Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          --------->AtMYB61                         --------->GLK1(1)           --------->ANAC46     <-----------GT1   <<<<<<<GRF7           <---------GLK1(1)    <----------DOF2         <---------AHL20(2) ----------->HVH21      <---------GLK1(2)   ---------->ID1            <---------YAB1 ---------MYB59      --------->ANAC58     <---------ANAC58           --------->AHL20(2) --------->RAV1(2)   --------->ANAC58     <---------ANAC46           <---------AHL20(1) ----->P         <---------ALFIN1         <---------ANAC58     --------->ANAC46       <-------TEIL ---->ETT(2)    ----------->HVH21------>ZmHOX2a(1) <-----------GT1   --------->YAB1  --------->CCA1(2)   tacctgacaacaaatcgcccgactcggaatccctcctccaagtttcgtctttttcacaccattcccctcaatattattaccaccaagattcagagtaagt  22180100                                                           <------------------------ANAC81        <--                                                          <----------DOF2                         ---              <----------DOF2                  --------->MYB52(1)                       ------>ZmHOX2a(1)       --------->YAB1                        --------->At5g28300   <<<<<<<<<TBF1     ------>ZmHOX2a(1) --------->YAB1        --------->ARR11(3)----------->RAV1(1)    <<<<<<<<<TBF1    --------->ARR14(2)   ctatgagcatcatcatctttcaagttatcttcttccattgctaccacagtaacagctcttcttttcttcttcttctccatctctatcctccttctctcca  22180200                                                              --------->ZAT14                                                              --------->REM1(2)                                                         --------->ZAT2                                                         <---------At4g35610                                                         <---------ZAT2                                                  <---------MYB52(1)                                                 --------->LBD16                                                 --------->At5g28300                                                <---------ANAC58                                 ----                         --------->ANAC58       <---------ANAC58                             --------                         --------->ANAC58       <---------ANAC46                          <xxxxxxxxxx                 <---------At4g35610===============================RAV          <---------YAB1  <----      <---------ICU4  <---------ZAT18   <---------MYB46(3)   --------->ALFIN1<------ZmHOX2a(2)  ----- -------ICU4--------->TOE2(3)       <-----------RAV1(1)  --------->At4g35610<---------ARR11(3)  ----- ------>ATHB12 --------->REM1(1)    <---------MYB46(3) <-----------RAV1(2)  --------->ARR11(3) <-----   tgatttcaacatttccttcatcagagcacgtagaagagctgttggatgagccgtgattcagctgtgtagcaacgaagagatcaccattccatttccaatc  22180300         --------->ANAC46       <---------ALFIN1<-----------GT1 ----->WOX13(1)     <----------DOF2 ->WOX13(1)     --------->ANAC46      <---------ARR14(2) xxxxxxxxxxsmallRNA(fl3)  --------->ZAT6         ----------->HVH21 -----ICU4    <---------ALFIN1        --------->ARR14(2) --->ATHB1   --------->ZAT14        --------->LBD16 ---->YAB1   <---------ZAT14       <---------ANAC55(2) ----ATHB12  <---------REM1(2)     --------->ANAC55(2)     --------->ANAC46                       ---   attcaaatcccactctacactccttttaccactaaacccgtattctaaactgtgaccttctacttcaccttcaattctagcttccatcacaaacccagtt  22180400                                                                                                 <---                                                                                            <-------MYC3                                                                                            ------->PIF5                                                                                            ------->MYC2                                                                                            <-------PIF5                                                                                            ------->MYC4                                                                                            <-------MYC4                                                                                            <-------MYC2                                                                                            ------->MYC3                                                                                            <-------PIF4                                                                                            ------->PIF4                                                                                           ==========           --------->CCA1(2)                                                               ==========     ----------->RAV1(1)                                                                   ==========     ------->GAMYB                                                                         --------->ANAC55(2)     --------->AtMYB61                                                                     <---------ANAC55(2)    --------->MYB46(3)                             --------->YAB1                          --------->TGA1a   -------->P                                      <---------ICU4                          <---------O2  ------->GAMYB                                   <---------ATHB12            ---------->DOF2 ------- <---------MYB55(2)                       ------>MYB46(1)                     =======================bZIP_DOF <---------MYB111(2)                      ------>MYB83               <---------ZAT2        --------->O2 --------->MYB46(3)                     <---------MYB59              --------->ZAT2        <---------TGA1a ------>REM1(1)    <---------------AGL15--------->AtMYB61        ------>ZmHOX2a(2)        -----------   acaacaaccacagagatgagactaaaattggagaactcaaaaccaaacccaaatcataacttatagatcggagcttgaataaaagactaagacacgtgcc  22180500                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               <-----           --------->ANAC58                                                                <--------- -------DOF2                          ------>MYB83                                         <---------MYB52(2) ===================bZIP_DOF          ------>MYB46(1)                 --------->ZAT2       <---------MYB59 =======bZIP_DOF <----------DOF2    <---------MYB59                  --------->AtLEC2    <-----------GT1 ===========================bZIP_DOF--------->TOE2(3)           --------->GLK1(2)   <---------ANAC46 >TEIL   ---------->DOF2      --------->ANAC58              --------->YAB1    --------->MYB52(1)<---- ->OsbHLH66--------->ANAC58   --------->ANAC58   *TSS  <---------YAB1--------->ANAC46 --------->YAB1-   tttgtccaaaatcaagcccctttctctatcggaagaaacctaattccaccttgttttataaatgaaaatccaagcagacaaaactgacttataactaact  22180600                                                 <---------LBD16                                                ----------->RAV1(2)                                              --------->REM1(1)                  --------->AHL20(2)                                              <---------ALFIN1             --------->LBD16                                            ================RAV          <---------LBD16        --------->AHL20(2)                  ----------->RAV1(1)          --------->At4g35610 ------DOF2                               <------NtERF2                  <---------At4g35610 ---------->AGL15                       --------->ATERF1(2)             --------->MYB52(1) ---->TOE1(3)                         --------->At4g35610              <---------WRKY38(1)          < ---->TOE2(3)--------->AHL20(2)       --------->ZAT2                 <-----------HVH21             -- ------------AGL3 <---------ARR11(3)  <---------ZAT2    --------->YAB1 <---------WRKY12            <- ---MYB.PH3(2)    --------->ARR11(3)  ==================RAV      --------->MYB52(1)              <--- -----------AGL15--------->RVE1(1)    ----------->RAV1(2)     <---------------AtSPL3             ---- --------->DOF2  --------->CCA1(1)    <---------At4g35610    ---------->DOF2   ----------->GT1-------   ttaaaaggaattaaaaaaaatatctcccaaaaaaaaaaacagctggcaacacctggaatcagaaaaagaacggtcaccggagattaaaaaaaaacagccg  22180700        ------->GAMYB                                                         --------->ARR11(3)       --------->ANAC55(2)                    --------->ATHB12                --------->ARR14(2)       --------->ANAC58                      <---------YAB1                   <---------ARR14(2)       <---------ANAC55(2)                   --------->ICU4                <---------TOE2(3)       --------->ANAC58                    --------->YAB1            --------->At4g35610     <---------DOF5.7(2)                  --------->ICU4         <------MYB83<------ZmHOX2a(1)     --------->MYB52(1)                   <---------YAB1        --------->MYB46(2)   --------->At5g28300                  --------->YAB1          --------->MYB111(1)   --------->DOF5.7(2)               --------->YAB1             --------->MYB111(2)  ------->GAMYB                     <---------YAB1              --------->MYB55(2) ---------TOE1(3)                 --------->YAB1                --------->MYB59--------->CCA1(2) ------->MYB52(1)                --------->ICU4                 <---------MYB46(3) --------DOF5.7(2)           --------->AHL20(2) <---------YAB1  <---------AtMYB61 ------MYB52(1)        ----------->GT1 <---------YAB1          <---------MYB55(1)            <------- ----->DOF5.7(2)      <---------ANAC46 --------->ICU4         <---------MYB52(1)             -------- ---------->AGL1   ----------->HVH21--------->ICU4---------->DOF2<------MYB46(1)  ----------->GT1   ttaacggtaacggaacatgaagggacggagataaaatgatgatgatgatgattaaaggagaagcgtttggtagcggtaaggatatggttttatagtgccc  22180800                                                                                                    <                                                                                                    <                                                                                                 <---                                                                                                -----                                                                                             <-------                                                                                           --------->MYB52(1)                                                                                           <---------ICU4                                                                                           --------->YAB1                                                                                          <---------ATHB51                                                                                          --------->ICU4                                                                      >>>>>>>>>TBF1  ----------->GT1-      ---------->DOF2                                              >>>>>>>>>TBF1<---------AHL20(2) <- --ZAT18                                    ---------->DOF2     >>>>>>>>>TBF1   --------->AHL20(2)<-- ->ZAT18             ---------->DOF2  <---------REM1(2)      >>>>>>>>>TBF1   --------->AHL20(2) <----   aaacaaaaaaaagaagttagatttaaagcatcttcatttcgacacagaaagagaaacagagaagaagaagaagaagaaataaaaaaatggaaataatggt  22180900          --------->LBD16   <---------ALFIN1 ---------PCF5                                                                  --------->YAB1 ---------TCP16(1)                                        <-----------GT1      <---------YAB1 ------MYB46(3)                                        <---------ICU4     <------MYB46(1) ---->ALFIN1      --------->ANAC55(2)                 --------->ICU4      <------MYB83           ---- ----RAV1(1)      <---------ANAC55(1)            ----------->GT1  <---------ATHB12             <----- -------->PCF2    <---------ANAC55(2)      --------->AHL20(2)    <---------ARR14(2)           <------ --------PCF2     <---------ANAC46         <---------AHL20(2)    --------->ARR14(2)           <------ ----NtERF2       <---------ANAC58     <----------DOF2<---------AHL20(2) <---------TOE2(2)   -------- -----ANAC46      <---------ANAC58    <---------DAG2  --------->AHL20(2) <---------TOE1(2)  <--------   ggggaccacttccccatatttcgtgtctcactcgatttcgcctttttaaataagaaaaaattaccccaatcttcgtaggttatgatactgtgcttcgcgt  22181000  Previous    Next  AGI:  At3g60030.1    Description:  SPL12 (SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE 12); transcription factor. Identical to Squamosa promoter-binding-like protein 12 (SPL12) [Arabidopsis Thaliana] (GB:Q9S7P5); similar to SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G47070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40192.1); contains InterPro domain Transcription factor, SBP-box; (InterPro:IPR004333); contains InterPro domain Ankyrin (InterPro:IPR002110) Range:  from: 22176631    to: 22180549    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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