22677100  Previous    Next  AGI:  At3g61230.1    Description:  LIM domain-containing protein. similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G45800.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74803.1); contains InterPro domain Zinc finger, LIM-type; (InterPro:IPR001781); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 22675400    to: 22676572    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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