Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                                                       --------->MYB46(3)                                                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <-------TEIL                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <xxxxxxxxxxxxxxxxsmallRNA(i)                  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <---------GLK1(2)                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              ----------->HVH21             <xxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxsmallRNA(si3)            <------NtERF2                  <xxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            --------->At4g35610           <xxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------At4g35610           <xxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            ----------->RAV1(2)           <xxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           ------>NtERF2           <------NtERF2                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <-----------HVH21         --------->LBD16                 <xxxxxxxxxxxxxxxxsmallRNA(se3)       --------->ANAC46  <xxxxxxxxxxxxxxxxsmallRNA(s)             <xxxxxxxxxxxxxxxxsmallRNA(s)       <---------ANAC55(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ANAC58               <------      <-------TEIL  <---------ARR14(2) --------->GLK1(1)       --------->ANAC46          <----------DOF2 --------->AHL20(2) --------->ARR14(2) <---------GLK1(1)       --------->ANAC58  ---------->DOF2 <---------AHL20(2) --------->ARR11(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxsmallRNA(se3) ------AHL20(2) <<<<<<<GRF7     <---------LBD16           <------ZmHOX2a(1)<xxxxxxxxxxxxxxxxxsmallRNA(fl3) ----->AHL20(2)--------->MYB52(1)<---------ANAC46------->TEIL<---------ALFIN1 ------>NtERF2 *TSS   aaaataaatacgtcgcctgacagattcgaactctcgcggggaaaccccatgtacttagcaggaacacgccttaaccactcggccaaagcgacttttgatg  22197900                   --------->AHL20(2)               <---------CCA1(1)               <---------RVE1(1)              --------->ARR11(3)     --------->ANAC58                                           <---------CCA1(2)     --------->ANAC55(2)                                 <---------ZAT18     --------->ANAC46                                    --------->ZAT18     --------->ANAC58                                   ------->GAMYB     --------->ANAC55(1)                               --------->MYB46(3)                         <-- <-----------GT1   <---------AHL20(2)                 <---------At4g35610              --------->TOE2(2) ---TOE2(3)   <---------ARR11(3)<----------DOF2       --------->At4g35610              --------->TOE1(2)   tttttacacgttattagatatttaaatgtgactactttgctatacatttgtttgtcaactgccctcatatatcaaagattagaatacatcatacgagatt  22198000                                          <-------TEIL                                         --------->ARR14(1)                                        <---------GLK1(2)                                        --------->ARR11(1)                       <---------------AGL15   --------->ATHB12              ----------->GT1           <---------ARR14(2)              <---------ANAC46          --------->ARR14(2)            --------->REM1(1)            ------->TEIL--------------------->WRI1    --------->WOX13(1) --------->MYB46(3)         <           <-----------GT1            <---------TOE1(2)    <---------ANAC58                  -------- -------YAB1<---------At5g28300       <---------TOE2(2)    <---------ANAC58         --------->MYB52(2)   acaataaacaaatgtaccgtatataacttatatagtatcgcagattcgatgtttggcaattacttggtgactacatccaacgttgttcgtttgaatatca  22198100                                                                                                    <        --------->ATHB12                                                                          <--        <--------ATHB1   <---------ANAC46                                                         <--        --------->YAB1   <---------ANAC55(1)                                                      ---       <---------ATHB12  <---------ANAC58                                                         <--       <---------YAB1    <---------ANAC55(2)                                                <--------   <---------YAB1        --------->ANAC55(2)                                           <---------AHL20(2) --------->YAB1          <---------ANAC58  --------->ICU4                              --------->AHL20(2) ---------YAB1   ---------->DOF2      ----------->GT1                            ----------->GT1  <-- ->ARR11(3)----------->GT1     --------->AHL20(2) ----------->HVH21              <---------ANAC46 <--   cgatgatcaatgatagaaaaaaagattacgttttaaaatatggtaattaagagcgaccgctagaaaacgaacaatagaaaatgttgtatataatttgatt  22198200          <-----------HVH21       --------->At4g35610       <---------At4g35610 -----------RAV1(1)                                                                           ------- -------ANAC58                                                                               <------- -------ANAC58                                                                              <-------- ------>ANAC55(2)                <---------AHL20(2)                                         --------- -------ANAC55(2)      --------->ARR14(2)                            --------->WOX13(1)    --------->YAB1 -YAB1 <-------GAMYB   --------->GLK1(2)                 ---------->DOF2                  <---------YAB1 -------ANAC46  <---------MYB52(2)              <---------TOE2(3)  <---------YAB1      --------->ICU4 -------ANAC55(1)      <---------ARR14(2)------>ZmHOX2a(2)      --------->ICU4      *TSS<---------ICU4   acttgttgcagttgtcaaacgaacaaatctgtgatttttttgatctaatagaggtatagcaaagtagttatcattcacacatatgcatacttattataat  22198300                                                                                   <---------HSFB2a(1)                                                                                   --------->HSFB2a(1)                                                                                 ------>MYB46(1)                                                                                 ------>MYB83                                                                               <---------MYB111(1)                                                                               --------->MYB46(3)                                                                               --------->AtMYB61                                                                               <---------MYB111(2)  -                 ---------->DOF2                                               <---------MYB59 <-----      <---------YAB1                                                           <---------MYB46(2)   - -->YAB1      --------->ANAC58                                            ------>MYB83------>MYB83  - --YAB1  <---------YAB1                                                   ------>MYB46(1)--------->LBD16 -AHL20(2)    --------->ANAC58     --------->ZAT18       ---------->DOF2--------->MYB46(3)   -------- >AHL20(2)--------->ZAT6  <---------ATHB12  ----------->GT1           --------->PCF2  ------>MYB46(1)   caaacaatattatcactagcaaagtccaattagtaagtgcaaagacttgtaataaacttcaaagaatagagagacccactaccaaaccttccgaataaag  22198400            <------MYB83      --------->TOE2(3)          --------->AHL20(2)            <------MYB46(1)   <----------DOF2       --------->AHL20(1)                   --------->YAB1 -------->ANAC58            ------>MYB46(1)         <---------AHL20(1)                  <---------ATHB12 -----ID1  --------->MYB59  ------>MYB83      <----------DOF2--------->DAG2            ------>MYB83 < -------->ANAC58 <----------DOF2           <-----------GT1  ---------->DOF2            ------>MYB46(1) ---------->GT1  <---------DAG2   <-----------GT1--------->AHL20(2)    ---------->DOF2--------->WOX13(1) -->DOF2  <--------P   <-----------GT1    <-----------GT1<---------AHL20(2)  <----------DOF2        -   ccaagtaaaatggtaggccctttataaaccaactttaatccattttaacttttatatattaaaaaagggccttgaaaggctttgaaaccaatcataaacc  22198500                                                                                                  ---                                                                                                  <--                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              -------                         <---------MYB52(2)                                                 ---------                      --------->MYB46(3)                                                    ---------                   --------->MYB46(3)                                                       <--------           --------->ANAC58                                                              ------->GAMYB           --------->ANAC58                         <-----------GT1                      --------->AtMYB61   --------->ZAT6--------->TOE2(3)        <----------DOF2                               --------->MYB46(3)  <---------YAB1 --------->AtMYB61      <------------------------ANAC81              --------->MYB46(3) ---------ICU4   ------->GAMYB<----------DOF2  <----------DOF2          <----------DOF2 <---------MYB55(2) -------->YAB1  --------->MYB46(3)    <-----------GT1     <----------DOF2   <----------DOF2--------->MYB46(3)   cattatcactagtactcaaccacaaccactaacttttgtttctcctttcctttttttcttctttcacattttctctttctttctctcacaaccaccacca  22198600                                     <-----------HVH21                                    --------->DEAR3(1)                                 --------->AtMYB61                                 ------->GAMYB                                 <---------ALFIN1                                <---------MYB52(2)                                --------->MYB46(3)                                <---------MYB55(2)                               -------->P                              ------->GAMYB  <---------ANAC58                        <---------ALFIN1     <---------ANAC58 ------>AtMYB61         --------->AtMYB61 --------->ANAC46 -------ALFIN1        ----------->RAV1(1) <---------DEAR3(1) ----ALFIN1          --------->AtMYB61   <---------LBD16 --->DEAR3(1)        <---------ALFIN1--------->ORA47(1) --->AtMYB61         --------->DEAR3(1) <---------ALFIN1                            --------->CCA1(2) -->MYB46(3)        --------->MYB46(3) <---------WRKY12                       ------->TEIL >AtMYB61  <---------ANAC58  --------->MYB46(3)                            <---------YAB1 >DEAR3(1) <---------ANAC46  <---------MYB55(2)              ------->TEIL  --------->ICU4           < -ALFIN1   <---------ANAC58  <---------MYB111(2)       <----------ID1 --------->bZIP60(1)    <-------   ccacttctcaatgtcgtcttccaccaccacaacaaccaccgtccacggcgagcctgaacgacgaacttactggtgtcatgaatgcgatatgagtttatcc  22198700                                                                   --------->HSFB2a(2)                                                                   ------>ZmHOX2a(1)                              ------>ZmHOX2a(1)                    ====================HOX2a_HOX2a                          <---------ARR14(2)                       <---------HSFB2a(2)                    <---------ARR14(2)                            --------------------->WRI1                    --------->GLK1(2)                         <---------GLK1(1)              --------->ARR14(2)                        --------->ALFIN1              --------->GLK1(2)                       <---------bZIP60(2)              <---------ARR14(2)                      <---------ANAC46               <---------GLK1(2)      ------>ZmHOX2a(1)<---------YAB1                 <---------ANAC55(1)          <---------YAB1 ------>ZmHOX2a(1)  --------->ARR14(2) <---------MYB52(1)--------->REM1(2)      <------ZmHOX2a(2) ---------ALFIN1 <---------YAB1    ------>ZmHOX2a(1)  <---------ANAC58   <---------SPL7      <<<<<<<< ----GT1 ------>ZmHOX2a(1)--------->ARR14(2)          <---------ANAC58 <---------TOE1(2)  <<<<<<<<<TBF1   ctcctctcctcctccgattccgattccgattcctctcctctgttatgtccccaatgccgtgtcgatttcctcgaacgtatggatcacgattcttcttctt  22198800  Previous    Next  AGI:  At3g60075.1    Description:  pre-tRNA. tRNA-Ser (anticodon: GCT) Range:  from: 22197811    to: 22197892    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g60080.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G44330.1); similar to cytokinesis negative regulator RCP1 [Nicotiana tabacum] (GB:ABJ16351.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 22198284    to: 22199771    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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