Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         xxxxxxxxxxxxxx                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         xxxxxxxxxxxxxx                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)          xxxxxxxxxxxxxxx                                  ----------->GT1                                xxxxxxxxxxxxxxxxxxxx                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <xxxxxxxxxxxxxxxxsmallRNA(i)                               --------->CCA1(2)                               xxxxxxxxxxxxxxxxxxxxxx                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <---------CCA1(2)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            --------->YAB1 ----------                         <------ZmHOX2a(1)----------->GT1                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------->YAB1        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)           ---------->DOF2xxxxxxxxxxxxxxxxxxx ---->YAB1          <---------REM1(1) ---------->DOF2             xxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----YAB1          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---AHL20(2)  <---------ANAC58<---------ARR11(3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -->AHL20(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -->AHL20(2)  <---------ANAC58--------->ARR11(3)      --------->GLK1(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ->YAB1       <---------ANAC46xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<--   ataagaagaattgttagcgtaaatgtaggagagatatagttaaagggcaaatcgagaattttgtctaacaaaagtgtctcataacttaaaaatgcctaaa  22673500                                                         --------->ARR11(3)                                                      --------->YAB1                                                     <---------YAB1         <----------DOF2                       <---------AHL20(2)         <---------DAG2                        --------->AHL20(1)      <-----------GT1                          --------->AHL20(2) xxxxxxxxx>smallRNA(le3)                       <---------AHL20(1) xxxxxxxx>smallRNA(si3)                       --------->AHL20(2) xxxxx>smallRNA(le3)                        --------->YAB1 xxx>smallRNA(le3)               <---------AHL20(2) --------->AHL20(1)            --------->DEAR3(1) >smallRNA(le3)                 --------->YAB1<---------AHL20(2)               ------->GAMYB -------- ------->AGL1                 <---------AHL20(1)    --------->AHL20(2)        --------->MYB46(3) xxx>smallRNA(si3)            --------->AHL20(2)    <---------AHL20(2)      <-----------GT1 <-------- --------ID1   ---------->DOF2--------->AHL20(1)   --------->YAB1    ----------->GT1      --------->YAB1   tcgacaaataactttttaaaagtgtctcacaatataatattctctaaaataaattataataacttgtaagtttgtaattaaccatcgcccaaatatgata  22673600                                                                                            ---------                                                                                            <--------                                                                                         <-----------GT1                                                                                      --------->YAB1                                                                                     <---------YAB1    <---------YAB1                                              <---------TOE1(3)    <---------AHL20(2)  --------->YAB1                         <---------TOE2(3)      <---------TOE2(3)   <---------AHL20(1) <---------YAB1                         --------->MYB52(1)     <-----------GT1      --------->AHL20(2) ->YAB1                            --------->ICU4         --------->ICU4            --------->AHL20(1) -YAB1                            <----------DOF2        <----------DOF2           --------->YAB1   actatcatcagtaacgttttgttccaaacaaattgcctttattaacgaaaacaaattgcctttattaacgttttgttccaaacaaatataataactttag  22673700                                                                      ----------->GT1                                                                 ----------->HVH21                                                                 --------->TGA2(2)                                                               --------->ANAC46                                                               ======================================                                                               --------->bZIP60(2)                                                               --------->TGA1a                                                               <---------O2                                ----------->GT1                --------->bZIP60(1)                                <----------ID1                 --------->O2  --------->AHL20(1)                              ===========================================bZIP_DOF                              ---------->DOF2                  <---------bZIP60(1)                          --------->ANAC58                     <---------TGA1a                      <                          --------->ANAC58            --------->YAB1 <---------TOE2(2)              <                  <---------AHL20(2)                 <---------YAB1 <-----------RAV1(2)         ----- --------->TOE2(3)<---------AHL20(1)              --------->ICU4<-----------HVH21             <------ >TOE2(3)         --------->AHL20(1)         --------->At5g28300<-----------TGA1              ------- --DOF2           --------->AHL20(2)        ----------->GT1   <-----------STF1                -------   ttatctcaaatatgtgtcaatataatgcaagaaaaagaaaaaaaaactgtaaattatgaaaatcgacgtcacaggtaaatatactaacatgttcaacttt  22673800                                                                          <---------ANAC58                                                                     <---------ANAC58                                                                     --------->TGA1a                                                                     --------->ANAC55(2)                                                                     --------->O2                                                                     <---------ANAC46                                                                     <---------ANAC58                                                                     <---------bZIP60(2)                                                                     <---------TGA1a                                                                     <---------O2                        --------->ATERF1(1)                          <---------ANAC55(2)                        <------NtERF2                               <-----------------------TaNAC69(2) ====bZIP_DOF          <-----------HVH21                            <-------TEIL ---------AHL20(2)     ------>NtERF2                             --------->At4g35610 ---------ATHB51      --------->DEAR3(1)                         <---------ZAT2        <---------ALFIN1 ---->AHL20(2)        <---------DEAR3(1)                         <---------At4g35610 ------>NtERF2 ----DOF2             <---------ANAC46                ------------>CBF    <---------ANAC58 -->TOE1(3)         ------->GAMYB                    --------->TOE2(3)    <---------ANAC46          < -->TOE2(3)      --------->MYB52(1)                ------->TEIL  --------->ZAT2<---------MYB52(1) <--   aaataatgcaagactaaaacaacggcgtcggattagaagtctaatctcccatgaacatcaatttctgagctacgtggcttcgtttgcctccacatttctt  22673900                                                   <---------ICU4                                                   --------->ATHB12                                                   -------->ATHB1                                                   <--------ATHB1                                                   --------->ATHB51                                                  <---------ATHB51                                                  <---------ATHB12                                                  --------->ICU4                                                  <<<<<<<<<<AGL20                                                  <---------YAB1                                                  <<<<<<<<<<AGL22                                                  <<<<<<<<<<AGL24                         <-------TEIL                                               ------------>ATHB5                      <---------HSFB2a(1)           <---------ZAT18                  --------->ANAC46                          <--------------           --------->ZAT14--------->LBD16   --------->ANAC58                          --------->DAG2 ---------TOE1(2) --------->ANAC46 *TSS     --------->ANAC58  <----------DOF2       ---------->DOF2 -------SPL7     <---------At5g28300 ---------->DOF2       --------->GLK1(2)--------->LBD16   cgtatggtttctgtgcattcactgcatgcgcataagaaaaaaagaaacgccaattattgatattctttgtctaaaacccagaaataaaaaggttcgaaaa  22674000      --------->ARR14(2)      <---------ARR14(2)     <------ZmHOX2a(1)                 --------->ARR11(3)              <------MYB46(1)  <---------At4g35610      <---------ARR11(3)                          <------MYB83  <------NtERF2            --------->ARR11(3)              --------->TOE2(3)                  <------  --------->At4g35610     <---------CCA1(2) --------->ATHB12          --------->MYB59   <---------GLK1(2) -AtSPL8      <---------TOE1(2)    <---------MYB52(1)      --------->YAB1   <---------YAB1-----------   tggcagaggaaactccaaggtatgtcttaaatcttctcttagttcttgatttagtctgtaatcttagtgagtttggttctgattttctcagattgtttaa  22674100          --------->CCA1(2)          --------->ARR14(1)                                       --------->STY1(2)          <---------GLK1(1)                                        <---------STY1(2)         <---------ARR11(3)                          --------->GLK1(1)         <---------ARR14(2)                          --------->CCA1(2)         --------->ARR14(2)                         --------->ARR11(3)         --------->ARR11(1)                         <---------ARR11(3) ---AHL20(2)                   --------->MYB52(1)   --------->ARR14(2)                             <- >GT1    --------->ARR11(3) <---------At4g35610     <---------ARR14(2)   <---------ZAT14           --   tggtttttgtagatatgctgtagttactggagcaaacagagggattggatttgagatatgcagacaattagctagtgaagggattagagttgttttgacc  22674200                                                                                                    -                                                                                                 <---                                                       --------->GLK1(1)                     <-------                <------ZmHOX2a(1)               <---------ANAC58                         <---------REM1(1)               <---------ZAT18                  <---------ANAC58                         <-----------RAV1(1)     --------->ANAC58                         --------->ARR11(3)                   --------->ZAT2----     --------->ANAC58                     ---------->DOF2                          --------->At4g35610 --------HSFB2a(2)                    --------->ZAT14  <---------GLK1(1) <----------DOF2 --------->bZIP60(1) ------->HSFB2a(2)      <---------At4g35610   <---------ARR11(3)---------->DOF2 <---------At4g35610--   tctagagacgaaaacagaggacttgaagctgttgagacactgaagaaagagcttgagatttctgatcaaagccttctttttcatcagcttgatgtcgctg  22674300                                                       <---------CCA1(2)                                      --------------->AGL15                                      <---------------AGL15                                     ----------------->AG             <--------HAHB4                                     ----------------->AGL2           <---------ICU4                                     <---------------AGL15            --------->ATHB51                                     --------------->AGL15            --------->ATHB12                                     ----------------->AGL1          <---------YAB1                                    <-----------------AGL1           --------->ICU4 ------>ZmHOX2a(1)                  ----------------->AGL2       <------MYB46(1) -------->TOE1(2)                   ----------------->AGL1       <------MYB83 ------ARR14(2)                     <-----------------AGL2     <--------P            <----------DOF2 --At4g35610                        <-----------------AG<---------ARR11(3)   --------->ZAT14   <----- ----->ARR14(2)                     ----------------->AG--------->ARR11(3)   <---------ZAT18   ------ ---->ZmHOX2a(2)            ----------->GT1            <---------GLK1(1)<---------YAB1         <-----   atcctgctagtatcacatctcttgctgagtttgtgaaaacccaatttgggaaactcgatatcttggtaggcattattagtaaactctctttgatcagttt  22674400  Previous    Next  AGI:  At3g61220.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G24190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39528.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 22673935    to: 22675468    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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