Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <------NtERF2                                                                       ----------->RAV1(1)    -------                                                                       ------>NtERF2          <------                                                                      ----------->HVH21      <-------                                                                     --------->ATERF1(1)     <-------                                                                     <------NtERF2           --------                                                                     --------->RAP2.3(1)     --------                                                                    <---------ATERF1(1)      --------                                                                    <---------DEAR3(2)       <-------                                                                    ------>NtERF2  --------->ZAT14                                            ------>NtERF2           <---------RAP2.3(1)      --------                                           --------->DEAR3(1)      <---------At1g77200 --------->HSFB2a(2)                                          --------->MYB46(3)     <-----------HVH21 <---------ZAT14  -                                          --------->DEAR3(2) ------>ZmHOX2a(2)     --------->At4g35610                                         <---------At5g28300 ==========================HOX2a_HOX2a  <         --------->YAB1                 <-----------GT1    --------->ARR11(3)   <---------At4g35610 <  ------>ZmHOX2a(1)                  <---------ICU4        <---------ARR11(3)   ------>ZmHOX2a(1)   - --------->TOE2(3)           ------>ZmHOX2a(1)  <---------MYB52(1) <---------DEAR3(1)  <---------HSFB2a(2)   tctccttagaatcatgctcatcgtcttcttcctcttcaatttttaccgccgtttcgatttcgatcttcgtcggcgacatttcctctgctctagatgccat  22464300                                                                                       <---------DEAR3(1)                                                                                       --------->DEAR3(1)                                                                                    <---------ANAC46                                  <------NtERF2                                     <---------bZIP60(2)                                  ------>NtERF2                                     <---------bZIP60(1)                                  --------->LBD16                                   <---------TGA1a              ----------->GT1    --------->ANAC46                                   --------->O2         ---------->DOF2        --------->DEAR3(1)             --------->LBD16      --------->bZIP60(1)   ---------->DOF2              --------->MYB46(3)            --------->DREB2C(2)   <---------O2 -------->AGL15                 --------->SPL7                --------->DEAR3(1)    --------->TGA1a ---------AGL15                <---------ALFIN1               <---------ATERF1(2)  ----------->STF1 ----------AGL1                --------->ATERF1(1)            --------->ATERF1(2) <---------TGA2(2) ----------AGL3               ------>NtERF2                  <---------LBD16     ----------->HVH21 --------->AGL1             <---------LBD16                 --------->MYB52(1)   ----------->TGA1 --------->AG<---------------AtSPL8<------NtERF2           <---------ALFIN1     <-----------HVH21 --------->AGL3       --------->AHL20(2)                   --------->AtMYB61  ------>ZmHOX2a(2) ----------AGL2       <---------AHL20(2)                  <---------MYB55(2) <------ZmHOX2a(2) --------->AGL2  <-------TEIL--------->ANAC46             <---------ABI4(2) --------->ARR14(2) -------------->AGL15 --------->AHL20(1)            <---------ZAT14     <---------ANAC55(2) ---------------AGL15 <---------AHL20(1)            --------->ZAT14     --------->ANAC55(2) ---------HSFB2a(2)  --------->AHL20(2) --------->YAB1    --------->MYB46(3)<---------ARR14(2) -------->HSFB2a(2)  <---------ATHB12  *TSS         --------->REM1(2)<---------ATHB12  <---------ETT(2)   tactggaaagagaaaggggttcaataaattcccgcccgccgataatactctcagtgtagaaccaccggcaaatcacgagatcggtgacgtcgacgatgag  22464400                                                                                                <----                                                                                             <-------                        <------------CBF                           ------>MYB83       <------MYB83                       <---------AHL20(2)                     <-----------GT1        <---------TOE1(2)                       --------->ATHB12         <---------------AGL15                <---------AtMYB61                      <---------AHL20(1)        ------>ZmHOX2a(1)  ------>MYB46(1)  <---------MYB52(1)                      --------->AHL20(1)       <-----------------AGL2            <-------TEIL<-------                      --------->AHL20(2)      <-----------------AGL1         ------->TEIL    --------                      <---------AHL20(2)      <-----------------AGL3  ------>ZmHOX2a(1)    ----------                --------->YAB1                ----------------->AGL1 --------->TOE2(3)<------MYB46(1)   tttacatgttaaggcccatagtaatttattgggcctatatacccatgttcctattttgggcctataaccttcctcaatgtagcttcgttggtctagattt  22464500                                            <---------ANAC58                                            <---------ANAC58       <---------ANAC58                   <------MYB83       <---------ANAC58                   <------MYB46(1)      <---------MYB46(3)                <--------P                                                  -   <----------DOF2                    <------MYB46(1)                                              -- -------GT1                           <------MYB83                                           <------- --ARR11(3)                          --------->MYB111(1)     <----------DOF2           --------->ANAC58 --GLK1(2)         <-----------GT1   <---------AtMYB61  ------->TEIL   <---------ANAC46--------->ANAC58 ->ARR11(3)    --------->YAB1       <--------P         <---------GLK1(2)            <---------KAN4(2) ->ARR10    <----------DOF2   ----------------->AGL1   <---------CCA1(2)           --------->YAB1  --   tccatctttgggtgcttttataaaccggcttaaccagagttggtaggcttgatacttgaatctctttctggttttgtatattcaagaataagcaaacatt  22464600                                                                        --------->ARR14(2)                                                                        <---------ARR14(2)                                                                       --------->KAN4(1)                                                                       --------->GLK1(1)                                 --------->AHL20(2)      <---------AHL20(2)                         ------->TEIL            <-----------GT1      <---------KAN4(2)                      <---------ANAC58    --------->ARR11(3)        <------NtERF2                      <---------ANAC58    <---------AHL20(1)       --------->LBD16           <----------DOF2 --------->TOE2(3)    <-----------GT1   <---------ANAC46           <---------DAG2--------->SPL7   --------->AHL20(1)     <---------------------WRI1         -     --------->YAB1  --------------->AtSPL8    <---------AHL20(2)<---------LBD16                   -- ----->ZmHOX2a(1)    <---------------AtSPL3<---------CCA1(1) <---------ICU4                     ----- ------->TOE2(3)     ---------->ID1       <---------ARR11(3)--------->ICU4                    *TSS -- --ICU4 <-----------GT1<---------SPL7 ---------->DOF2------>ZmHOX2a(1)---------->TaMYB80  ----------- ------->TOE1(3)     --------------->AtSPL3<---------RVE1(1)<---------YAB1  ---------->DOF2  --------   tccttaaaaataactttttttttgtcgtacctcattttaaaaaagatattttatcctatttcattatggcggaatatccaaagaacaaaaaatggtagta  22464700                                                                                      --------->ICU4                                                                                  <-----------HVH21                                                            <-----------GT1      ------->GAMYB                                                      --------->ICU4       <------ZmHOX2a(2)                                                      <---------YAB1       --------->CCA1(2) -------->AHL20(2)                                 --------->WRKY18(1)    <---------ARR11(3) ------->AHL20(2)                      --------->TOE2(3)   --------->KAN4(2)  --------->MYB52(1) ---->YAB1                  <---------ZAT14       <--------ZAP1 <----------DOF2 --------->MYB46(3) ------->YAB1          <------ZmHOX2a(2)       --------->At4g35610        --------->ARR11(3) >GT1                <------ZmHOX2a(1) --------->TOE1(3)<---------ARR11(3)--------->AGP1 --->GT1 ---------->DOF2    --------->ZAT14    <---------At4g35610       --------->GLK1(1)    ------>ZmHOX2a(2)   ataaaaatagcgaaaggcatagaggatcactaaactcttagccttaatcagcggtcaagattataccttttagtgagatccaacggtcatatttgatcca  22464800                                            ----------->GT1       --------->AHL20(2)                      --------->CCA1(2)   <---------WOX13(1)   --------->YAB1          <---------ZAT6                --------->ATHB12  ------->GAMYB      <---------MYB52(1)           <---------YAB1        <---------ALFIN1   agttgtcccttagtgaaaacgaagagatggcgaaattttgtttgattggctaaaaatcaacacactgataaaataagagttgcagagagagtctctcatc  22464900                          --------->ANAC46                          <---------ALFIN1                   <---------ICU4                   --------->YAB1          <<<<<<<<<TBF1                       <---------ANAC58                --------->AtMYB61       <<<<<<<<<TBF1                          <---------ANAC46             <---------ALFIN1        <<<<<<<<<TBF1               ----------->GT1            --------->MYB46(3)    <<<<<<<<<TBF1          --------->YAB1        <---------ANAC58   ttcttcatttcttcaccaccatcatcacacaccttcttcttcttcttcttctctctctatcacaagagagtcaaatccatggcttctacttcttccctcg  22465000                                                            <-----------GT1                                                          <----------DOF2                                                         ------>ZmHOX2a(2)                                                       --------->ARR11(3)                                                       <---------AGP1                     ------->MYC3                      --------->ARR14(2)                     <-------MYC3                      <---------ARR14(2)                          <-                     <-------PIF5                      <---------ARR11(3)                         ---                     ------->PIF5                     <---------CCA1(2)                          ----                     ------->MYC2                   --------->ALFIN1                             ----                     <-------MYC2                  ------->MYC3                                  ----                 --------->STY1(2)                 <-------MYC3                                ------                 --------->ZAT2                   <---------ANAC46                             ------                 <---------ZAT2                   <---------O2                                 ------                 <---------STY1(2)                --------->O2            --------->ZAT14   <-------TEIL               ------>ZmHOX2a(1)                 ------>MYB83           <---------LBD16    <---------         <---------ARR11(3)                      ------>MYB46(1) --------->At4g35610  --------->MYB52(1)       --------->ANAC58                         --------->MYB52(1) <----------DOF2--------->ARR14(2)       --------->ANAC58<---------ZAT18        --------->MYB46(3) --------->ZAT2   <---------ARR14(2)   ctctctctcaagctctcctagctcgtgcaatctctcaccatggttctgaccaacgtggatctttaccagctttctctggactcaaatccaccggttcacg  22465100       <-------TEIL    <---------At4g35610    <---------ZAT2                                                          <---------ZAT2    --------->ZAT2                                                          <---------At4g35610    --------->At4g35610                                                     --------->At4g35610 -----NtERF2                                                                --------->ZAT2 --->NtERF2                                                               <-----------RAV1(2)     <-- ----->ANAC58                                     ------>ZmHOX2a(2)      <---------At4g35610      --- ----->ANAC46                                     =================HOX2a_HOX2a                    <-- ----->ANAC58         ------->TEIL               <------ZmHOX2a(2)   --------->ANAC46            ---- --->ANAC46     <---------DEAR3(1)               ==================HOX2a_HOX2a                   ---- --->ANAC58     --------->DEAR3(1)               XXXXXXXXXXXXXXXXXXXXX>MIR831           <-------GAMYB --->ANAC58     --------->ETT(2)          ---------->DOF2   ------>ZmHOX2a(1) <---------MYB46(3) ---- --HVH21     <---------ANAC46       <---------WRKY18(1)xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      ------   cgcctcagcttcgtctcgtcgacgtatcgctcaatccatgaccaaaaaccgatctctccgtcctcttgttcgcgctgcagctgttgagactgttgagcca  22465200  Previous    Next  AGI:  At3g60740.1    Description:  TTN1 (TITAN 1). similar to tubulin folding cofactor D, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47868.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24519.1); similar to putative tubulin-folding cofactor [Oryza sativa (japonica cultivar-group)] (GB:AAM94921.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain HEAT (InterPro:IPR000357) Range:  from: 22458220    to: 22464339    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g60750.1    Description:  transketolase, putative. similar to transketolase, putative [Arabidopsis thaliana] (TAIR:AT2G45290.1); similar to unknown [Populus trichocarpa] (GB:ABK95795.1); similar to Transketolase, chloroplast precursor (TK) (GB:Q43848); similar to unknown [Populus trichocarpa] (GB:ABK92500.1); contains InterPro domain Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II; (InterPro:IPR009014); contains InterPro domain Transketolase C-terminal-like; (InterPro:IPR015941); contains InterPro domain Transketolase, N-terminal (InterPro:IPR005474); contains InterPro domain Transketolase, central region (InterPro:IPR005475); contains InterPro Range:  from: 22464694    to: 22468127    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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