Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <----------DOF2         ------->MYC2         <-------MYC2         ------->PIF5                              <------NtERF2         <-------PIF5                             ------>NtERF2         <-------MYC3                            --------->ANAC58         ------->MYC3                            --------->ANAC58        --------->ANAC46                        ------>NtERF2        <---------ALFIN1                    --------->ANAC46        --------->ANAC58                    ----------->HVH21        --------->ANAC58                   --------->DEAR3(2)      <---------ALFIN1                     --------->MYB46(3)     --------->DEAR3(1)                   <--------------OsCBT    --------->DEAR3(2)                   --------->ARR14(2)   --------->PCF2                        --------->PCF5 ------>NtERF2                           --------->TCP16(1)                        <---------ALFIN1 ---------ANAC58                         <---------ARR14(2)             --------->At4g35610  <------- ---------ANAC58                        ------>NtERF2       --------->GLK1(2)    <---------ALFIN1 -------At4g35610                     <---------ANAC58      <---------ARR11(3)--------->ANAC58 --->At4g35610       <----------DOF2  <---------ANAC58      --------->ARR11(3)--------->ANAC58 ----At4g35610 <---------WRKY18(1)   <---------LBD16 <----------DOF2   --------->ANAC46------>ZmHOX2a(1)   tgccgagcccacgcgcttgaacgcgttttggatgtttaatgcggacccgacgcgcctttgaaaatctctatataagcagcgagccactccttcaataact  22525000                                                                               <-----------HVH21                                                                               <---------MYB52(1)                                                                              --------->LBD16                                                           <---------YAB1   <---------LBD16     <----                                               <---------ARR11(3) <---------DAG2          <---------MYB52(1)                                               --------->ARR11(3)<---------ANAC58    --------->PCF5                                  xxxxxxxxxxxxxxxx>smallRNA(i)   <---------ANAC58 --------->MYB59          <---------HSFB2a(2)    <---------ANAC58    <---------ARR11(3) <----------DOF2  <-------GAMYB --ARR11(3)                      <---------ANAC58------>ZmHOX2a(2)<----------DOF2 <---------AtMYB61   tcatttgaagttttcgaagaaaataaacgaggtttgcttccttctctctgatcttgatatttctattgctttttcttttccggtgaggtcccgttgttct  22525100                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                               <-----                                                                                              -------                                                                                            <--------                                                                                           --------->YAB1                  <------NtERF2                                                           <---------ATHB12                 ------>NtERF2           <---------MYB46(3)                               --------->MYB46(3)                <---------LBD16         <--------P                              --------->ARR11(3)                --------->LBD16        <---------MYB52(1)                       <---------ARR11(3)<--                <---------ANAC46       <-------GAMYB                   --------->LBD16  --------->WOX13(1)   <---------YAB1--------->LBD16      --------->LBD16               <---------ZAT2   --------->ANAC46 ------DOF2    <---------LBD16      <---------LBD16                 --------->ZAT2 ------------------   ttgttatttttgattttgccgggatagaaatagagttttccggttgttttccttctcgtctaacgtcccgagccgagaatgagttcttcgcaatcaccgt  22525200                                                            <------ZmHOX2a(2)                                                           --------->AGP1                                                           <---------ARR14(2)                                                           --------->ARR14(2)   --------->LBD16                                         --------->ARR11(3) ----->DEAR3(1)                                            <---------ARR11(3) ----->ETT(2)                                              <---------AGP1 ----->WRKY38(1)                                          <---------CCA1(2) ------->HVH21                                    ------>ZmHOX2a(2)       <------ZmHOX2a(2) ----->WRKY12                                    <------ZmHOX2a(2)       <---------ARR11(3) ------ETT(2)                                   --------->ARR11(3)       --------->ARR11(3) ------HVH21                                    --------->ARR14(2)      --------->GLK1(1) -->DEAR3(1)                                    <---------ARR14(2)      <---------GLK1(1)        ---- -At5g28300                                     <---------ARR11(3)--------->MYB52(1)            ----- -------ATERF1(1)                         <---------HSFB2a(2)<-----------------AGL3      <---------At4g35610 --->WRI1 <----------DOF2                 --------->HSFB2a(2)------>ZmHOX2a(2)           --------->At4g35610   cgaccccgagcgcttctcttgtcgattctagcgattcaaaacatccagacgatctgcctcagatctataaacggagatcagtttggacgtcttctgaaga  22525300                            <xxxxxxxxxxxxxxxxsmallRNA(i)                           --------->At4g35610     --------->ANAC58                         --------->DEAR3(2)        --------->ANAC58                       --------->ANAC46                        <---------At4g35610    --------->HSFB2a(2)                        *TSS                        <---------ZAT2         <---------HSFB2a(2)                        -----------                        --------->At4g35610   <---------LBD16                 <------------CBF  <----                        --------->ZAT2      --------->ARR14(2)   <---------ARR14(2)    -------->P  --                     --------->LBD16        <---------ARR14(2)   --------->ARR14(2)   <-----------GT1                    --------->LBD16        <---------SPL7       <---------RAP2.6(3) <---------GLK1(1)                   <---------LBD16    <---------REM1(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<----- ----->GLK1(2)<---------GLK1(1)       ----------->HVH21  --------->AtMYB61--------->HSFB2a(2)  ------ ---->ARR11(3)--------->ARR14(2)     <-----------HVH21  ------------>CBF <---------LBD16 --------->MYB46(3)   tgctgtttcttcatcgaattcccccgagcagacgactcccttcacggttcgggaagacaccaatgccgatatcgctcgggaattggatttacccgacgat  22525400            <---------SPL7      <---------ALFIN1     --------->LBD16    --------->DEAR3(1)    --------->RAP2.3(2)                                                                             <    --------->RAP2.6(2)           <---------AtMYB61                                                --   --------->RAP2.3(1)          ------>ZmHOX2a(1)   --------->GLK1(1)                        <-------GAMYB --------->ARR14(2)        <---------At4g35610--------->TOE1(2)                             --------- <---------ARR14(2)     <---------At4g35610  <---------At4g35610                            <-------- >HVH21------->TEIL --------->ARR11(3)       --------->At4g35610         --------->SPL7   <------NtERF2 --ZmHOX2a(2)       <---------ARR11(3)       <---------ZAT2            <-----------HVH21 ------>NtERF2 ------->LBD16      --------->ARR14(3)       --------->ZAT2           <---------ANAC58  --------->DEAR3(1) ----ARR14(2)       <---------ARR14(3)      ------->TEIL              <---------ANAC58 --------->DEAR3(2) --->ARR14(2)     <---------TOE1(2)       ---------->DOF2            <-------TEIL<---------ALFIN1<---   cccgagccgcatctcgttcggaggtcttctgctcctatggtcgatgaagctgggacatccaattggcaagatgcgtccgagcccctcatgccgacggtta  22525500                                               <---------ANAC58                                               <---------ANAC58                                           <---------ANAC58                                           <---------ANAC58                                         <---------ARR11(3)                                         --------->ARR11(3)                                         <---------ARR14(2)                  --------->At4g35610                                        <---------GLK1(1)                    <---------ZAT2                                        <---------RVE1(1)                    <---------At4g35610                                        --------->GLK1(1)                 ---------->DOF2     <------ZmHOX2a(1)                 <---------ARR11(3)              <---------HSFB2a(2) ------ZmHOX2a(2)                      --------->ARR14(2)              --------->HSFB2a(2)       ---- ------->ARR11(3)     ----------------->AGL1   <---------ANAC46        <---------HSFC1(1)     <------ZmHOX2a(1) -->GT1 <----------DOF2                <---------ARR14(2)              --------->HSFC1(1)    <------- -MYB46(3)           ------>NtERF2     --------->ARR11(3)          <----------DOF2    >>>>>>>>>TBF1 ------YAB1 <----------DOF2           <------ZmHOX2a(1)   --------->At4g35610--------->ZAT2 ---------   agatcgaggactttctttacttcggcccgaatgagacagaggatatcttgcgtcttaacgagcagaaggctttcgagaaagctgagaagaagaagaggaa  22525600                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 --------->ARR14(2)                                                                 --------->ARR11(3)                                     <---------YAB1              <---------ARR11(3)                               --------->LBD16                   <---------ARR14(2)                             <---------LBD16                     <---------AGP1               ---------->DOF2--------->LBD16                    <-----------ARR10             --------->At5g28300  <-------TEIL                  <---------CCA1(2) <------MYB46(1)      ---------->DOF2  --------->ARR14(2)         --------->ANAC58 ------>ZmHOX2a(2) ------>DOF2 <------NtERF2 ------>ZmHOX2a(1)      --------->ANAC58<------ZmHOX2a(2) ---ID1 --------->DAG2 <---------ARR14(2)     ------->TEIL      <---------ARR14(1)<------MYB83 -->GT1--------->DAG2  <-----------ARR10    --------->ZAT18  <---------LBD16     --------->MYB59   aaagaagaaaaaggcggtaatgccaaatcctcccggttcatcaatgtgtaccgagcaatctctctcggatcttaaggctcgatttggtcttggtgctgta  22525700                                         ------>ZmHOX2a(1)                                       ----------->RAV1(2)                                      ------>ZmHOX2a(1)                              <---------RAP2.6(3)                              ----------->RAV1(1)                              ------>NtERF2                              =====================RAV                             --------->RAP2.3(3)                             --------->DREB2C(2)                             --------->DEAR3(1)          <---------ANAC58   <---------ETT(1)          <---------ANAC58   ----------->HVH21                                                      =   <---------ANAC58         --------->RAP2.3(1)                                                     <   <---------ANAC58         --------->DEAR3(2)                               --------->ANAC46      <-   <---------ANAC46        <---------ATERF1(1)                <---------TOE2(1)           <---------YAB1   --------->ANAC55(2)     <---------At4g35610                <---------TOE1(1)<---------At4g35610 --   <---------ANAC55(1)     <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------SPL7   <---------LBD16<---------MYB46(3)   <---------ANAC55(2)     --------->At4g35610      --------->ZAT14 <---------GLK1(2)     <---------TOE2(3)   accttgcgtgttccgagccctgaagagcgagccgacagtcctcctgcaggtttctatactctgtacgagggattcttctacggctgtctcttatggttgc  22525800               ------>ZmHOX2a(1)               --------->LBD16               <---------HSFB2a(2)               --------->HSFB2a(2)               ================================HOX2a_HOX2a               ===============================HOX2a_HOX2a              <---------LBD16           ------>ZmHOX2a(2)          <------MYB46(1)  <---------bZIP60(1)          <------MYB83     --------->bZIP60(1)                                            <---------YAB1    --------->LBD16        <---------TGA2(1)          <------ZmHOX2a(2)               --------->ARR14(2)   --------->LBD16         --------->TGA2(1)         <---------ARR11(3)               <---------ARR14(2) =====================HOX2a_HOX2a      <------ZmHOX2a(2)                       --------->ZAT2 ------ZmHOX2a(2)       ----------->HVH21            --------->ARR11(3)     <---------At4g35610 --------ARR14(2)     --------->ANAC55(2)        <---------LBD16            --------->At4g35610 ------->ARR14(2)     <---------ANAC55(2)    <----------DOF2       <----------DOF2<---------LBD16   cgatcccgagattggtcctggaatatgtgacatcatatcagatcgctctttcccagatcacgatgcggtctttgagacatctgctcgggattttgattcg  22525900  Previous    Next  AGI:  At3g60930.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34590.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40133.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain DNA clamp (SSF55979) Range:  from: 22525390    to: 22527846    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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