Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <-----------GT1                                 <------NtERF2                           <---------WOX13(1)                 <--------ATHB1  <---------ZAT2                 --------->YAB1<---------ATERF1(2) --------->YAB1 --------->ICU4 --------->ATERF1(2) ------>TOE1(3) <---------ATHB12 --------->ZAT2                                   <---------------AtSPL8 ------>TOE2(3) <---------ATHB51------>NtERF2      ---------->DOF2       ---------->DOF2          <--   ccctaataatctacagcaataatagttcgattgccagcatggaatcactctcccaaagaatcaacagtgagagaagaaagagaatgggtacttacagttt  22484500                                                          --------->RAP2.3(1)                                                          <------NtERF2                                                         <---------ORA47(2)                                                         ------>NtERF2                                                         <---------RAP2.3(1)                                                         <---------ERF1                                                         <---------ATERF1(1)                                                         <---------DEAR4(2)                                                        <---------DEAR3(1)                                                        --------->DEAR3(1)                                                        <---------RAP2.3(2)                                                        --------->ATERF1(2)                                                        <---------RAP2.3(3)                                                        <---------ATERF1(2)                                                       <---------ABI4(1)                                                       <---------------------WRI1                                                       <---------LBD16                                                       --------->ATERF1(1)                                                      <---------RAP2.3(1)                   <--------                                                   --------->MYB52(1)                     -----------                                                   <---------ARR14(2)           --------->TOE1(2)           <---------ARR14(2)                      --------->ARR14(2)         <------ZmHOX2a(2)           --------->ARR14(2)                  --------->LBD16               --------->ARR14(2)<----- -------TOE2(3)       <---------TOE2(3)   <---------GLK1(1)                  <---------ARR14(2)------   atggattttggagtaatcgcgactaagaatactgtaaccagtagacatccgagtatcggcggcgataacacagtaatccgatccagcgatggccacacat  22484600                   --------->AHL20(2) <---------HSFB2a(2)<---------AHL20(2) --------->HSFB2a(2)--------->AHL20(2) -ALFIN1     --------->MYB52(1)        ----------->GT1 >RAV1(1) --------->ANAC58             --------->YAB1                          ---------->DOF2 --MYC3   --------->ANAC46   --------->At5g28300  ------->GAMYB         ---------->DOF2 ->MYC3   --------->ANAC58 --------->ZAT6   --------->ZAT6        --------->YAB1   gttctgaaaaacacacaacgattaaattcacagtaagtgaatcgtaacacaatcgcccagatagcaaatcagaataaagaagaaagacactaagcgaaga  22484700                                <---------ARR14(2)                                --------->SPL7                                ------->TEIL                                --------->ARR14(2)                              <---------SPL7                             <---------ANAC58                             <---------ANAC58                             <---------ANAC55(2)                            --------------->AtSPL8                            --------------->AtSPL3                            ================================HOX2a_HOX2a                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                                          --------->ARR14(2)              ---------->DOF2--------->ANAC55(2)                                     <------NtERF2         <-------TEIL      =================================HOX2a_HOX2a            <---------ANAC58        <--------P        --------->ARR14(2)                                  <---------ICU4    <-----------RAV1(2)   <---------ARR14(2)                             --------->ZAT14   --------->ZAT2       --------->ANAC58                         <---------ANAC58  <---------ANAC46   <---------ZAT2 <-----------HVH21--------->ANAC46  <------ZmHOX2a(1)<---------ANAC46<---------ARR14(2)   <---------At4g35610  --------->ANAC46       --------->YAB1    <---------ANAC58  <---------ANAC58 <-----------RAV1(2)    --------->ANAC58   <---------YAB1        <---------ANAC46 <---------LBD16----   aacccagcaggttgattaaaggtcacacgatccgtaccctccattgttatcgtaaggagaccagttcgcgtgctgtttagtcatggcggatttgagagag  22484800                                                                                         ------>ZmHOX2a(2)                                                                                        <------ZmHOX2a(2)                                                                                       <---------ARR14(2)                                                                                       <---------AGP1                                                                                       <---------ARR11(3)                                                                                       --------->ARR14(2)                                                                                       --------->ARR11(3)                                                 --------->LBD16                       <-----------ARR10                                                <---------ANAC46                      <---------CCA1(2)                                                <---------LBD16                   --------->GLK1(2)                                               <---------LBD16                    <---------ARR14(2)                                            <----------DOF2                       --------->ARR14(2)                                          --------->HSFC1(2)              <---------HSFC1(2)                                          --------->HSFB2a(1)             <---------HSFB2a(1)                                          <---------HSFC1(2)              --------->HSFC1(2)  <----------DOF2                   --------->At4g35610                   --------->HSFB2a(1) ------>DOF2            ----------->GT1  ------->TEIL               ---------->DOF2   <---------ARR14(1)   aaagctttgagctagggcttagaagaatgaaaaatggcagacgaagctttccgggtttgtgttttgatgtcaaagaaacttccgaatcggatcttattag  22484900                                                              <---------ANAC58                                                              --------->ANAC55(2)                                                              <---------ANAC58                                                              <---------ANAC46                                                             <---------LBD16              --------->ANAC58                              --------->MYB52(1)              --------->ANAC58                              <-----------GT1              *TSS---------->DOF2                   <-------PIF5    <----------DOF2                                 ------->PIF5             <----------DOF2   <---------ANAC58                ------------>CBF<---------ANAC46 --------->At5g28300  <----------DOF2   <---------ANAC58  --------->MYB52(1)     <---------MYB52(1)<---------ANAC55(2)<---------YAB1     <   ctctggctttgttaacaagaaaaagacggagactcaaaacaataccgttttggacgtggaaattacgggctgtaataggctttataatgggccttatttg  22485000                                                                                  <---------At4g35610                                                                                  <---------ZAT2                                        <<<<<<<<<TBF1                 ------->GAMYB                               <----------DOF2   *TSS                --------->ANAC58                        <------------------------ANAC81              --------->ANAC58          <-----          ---------->DOF2 <----------DOF2  <<<<<<<<<TBF1             --------->ANAC46--------->At4g35610 ----------DOF2    --------->GLK1(2) <<<<<<<<<TBF1        <-----------GT1         --------->At4g35610   ggctttgaattccaaagaaataatctttcttttcttttcttcttcttcttcgtcttcgattttctctctcaacgcaaactcgtaagctgcttccattttc  22485100  <---------HSFB2a(2)                   <----------DOF2                                             <  --------->HSFB2a(2)               <----------DOF2                                                 -  --------->HSFC1(1)             <---------MYB52(1)                                           <------ ------GT1 --------->ATHB12 <-----------GT1         --------->ZAT6        <-----------GT1     <------   ccttctagaccattgatttgttcttcgaaaaaaccgttctttcttttgcctctcactctagttccttctctcatttctacttctctagcttcactgactt  22485200                                                       --------->ALFIN1                                                       <---------ANAC58                                                       <---------ANAC46                  <---------------AGL15                <---------ANAC58     --------->ZAT6                                  --------->ALFIN1    --------->MYB46(3)                             <---------ANAC46                             <---- ---------At4g35610                                <---------ANAC58                <---------MYB46(3) -------->At4g35610    <---------LBD16             <---------ANAC58       --------->ANAC58   ------>NtERF2 ---ANAC58 --------->ARR11(3)             <---------TOE2(3)               --------->ANAC58 <---------ANAC58 ---ANAC58 <---------ARR11(3)             <---------TOE1(3)      <<<<<<<<<<<<<<<<<LFY      <---------ANAC58   gctgctaccactaaatcttggcatttgtggaaagttgggaatttagggtttttgggtgtgtgtgtgaaaacaatggaagcactagttgttgatgctggct  22485300                                                  --------->KAN4(2)                                                 <---------ICU4                                                <---------YAB1                                              --------->YAB1                 --------->At4g35610    ------>ZmHOX2a(1)                       --------->ATHB12        ---------->DOF2               ----------->RAV1(2)                      <---------YAB1  <-----      ------>ZmHOX2a(1)     ----------->HVH21<---------ATHB12               <---------MYB46(3) ------      --------->LBD16       ------>ZmHOX2a(1)--------->ICU4                <--------P          <-----  --------->ARR11(3)    <---------ARR14(2)   <---------YAB1              <---------MYB46(3)    ------ ------DOF2    <------ZmHOX2a(1)      --------->At4g35610                --------->ATHB12    <-------   ctaagttcctgaaagcaggagcagcaattcctgaccagtctcctgcaatgataattccctctcaaatgaaacgaatggttgatgatgggtcttcttcagc  22485400  Previous    Next  AGI:  At3g60820.1    Description:  PBF1 (20S proteasome beta subunit F1); peptidase. Identical to Proteasome subunit beta type-1 (PBF1) [Arabidopsis Thaliana] (GB:P42742;GB:P42741;GB:Q570C3;GB:Q6LAD2;GB:Q9SBI6); similar to PBC1 (20S proteasome beta subunit C1), peptidase [Arabidopsis thaliana] (TAIR:AT1G21720.1); similar to Proteasome subunit beta type-1 (20S proteasome alpha subunit F) (20S proteasome subunit beta-6) (GB:O82531); contains InterPro domain Proteasome, beta-type subunit, conserved site (InterPro:IPR016050); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) Range:  from: 22482744    to: 22484914    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g60830.1    Description:  ATARP7 (ACTIN-RELATED PROTEIN 7); structural constituent of cytoskeleton. similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G53750.1); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.1); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO40823.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) Range:  from: 22485049    to: 22487420    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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