Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                 ----                                                                                               ------                                                                                              <------    <---------DAG2     <---------ZAT18                                                       --------    <----------DOF2    --------->ZAT18                                                       <------- ------------>AtSPL8  <---------ANAC46     ------>ZmHOX2a(1)     --------->YAB1             --------- >TOE1(3)       --------->DAG2            --------->TOE2(3)      <-----------GT1           --------->ICU4 >TOE2(2)      ---------->DOF2 <---------TOE2(3)        ---------->DOF2                    <---------YAB1 >TOE2(3)   --------->YAB1    --------->YAB1          ------->GAMYB                      <---------ICU4 >TOE1(2)<----------DOF2      --------->MYB52(1)<---------ARR11(3)   --------->ANAC46    --------->YAB1   cttgtacttttctttgataaagttgtggacaataacgatttcatcctcaatatcaaccgaaagcttattacaatccacaataagcttatactcatgatca  22415600  <---------ARR11(3)  <-----------ARR10  --------->GLK1(2)                           <---------ARR11(3)                                <---- <---------GLK1(2)                            --------->ARR11(3)                                <---- ------>YAB1                                 <---------CCA1(2)                                  ----- ----->At4g35610                           --------->YAB1                               --------->YAB1 --->YAB1                               --------->YAB1                               --------->YAB1 ---YAB1                               <---------YAB1                    --------->ZAT6<---------YAB1 ->ARR11(3)                           --------->ARR11(3)  <---------At4g35610       <------ZmHOX2a(2) --ARR11(3)               <----------DOF2 <---------YAB1  ----------->RAV1(2)      --------->ARR11(3) >YAB1               ------>ZmHOX2a(1)<---------ARR11(3)  --------->At4g35610      <---------ARR11(3)   tcagaatctttcccaagagcctcctctactttgtgcataatatcatcatatctctgagtcttctgaagcttagaaacactatcgagatcatcatagttaa  22415700                      --------->ARR14(2)                      <---------ARR14(2)                     <---------CCA1(2)           ------>NtERF2           --------->LBD16          --------->ANAC46          --------->ANAC58          --------->ANAC58       --------->ARR14(2)                                                             <---------At4g35610       <---------ARR14(2)   <---------ARR11(3)            <---------GLK1(2)           --------->At4g35610 -----ANAC55(1) --------->ARR14(2)              --------->REM1(1)         --------->At4g35610 -----ANAC55(2) <---------ARR14(2)       <----------DOF2<---------YAB1    <---------At4g35610       < ---->ANAC55(2)<---------CCA1(2)      ------>ZmHOX2a(1) --------->ICU4--------->ARR14(2)      <------   gtgtctctaaatccgccatatccatatccacatcttcttcctcctttccaacatcaccatgattctcgtccaattctgcttcattctcagataactcgtc  22415800               <---------ARR14(2)               --------->GLK1(2)               --------->ARR14(2)               <---------ARR11(3)               --------->ARR11(3)          ---------->DOF2       --------->ANAC58       --------->ANAC58          <---------ARR11(1)                                           -------    <---------At4g35610          <---------ARR14(2)                           --------->ARR14(2)    <---------ZAT2               <-----------ARR10                            <---------ARR14(2)   --------->ANAC58              <---------ARR11(3)               <XXXXXXXXXXXXXXXXXXXXMIR3440B-3P   --------->ANAC58              --------->ARR11(3)              <---------GLK1(2)          <-------- -----------HVH21                --------->ARR14(2)        <---------ZAT14    --------->GLK1(2) <---- -----HVH21   <---------GLK1(2) <---------CCA1(2)          --------->ZAT14    ------->TEIL--------->GLK1(1)   aaggtcagcaaggaaagaatcttcaagagttgccatatctttctacttggaacacaaacgcttcagtgattctcttgacgaatccaaatgagaaatcaat  22415900               <---------YAB1               --------->YAB1              --------->ARR11(3)   ------>MYB83        <---------HSFC1(1)         ------>MYB46(1)        --------->HSFB2a(2)      --------->DREB2C(2)      <-------TEIL               ------->GAMYB     --------->CCA1(2)       --------->MYB46(3)    --------->ARR11(1)       ----------->HVH21    <---------GLK1(2)        --------->DEAR3(1)  ----------->ARR10          <---------MYB52(2)                             <-----------GT1 -->WOX13(1)  <---------ARR11(3)--------->DEAR3(2)               <---------TOE2(3)         <-------MYC3 -ATHB12<---------HSFB2a(2) --------->At4g35610                  <---------TOE1(3)         ------->MYC3 -----ATHB12----------->GT1 <---------At4g35610 <-----------GT1  --------->MYB59<----------DOF2   cgattagattcgagaagataattgaagagcagcgaccgactactatttataaactctctcatgtgtttaggtttcaagtttccttttttcacatgtgttt  22416000                        --------->DAG2                       *TSS                   <----------DOF2                       ---------->DOF2    <-----------GT1   <---------DEAR3(2)            <----------DOF2        ----------->GT1        ---------->ID1                         <---           --------->TOE2(3)       <---------ZAT6   <-----------GT1                              ----   gggattcaaatttcctttaaacaaaaaaagttaactcgtgttaatttccttttttcacttgtcggtttatttgacaactactaaaccatcaaaaactaat  22416100                               --------->ANAC55(2)                               --------->ANAC46                               --------->ANAC58                               <---------TGA1a                               --------->O2                               --------->ANAC58                               --------->TGA1a                               <---------O2                               <---------bZIP60(2)                               <---------ANAC55(2)                            <---------MYB52(1)                           <-----------HVH21                           <-----------TGA1                          --------->ANAC46                                            <---------YAB1                          ------->GAMYB                                            <---------ARR14(2)                          ===============MYC_MYB      --------->ATHB12             --------->ARR14(2)                         ================MYC_MYB      <---------AHL20(2)          <------ZmHOX2a(1)                       --------->MYB52(1)            --------->AHL20(2)         <---------TOE2(3)  <-                    <---------ANAC55(2)           --------------->AGL15       ---------->DOF2 <------       --------->AHL20(2)<------------AtMYB77  --------->ANAC58            --------->ANAC46  <-------       <---------AHL20(2)--------->MYB46(3)    --------->ANAC58           ------>NtERF2     <-------- ------AHL20(2)     --------->ANAC55(2)        --------->ANAC46           --------->LBD16   <-------- ----->AHL20(2)   <-----------GT1        ------>ZmHOX2a(1)              <---------LBD16 >>>>>>>>>ARR2   taaacaaatttaaattttagttacttaaccgtcacgtagcatcctctgttcgccatttattgaattctagtttctccgcgtaaaggatttgattgtggtt  22416200                                                                        -------->HAHB4  <---------DAG2                                                        --------->YAB1  <----------DOF2                                  <---------ANAC58    --------->ICU4 ----------GT1                                     <---------ANAC58    <---------YAB1 -GAMYB                                   --------->TOE2(3) --------->ANAC58 --MYB46(3)          <---------ZAT6       <----------DOF2   --------->ANAC58 -TOE2(3) <----------DOF2       --------->YAB1     <---------ANAC46  --------->YAB1 -YAB1 <-----------GT1       <----------DOF2<---------AHL20(2)    ----------->GT1   gtaactttttttctttgtagatagtgttaggctttgatcatcttctttaatgggcgtatagaacgtaagtgtaataatagtttttgttcattgttttctt  22416300                         <---------bZIP60(1)                         --------->bZIP60(1)                       <-----------GT1                    <---------ICU4                   --------->ICU4                         <---------YAB1         <---------RVE1(1)                 --------->YAB1              <---------WOX13(1)           --------->YAB1 <-----------                <-------TEIL               --------->ATHB12     <---------TOE2(3)<---------CCA1(1)            <---------ATHB12              --------->AHL20(2)    <---------YAB1  <---------ARR11(3)           --------->ANAC58               <---------AHL20(2)   --------->YAB1   --------->ARR11(3)           --------->ANAC58            <------ZmHOX2a(1)<---------CCA1(2)--------->ICU4  ------------   ctgcaattttctcaagcattcattatcacatcatgaagagaggattaattgatgactcatatcattaagaatgaaatgatcagatatttttcaagtactt  22416400                                                                                         <----------DOF2                                                                                      <---------ARR11(3)                                                                                      --------->ARR11(3)       <---------TOE2(3)                                    --------->At4g35610    --------->AHL20(2)     <---------ICU4                                      <------ZmHOX2a(2)     ----------->GT1     <---------AHL20(2)                                 --------->ARR11(3)   ---------->DOF2 --------->AHL20(2)                                     <---------ARR11(3)--------->ANAC58         -- ----AtSPL3   <---------WOX13(1)                    ---------->DOF2       --------->ANAC58         <- --->AtSPL8<---------YAB1                       --------->ZAT6       ---------->DOF2 <---------CCA1(2)   caactaattaatgctgatttacatagatactatatcgcctctacttctgatcactaaagatcagaagaccaaaaagaagcaaagtttaaatctttttctt  22416500  Previous    Next  AGI:  At3g60610.1    Description:  pseudogene, putative pre-mRNA processing ribonucleoprotein, similar to U4/U6 snRNP-associated 61 kDa protein (Homo sapiens) GI:18249847; contains Pfam profile PF01798: Putative snoRNA binding domain; blastp match of 63% identity and 1.9e-143 P-value to GP|24059931|dbj|BAC21394.1||AP004010 putative U4/U6 snRNP-associated 61 kDa protein {Oryza sativa (japonica cultivar-group)} Range:  from: 22414212    to: 22416023    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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