Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  <---------ICU4    --------->YAB1                                                             <---------ICU4 <---------ICU4 <--------HAHB4                                                            --------->ICU4  <--------HAHB4 <---------ICU4                                                          <--------HAHB4    --------->YAB1<---------YAB1                                                          --------->YAB1 <---------ICU4 <--------HAHB4                                                          <---------ICU4<---------YAB1  <---------ICU4                                                         <---------YAB1 --------->ICU4  --------->YAB1                                                       <---------ICU4 <---------ICU4   <---------YAB1          --------->ARR11(3)                          --------->ICU4  --------->YAB1 <---------ICU4        --------->ANAC46                              <---------YAB1  <--------HAHB4<---------YAB1  --------->YAB1                                    --------->YAB1   <---------YAB1 --------->ICU4  <---------AHL20(2)                                <---------ICU4 <---------ICU4 <--------HAHB4  --------->AHL20(2)                                <--------HAHB4--------->ICU4  <---------ICU4 ------->YAB1                                      <---------YAB1 <---------YAB1 <---------YAB1 -------AHL20(2)                                 <---------ICU4 <--------HAHB4 <---------ICU4   <---- ----->AHL20(2)                                 --------->ICU4  --------->YAB1--------->ICU4 -------- ---AHL20(2)                                 <---------YAB1 <---------YAB1 <---------YAB1 --------->ICU4 -->AHL20(2)                  <---------AHL20(2)<---------YAB1 <---------YAB1 <---------YAB1 <-------   ataataatataagacattgtgtaagtttagttttaattcatgtcattgtcattatcattatcattatcattatcattatcattatcattatcattattat  22653900                --------->AHL20(1)                --------->AHL20(2)                <---------AHL20(2)               <---------AHL20(2)               --------->AHL20(2)            <---------ICU4           --------->ICU4      --------->YAB1         --------->AHL20(2)                            --------->ZAT14     <---------YAB1<---------YAB1--------->YAB1                            <---------ZAT14  <---------AHL20(2)         <---------AHL20(2)                       <---------GLK1(1)     <--------  --------->AHL20(2)<-----------GT1                               --------->ANAC58          --------- -----YAB1 <---------YAB1   --------->AHL20(2)           <---------TOE2(3) --------->ZAT18  --------- ->ICU4  --------->YAB1    <---------AHL20(2)     ---------->DOF2 --------->ANAC58    <---------DAG2 --YAB1 <---------YAB1<---------YAB1             --------->YAB1 <---------AtLEC2      <----------DOF2   tagttttattatcataattttattactattttaaattagaatttgagtctataaaagttaagttttgcaaggaaatgtgcagagacaactttttctataa  22654000                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   --                   --------->ARR14(2)                                                            <---                 --------->ANAC58                                                              ------         <---------HSFB2a(2)                                                                  -------   <---------TOE2(3)<------ZmHOX2a(2)    <---------ANAC58                                 <---------AHL20(2) -HSFB2a(2)      --------->ANAC58        <---------ANAC58                                 --------->AHL20(2) >HSFB2a(2)  --------->ANAC58   <-----------------AGL2 --------->YAB1              <----------DOF2 -- ------>AGL15--------->ANAC58<----------DOF2   --------->ANAC46    --------->REM1(1)   --------->TOE2(3)   gtataaacgtttgggaagcacgatccatttcctttccatttttgcttacacagagtatcacaagtgccttcatcacagttcttagctttcattaaaatat  22654100                              --------->DOF5.7(2)                              <---------MYB52(1)         <---------ANAC58   <---------ANAC58         <---------ANAC58   <---------ANAC58                <---------ICU4 --------bZIP60(1)       <----------DOF2            <---------AHL20(2) ------->ANAC58      <---------CCA1(2)              --------->AHL20(2) ------->bZIP60(1) <---------ANAC58             --------->AHL20(1)        <---------AHL20(2) ------->ANAC58    <---------ANAC58       >>>>>>>>>MYB98<---------AHL20(2)--------->AHL20(2) --------GT1       <---------ANAC46   --------->HSFB2a(2) --------->GLK1(2) --->ARR11(3)   ------>ZmHOX2a(1)   ------>MYB46(1)<---------AHL20(2) <---------AHL20(2)          <-- -->RVE1(1)    <---------ANAC58     ------>MYB83--------->AHL20(2)    --------->AHL20(2)         ---- ------->ANAC46<---------ANAC58<-----------GT1  <---------AHL20(1)   --------->AHL20(2) --------->AHL20(2)   cacgacacatttcttgtccttgcgtctctttcgttaccttccctaacaaatattttaaataatctttaaaaaaaaatttataaaaccaaaaaaaatgtat  22654200                                                --------->YAB1                           <---------AHL20(2)              ----------->GT1                 --------->ARR11(3)                  <----------DOF2       ---------->DOF2          --------->TOE1(2) <---------YAB1               --------->ARR11(3) -------AHL20(2)   <---------------AtSPL3 <------ZmHOX2a(1)                    <---------ARR11(3)  -- ----->AHL20(2)--------->At5g28300  <<<<<<<ZML2<------ZmHOX2a(2)       <---------ARR14(2)--------->AHL20(2)   taaatgttttaaagaatggtaaatgtaaggcaaacctagaacgaggacgatcatgaaaatagcgagaatggtggatttagacatctttgattaaaatttc  22654300                                                                                      <-----------TBP                                                                                    <---------AHL20(2)                                                        <-----------TBP             --------->AHL20(2)                                                        <---------AHL20(2)          <-----------TBP                                                      <-----------TBP           --------->AHL20(2)                                                      --------->AHL20(2)        <---------AHL20(2)                                                      <---------AHL20(2)        <-----------TBP                                                    <---------AHL20(2)        <---------AHL20(2)                                                    <-----------TBP           --------->AHL20(2)                                                  <-----------TBP           --------->AHL20(2)                                                  <---------AHL20(2)        <---------AHL20(2)                                                  --------->AHL20(2)        <-----------TBP                                                --------->AHL20(2)        --------->AHL20(2)                                                <---------AHL20(2)       <---------AHL20(1)                                                <-----------TBP          --------->AHL20(1)                            --------->AHL20(1)<---------AHL20(2)     <---------AHL20(2)                            <---------AHL20(1)--------->AHL20(2)    <---------AHL20(2)<---------AHL20(2)                        <---------YAB1        <-----------TBP       --------->AHL20(2)--------->AHL20(2)                      --------->YAB1        ----------->TBP     --------->AHL20(2)<---------AHL20(2)                     <---------YAB1       --------->AHL20(2)    <---------AHL20(2)--------->AHL20(2)             --------->GLK1(1)           <---------YAB1 --------->AHL20(2)----------->TBP            --------->ARR14(2)          --------->AHL20(2)    --------->ANAC46<-----------TBP       --------->MYB52(1)--------->AHL20(2)<---------AHL20(2) --------->ANAC55(2) <-----------TBP  <- --------->GT1     <---------At4g35610--------->ICU4--------->AHL20(2)  --------->AHL20(2)     <-----   agagtaaaaaaacagaaatgctgatgataatatatatgtgaatattatatatatatatatatataagtaattaaatatatatatatatatatatagtatg  22654400                                             ----------->GT1                                     <---                                         <---------AHL20(2)                             <---------AHL20(2)                                        --------->AHL20(2)                            ----------->TBP                                        <---------AHL20(2)                           <---------AHL20(1)                                     --------->AHL20(2)                              --------->AHL20(1)                 --------->AHL20(2) <---------ATHB12                            --------->AHL20(2)  -     ----------->GT1            --------->AHL20(2)                           --------->YAB1  -------- ------TEIL     --------->AHL20(2)  --------->AHL20(2)   --------->ATHB12  <---------ARR11(3)-------- ----YAB1   --------->AHL20(2)  ------------>CBF<-----------TBP   ----------->GT1   --------->AHL20(2)   atacatgaagaaaaaaaaataaaaaatagacaaattcaataaataaatagttatatagatgatgggaatggaaacaaaatcataaaatatataaacatag  22654500                                                        <---------AHL20(2)       <-----------GT1                                  --------->AHL20(2)  <------------CBF   <---------CCA1(1)           <---------AHL20(2)   --------->AHL20(2)    <---------ARR11(3)   <---------RVE1(1)           --------->AHL20(2)   <---------AHL20(2)    --------->ARR11(3)  --------->ARR11(3)       <---------AHL20(2)       <-----------TBP       --------->AHL20(2)  <---------ARR11(3)      --------->AHL20(2)      <-----------TBP         <---------AHL20(1) <------ZmHOX2a(1)        <---------AHL20(2)      --------->AHL20(2)      <---------AHL20(2) ---ZmHOX2a(1)        --------->ICU4            <-----------TBP           --------->AHL20(1) ---------->GT1     --------->YAB1            <-----------TBP--------->AHL20(2) ->TOE2(2)          --------->AHL20(2)      <----------DOF2  <---------AHL20(2)--------->ATHB12 ->TOE1(2)     ------------>CBF--------->AHL20(1) <---------AHL20(2)----------->GT1                <-   gaaggatatttacaaaaatcaataaaaattaaataaaataagagagctttatatatatataatttaaattttgtaatatattgaatggtccaaattgcat  22654600                                              --------->TOE2(3)                                            --------->ARR11(3)                                  <----                                            <---------ARR11(3)                            --------->ARR11(3)                                           --------->CCA1(1)                              <---------ARR11(3)                                       --------->AHL20(2)                               --------->ICU4                          --------->ARR14(2)<---------AHL20(1)                     ----------->GT1                          <---------ARR14(2)--------->AHL20(1)                   <---------ANAC46            <<<<<<<<<GATA-1       --------->ARR11(3)                             <---------ANAC58    --------->YAB1       <------ZmHOX2a(1) --------->RVE1(1)                     <---------ANAC58 ---  <---------WOX13(1) ---------->DOF2 <----------DOF2   ------>MYB83           ----------->HVH21<----- --------YAB1    --------->YAB1   <---------ARR11(3)   ------>MYB46(1)   <---------AHL20(1)   <------   tctcattgatatttatctataaaaaaaggatttgaagttcttttaatatcttaaaccaaatgagggtttttgtaatatatgtgacttgtaaatatcatct  22654700                          --------->ANAC55(2)                                                       <                          --------->O2               ----------->GT1                                -  <---------AHL20(2)      <---------ANAC58       <---------YAB1                                 ----- ------DOF2               <---------ANAC58       ------>ZmHOX2a(1)   --------->ANAC58          ------ ------>AHL20(2)  <---------ANAC46             --------->YAB1--------->DAG2          --------->ANAC58 ----ICU4         <---------ANAC58          --------->WOX13(1)       --------->ANAC58--------->ANAC58 ---YAB1          <---------ANAC58        <---------ATHB12  ---------->DOF2        ---------->DOF2 <-   ttatatatatgtgtgaagttgtgtgtctacgtgtctaatatacaatcaatcctaatagaaaaaaaagttggacgcatttgatttggaaagcattcaagta  22654800  Previous    Next  AGI:  At3g61175.1    Description:  LCR52 (Low-molecular-weight cysteine-rich 52). Identical to Putative low-molecular-weight cysteine-rich protein LCR52 precursor (LCR52) [Arabidopsis Thaliana] (GB:P82766); similar to LCR53 (Low-molecular-weight cysteine-rich 53) [Arabidopsis thaliana] (TAIR:AT3G61177.1); contains InterPro domain S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); contains InterPro domain Knottin; (InterPro:IPR003614) Range:  from: 22653958    to: 22654284    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version