Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->LBD16                                                                                    <---------HSFB2a(2)                                                                                    --------->HSFB2a(2)                                                                                  <------NtERF2                                                                                 ------>NtERF2                                                                                --------->ARR14(2)                                                                                <---------ARR14(2)                                                                               <---------At4g35610                                                                               <------NtERF2                                                                               --------->ATERF1(1)                                                                               --------->At4g35610                                                                              <---------RAP2.3(1)                                                                              <---------ATERF1(1)                                                                              <---------DEAR3(2)                                                                              ------>NtERF2  <-----------HVH21                                                          <---------DEAR3(1) -------ALFIN1                                                               <---------RAP2.3(3) ------>AtMYB61         <-------GAMYB        <---------ANAC58               --------->ATERF1(1) ----->MYB46(3)        --------->MYB55(2)    <---------ANAC46              <-----------HVH21 ------ABI4(2)         <---------MYB46(3)    <---------ANAC58             --------->TGA1a ---->TCP16(2)        <---------AtMYB61---------->DOF2                    --------->O2 ----TCP16(1)      --------->ALFIN1    =============================================bZIP_DOF ----PCF5        <---------ANAC46    --------->ANAC58                     <---------O2      >>>>>>>>> --->PCF2        <---------ANAC58    --------->ANAC58                     =========================== >RAV1(2)        <---------ANAC58  --------->CCA1(2)                      <---------TGA1a --------->MYB46(3)   ccaccgtgagaagaagacagcgtggtggttgaagaagagacgaaagggcttggacttctaacagagtctaaaacagacgtcggctccgagaaaccaccat  22423200                  ------>ZmHOX2a(2)                 <------ZmHOX2a(2)                <---------ARR14(3)                --------->ARR14(2)                                     --------->LBD16                --------->AGP1                                        --------->LBD16                --------->ARR14(3)                                   <---------LBD16                --------->ARR11(3)                                <---------ARR14(2)                <---------ARR14(2)                         --------->ARR11(3)                <---------ARR11(3)                         --------->ARR14(2)               <---------GLK1(1)                           <---------ARR11(3)               --------->GLK1(1)                           <---------ARR14(2)             --------->ANAC46       ---------->DOF2                                   ----------->ARR10       >>>>>>>>>TBF1      - >>>>>>>>LFY  ----------->ARR10              <---------LBD16     <---------CCA1(2)   --------->GLK1(2) =================bZIP_DOF             <---------At4g35610 <---------GLK1(2)  >>>>>>>>>TBF1         <   tgttgacaacaaagcagagatcttcttctactcgtccatggagcttctctggattagcccagattttgtatcccggagaagaagaagaatctaagaaacc  22423300                                            ------>MYB83                                            ------>MYB46(1)                                      ----------->HVH21                                 <-------PIF5                                 ------->PIF5                                --------->At4g35610                                <------NtERF2<---------ATHB12 -------->ARR14(2)            <-----------RAV1(2)                 --------->GLK1(2)         --------- ---------ARR14(2)      ---------->DOF2<---------WRKY18(1) ---------->DOF2        ---------->DOF2   cagaacccccttcccttgaaattgctcaaagggcaggggcatgaccaatcttacagagtcagaaagagaatttaagagtgagaacaaagaaacccagaaa  22423400                                                                   <---------ARR11(3)                                                             <---------ALFIN1                                                             ----------->RAV1(1)                 ---------->DOF2                            --------->DEAR3(1)       =======================HOX2a_HOX2a                   --------->RAP2.3(3)      <------ZmHOX2a(2)                                    <------NtERF2      <---------GLK1(1)                                    --------->ATERF1(1)      ========================HOX2a_HOX2a                 <---------RAP2.3(1)     <---------AGP1                                       <---------ZAT18     --------->ARR11(3)                                   ------>NtERF2                --------->YAB1     <---------ARR11(3)                                   <---------ATERF1(1)       --------->YAB1    <---------CCA1(2)  <------ZmHOX2a(1)       <-----------------AGL3    <---------ALFIN1  --------->GLK1(2) >LBD16------>ZmHOX2a(2)            ---------->DOF2       --------->PCF2 --------->ZAT6<-----------GT1   aaccctagatctcagaacttaaagaggaagacgaagatgaaagcttgaaactgaaattggcgcccacattatctcacactcggtattaataacaatcttt  22423500                                     --------->MYB46(3)                                            --                             --------->HSFB2a(1)                                                   <-              ------->TEIL   <---------HSFB2a(1)         ------>ZmHOX2a(2)                        <--       <---------ANAC46      --------->HSFC1(2)        --------->ARR11(3)                       <----       <---------ANAC58      <---------HSFC1(2)        <---------ARR11(3)          *TSS       -------       <---------ANAC58<---------LBD16        ---------->DOF2               <----------DOF2   -------   cttctcgttgcttatgtatattgactctggatgattccaacaacattccaaagtgatgatcttcataaaaaatgctctcttttttttttttttaagtaaa  22423600                          <---------ANAC58                          <---------ANAC46                          <---------ANAC58                        ------>NtERF2                     <---------ANAC58   <------MYB46(1)   <---------ANAC58   <------MYB83     <---------AtMYB61 ------->ARR14(2)   --------->ALFIN1 --------ARR14(2)  <---------ZAT14                                    <-----------GT1               < ----ZmHOX2a(1)   --------->ALFIN1                  --------->REM1(1)<---------CCA1(2)       -------- -----TOE2(3) <---------ANAC46              --------->ANAC55(2)   <---------AHL20(2)         -------- --->DOF2     --------->ALFIN1            <-----------GT1--------->ZAT14              --------->ZAT6- -->MYB52(1)<---------ANAC46              <---------AHL20(2)     --------->AHL20(2) <-----------GT1--   ggatttggtttttgctgtgtgtgtggtgccttgtgtctgtagatttacttatctacatctgtactcattttatatcccctcgtttctaaccctactcgca  22423700       <-----------HVH21      --------->ANAC58      --------->bZIP60(2)      <------NtERF2      --------->ANAC58     ------>NtERF2    <---------ANAC46  <---------RAP2.3(1) --------->ANAC46 <---------RAP2.3(3)                 --------->AHL20(2)                                         ----- <---------RAP2.3(2)              --------->YAB1                                                ----- ---------At5g28300           --------->ATHB12                                         <---------AHL20(2) ->ANAC58                    <---------YAB1           --------->AtLEC2                 <---------AHL20(1) ->ANAC58                    <------ZmHOX2a(2)   --------->ANAC46                      --------->AHL20(2) -------->SPL7              <---------ARR11(3)   --------->ANAC58                      --------->AHL20(1) ------->MYB52(1)           --------->ARR11(3)   --------->ANAC58   ---------->DOF2   --------->AHL20(2)   cttacggcgcgtcactcttactctccaagagatcattgattatataagtttaagccatgaaaatcgaaatcaaagtgtcattaatcgaataaatttagcc  22423800                                                                                                   <-                                                                                          --------->AHL20(2)                                                                                      --------->AHL20(2)                                             <------ZmHOX2a(1)                        --------->AHL20(1)     <---------AHL20(2)               <---------AHL20(2)                              <---------AHL20(2)     --------->AHL20(2)              --------->AHL20(2)                    --------->ANAC58        --  --------->YAB1              ----------->RAV1(1)                          --------->ANAC58<---------AHL20(2) <---------ATHB12         <---------YAB1   <---------TOE2(3)  <------ZmHOX2a(1)       <---------AHL20(1) ---->TOE2(3)           --------->YAB1--------->AHL20(2)     ----------->GT1         --------->AHL20(2) ---->TOE1(3)          <---------YAB1<---------------AGL15  <---------TOE2(3)        <---------ATHB12   ttaatcataaattgactaaattactatgatgacaacataataaataaggaaaacactggattgaggaaaaaaaaaacaaggaaaccaataaattttatgc  22423900                                                                             ----------->GT1                                                                         --------->AHL20(1)                                                                         <---------AHL20(2)            <---------YAB1                                              <---------AHL20(2)          <-----------GT1                                               --------->AHL20(2) <----------ID1                                                        <---------AHL20(1) <---------ETT(2)                                                ----------->GT1 --------ARR14(2)          ----------->GT1                   ------->TEIL--------->AHL20(2) ------->ARR14(2)          <---------ANAC46     --------->AHL20(2)    --------->YAB1 ----------->GT1   atatcgacaaaattactattctacatttttcgtaaattttgttcgatttataaaataaacttgcatcttgtaaaataatttgttatttagtgaaatagca  22424000                      ----------->GT1            <---------AHL20(1)            --------->AHL20(1)                                                                     <-        <---------AHL20(2)                                                                       <---       --------->AHL20(2)                           ----------->GT1                             ----- ----------->GT1    --------->ZAT14              --------->YAB1                               <<<<<<< <---------ANAC58   <---------ZAT14             <---------YAB1        --------->AHL20(2)    <-------- <---------ANAC58   --------->ZAT18     <---------AHL20(2)    <-----------GT1               <<<<<<<<<WRKY18 <---------ANAC46   <---------ZAT18    --------->AHL20(2) --------->AHL20(2)               --------->WRKY18(1)   attgggtgatttaatatatatgtgcagtaacatgttttatattaaatagtatgatagtaaaaatatacttcattatatatgtataaaaactaagtcaagg  22424100  Previous    Next  AGI:  At3g60630.1    Description:  scarecrow transcription factor family protein. similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G45160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24542.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 22421340    to: 22423583    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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