Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            ------>MYB46(1)                                                                                          ------>MYB83                                                                                         ----------->RAV1(1)                                                                                     <-----------GT1                                                                              --------->ANAC58                                                                              --------->ANAC58          --------->TGA1a                        --------->REM1(1)          ---------->DOF2   -------  <------ZmHOX2a(2)                            ----------->RAV1(1)      ---------->DOF2 ------->GAMYB --------->ARR14(2)                        --------->ANAC46         --------->At4g35610--------->MYB46(3) <---------ARR14(2)             --------->ARR14(2)                --------->YAB1   <---------MYB52(2) --->MYB46(3)        --------->ZAT14  --------->ARR14(2)     --------->AHL20(2)  --------->WOX13(1)   tccgatccactcacatcagacccttcactatcagtttccgattccactgcaacaccaaaaaaaaaaaatcatcagaaagaaagcaattaaccaacaaaaa  22282700                                                                        <----------DOF2                                      <---------At4g35610              ------>ZmHOX2a(2)                                      --------->At4g35610             <------ZmHOX2a(2)                                      --------->ZAT2                 --------->ARR14(2)                           >>>>>>>>>>MYB80                           --------->ARR11(3)                        <---------MYB52(2)                           <---------ARR11(3)                     <------ZmHOX2a(1)<---------ZAT2                 <---------ARR14(2)                     <----------ID1<------ZmHOX2a(1)            --------->DAG2       ----------->GT1  --------->MYB46(3)                     ---------->DOF2 --->DOF2    ---------->DOF2--------->MYB46(3)          ----------->HVH21     <----------DOF2   gactcacagatgtgaaaaagagaggaacaaaccatcaggaagctgagttttagtagatgtgaaggaaaagggatctttgtctttagaagagaaaacccta  22282800                                                                                               ------                                                                                          ===========                                                                                        --------->ARR11(3)                                                                                   ==================                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                                                                                  --------->GLK1(1)                                                                                  <---------GLK1(1)                                                                                 <---------AGP1------                                                                                 --------->ARR11(3)                                                                                 <---------ARR11(3)                                          <---------ZAT14                        --------->GLK1(2)                                    XXXXXXXXXXXXXXXXXXXX>MIR397A                 <---------ARR14(3) <                    --------->GLK1(1)     --------->ZAT18      <------ZmHOX2a(2) --------->ARR14(2) -     <---------MYB46(3)             XXXXXXXXXXXXXXXXXXXX>MIR397B                 <---------ARR14(2)--    --------->ALFIN1<---------GLK1(1)  <---------ANAC46        <---------ATHB12 <------ZmHOX2a(1)----    <---------AtMYB61              --------------------->WRI1  ========================HOX2a_HOX2a <-    <---------DEAR3(1)           <---------YAB1 <---------MYB52(1)       <---------ALFIN1 ------>ZmHOX2a(2) --------->ALFIN1  --------->ARR11(3)  <---------ANAC58  --------->ARR14(2)     =================HOX2a_HOX2a <---------AtMYB61 <---------ARR11(3)  <---------ANAC58  <---------ARR14(2) --------->DEAR3(1) ------   gatgtggtggtggaagttgaagatttctctagtttcttattgagtgcatcgttgattcgtttccgatcaatagctccaccgaggatctctgatctcgatg  22282900         --------->AtMYB61         <---------ALFIN1      <---------ALFIN1      --------->AtMYB61      --------->DEAR3(1)     --------->MYB46(3)   --------->AtMYB61   --------->DEAR3(1)   <---------ALFIN1  <---------MYB55(2)  --------->MYB46(3) ------>MYB46(1) ------>MYB83 ----->HVH21 ===================HOX2a_HOX2a ===================HOX2a_HOX2a                                                          <-----------HVH21 --->WRKY12               --------------->AtSPL8                 >>>>>>>>>CBP60g    ---------->DOF2 ---------ALFIN1         <---------ANAC46                        >>>>>>>>>SARD1  <---------HSFC1(1) -------->ANAC46         <---------ANAC58                     <---------ARR11(3) --------->HSFB2a(2) ------->MYB46(3)        <---------ANAC58                   --------->ANAC58     <---------HSFB2a(2) ----->PCF2  ------>ZmHOX2a(1)                              --------->ANAC58  --------->GLK1(2) --------MYB55(2)       --------->MYB52(2)             <----------ID1        <---------GLK1(2) --->WRKY38(1) <---------ALFIN1                      ---------->DOF2       ----------->ARR10    <----   acccaccaccacctcctccactacgttccttgtacataattcgattccttctccaaaaagacaagaaatttggagattagattctcgaaagtgtcagact  22283000                                                                                 --------->AHL20(2)                                                                                 --------->AHL20(1)                                                                        <---------AHL20(2)                                                                       --------->AHL20(2)                                                                       <---------AHL20(1)  --------->AHL20(2)                                                                       <---------AHL20(2)  <---------AHL20(2)                                                                   <---------AHL20(2)   *TSS     ----                                                                  --------->AHL20(2) <---------AHL20(2)                    ----------->GT1                               <---------AHL20(2) --------->AHL20(2)       <---------ANAC58                                          --------->YAB1  <---------AHL20(2)       <---------ANAC58                 --------->GLK1(1)    <---------AHL20(2) <---------AHL20(2)     --------->GLK1(2)             ----------->GT1           --------->AHL20(2) --------->AHL20(2) ------DOF2      ---------->DOF2--------->CCA1(2)        <----------DOF2--------->AHL20(2)<----------   ttctgagaagcttgagagagaaaggaaattagagagacggagaaatctagggttttcttctttttaattttaatttttttaaaaaaattatatataattt  22283100                                                                              <----------DOF2                  <------ZmHOX2a(1)                                          <---------ANAC58                 --------->ANAC58                                            <---------ANAC58        --------->ALFIN1                      <----------DOF2               <------------------------ANAC81 ----->MYB59     --------->ANAC58 --------->ICU4                   ---------->ID1             <------ -------AGL3 <------ZmHOX2a(1)  ---------->DOF2      ------>ZmHOX2a(1)     <-----------GT1 ----------   tggtaacagagtggaggacaggacataggcgatgtaaagatggtctctctttctcctctcaactgttttgtttttttttgctttccagtttttgttcttt  22283200                               <---------ZAT6                           <---------ANAC58                           <---------ANAC58                   --------->ATHB51                   --------->ATHB12                   <------------ATHB5                  <---------YAB1                                                                   --                --------------->AGL15                       <---------ANAC46                     ----                --------->HSFB2a(2) <---------At4g35610     <---------ANAC58                     <---                <---------------AGL15           --------->ZAT14 <---------ANAC58               ------   <-----------GT1<---------AHL20(2)--------->At4g35610     <---------ANAC58 --------->MYB46(3)<----- ----DOF2      <-----------------AGL2           <---------ZAT14 <---------ANAC58 --------->AtMYB61--- >ID1          <-----------------AGL3  ---------->DOF2<---------YAB1   --------->YAB1       <--------   ctattttacaatgggcttctataattgggccttgtgttagctaaagtcagtttagtctcattgcttgcttccatcagaaacgaccaaaacagatgggcca  22283300                                              ------>MYB46(1)                                              ------>MYB83                                              -------->P--------------->AGL15                                            --------->AtMYB61  ----------->RAV1(1)                       ------->GAMYB <---------ZAT18                           <---------MYB55(2) ------->ANAC46                            --------->MYB46(3) ----->MYB46(3)                            <---------MYB52(2) ------ALFIN1                             --------->ANAC58 ----->RAV1(1)                            --------->ANAC58                <-------TEIL ----ALFIN1   --------->GLK1(1)    --------->YAB1       <---------------AGL15 ------>DEAR3(1)  --------->TOE2(3)<---------ICU4      <-----------------AGL2   <-------TEIL -PCF5        <---------GLK1(1)--------->MYB46(3)      <---------YAB1 <---------------AtSPL8      ---   cagcccacataagatgaaatccataaatcgtgaacaaacatgacaaccaacaagattacgatttttggaattagagtacatatacatgttggaacttgga  22283400                --------->ZAT2                <---------ZAT2            --------->ANAC46                    --------->AHL20(2)           --------->At4g35610                  <---------ICU4           <---------At4g35610                  --------->YAB1          --------->MYB52(1)                 --------->YAB1         <---------WRKY38(1)                 <---------ICU4       <------ZmHOX2a(1)         <---------WRKY12       --------->ARR11(3)              <---------TOE2(3)         <---------WRKY45       <---------ARR11(3)              <---------TOE1(3)        --------->WRKY18(1) ---------->DOF2 <---------YAB1  --------->TOE2(3)       <-----------HVH21----------->HVH21   --------->ICU4 <---------ICU4 <-------TEIL------->GAMYB<<<<<<<GRF7     --------->YAB1  --------->ICU4   --------->AHL20(2) ------>At4g35610    <---------AGP1 <---------LBD16  ----------->GT1       <---------AHL20(2)   agatgcattggtcaacggagctagacctgacaaaggtcttcggataataataatatcgtaaacattaaggaaactttttaattttaaaaaatcggacatg  22283500                                                                                     --------->ANAC58                                                                                     --------->ANAC46                                                                                     --------->ANAC58                                                                                  <---------ZAT14                                                                                  --------->ZAT14                                                                              --------->ALFIN1                                                                              <---------DEAR3(1)                                                                              <------NtERF2                                                                            <---------ANAC46                                                                            <---------ANAC58                                                                            <---------bZIP60(2)                                                                            <---------ANAC58                                                                            <---------O2                                                                         <---------DEAR3(1)                                                                      <---------AtMYB61                                                           <-------TEIL ----------------------->TaNAC69(2)             --------->ZAT6   <---------ZAT6              --------->CCA1(2)<------NtERF2    --------->ANAC58    <---------ARR11(3)      <---------GLK1(2)     <-----------RAV1(1)    --------->ANAC58    --------->GLK1(2)    --------->HSFB2a(2)  <---------ANAC58--------->ZAT18 --------->ZAT18        --------->ARR11(3)   <---------HSFB2a(2)  <---------ANAC58<---------ZAT18   aagagcacgaattgaactctatacaaaatctagagttgaatcgtgtttcagaaactgaaggtacacgagcttgtggtggcgtggtgcacgactctgcata  22283600  Previous    Next  AGI:  At3g60250.1    Description:  CKB3 (casein kinase II beta chain 3); protein kinase CK2 regulator. Identical to Casein kinase II subunit beta-3 (CKB3) [Arabidopsis Thaliana] (GB:O81275); similar to CKB4 (CASEIN KINASE II BETA SUBUNIT 4), protein kinase CK2/ protein kinase CK2 regulator [Arabidopsis thaliana] (TAIR:AT2G44680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70487.1); contains InterPro domain Casein kinase II, regulatory subunit, beta-sheet; (InterPro:IPR016150); contains InterPro domain Casein kinase II, regulatory subunit, alpha-helical; (InterPro:IPR016149); contains InterPro domain Casein kinase II, regulatory subunit; (InterPro:IPR000704) Range:  from: 22281312    to: 22283088    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version