Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <x                                                                                     <xxxxxxxxxxxxxxx                  <-----------GT1                                                  <xxxxxxxxxxxxxxxxx                 <-----------GT1                                                  <xxxxxxxxxxxxxxxxxx               <----------DOF2                                                  <-----------HVH21<---          <---------At4g35610   <---------ANAC46                            --------->ZAT6       <xxx         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <---------ICU4  --------->AHL20(2)      <xxxx       ------>ZmHOX2a(1)        <---------ANAC58       <---------YAB1   ---------->DOF2      xxxxxxxx      --------->TOE2(3)         <---------ANAC58       --------->ICU4--------->TOE2(3)  --------->ANAC46   atcttcatcctcatctgttttatcgtcttcaatgtcgtcttgctaatctacggtctcattattttcatcaacattaaaacactatcacacacacagtcac  22125500                                                                                                    -          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                 ------         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              ---------       <-----------TGA1                                                                    ------>MYB83      --------->bZIP60(2)                                                                  ------>MYB46(1)  <---------At4g35610                                                                     --------->ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    --------->MYB55(1) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       ---------->DOF2               --------->MYB46(3) xsmallRNA(i)                                     <-------GAMYB                          <---------MYB55(2) xxxxxsmallRNA(fl3)          --------->ICU4      <---------MYB46(3) --------->ANAC58  --------->GLK1(1) xxxxxsmallRNA(fl3)  <---------HSFB2a(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------GLK1(1) -------DOF2         ------>ZmHOX2a(1)        ------------>AtMYB77  --------->ANAC58 <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------ZAT14   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)------ xxxxxxxxxxxxxxxxxxsmallRNA(i2)      --------->LBD16     <---------YAB1              --------->ARR14(2) xxxxxxxxxxxxxxx>smallRNA(fl3)<---------ICU4 ----------->HVH21 <----------ID1       <------ZmHOX2a(1)   tttcagcatcgtcaccatgagtcctagagacattatttccgagtgtattgacggttgtaatgaaagagacaaacaagttgagagaaggatacccaccacg  22125600                           <---------WRKY18(1)                          --------->ZAT14                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          <---------ZAT14          <----------DOF2                        --------->TGA1a           <---------ANAC58                                  -                        <---------TGA1a           <---------ANAC46                                 <-                        ======================================bZIP_DOF               --------->ARR14(2)                        <---------O2              <---------ANAC58                   <---------ARR14(2)                        --------->ANAC55(2)    <---------DEAR3(1)     --------->MYB52(1)           --                        --------->O2         <------ZmHOX2a(1)  <---------MYB59     --------->GLK1(1)                <---------ALFIN1           xxxxxxxxxxxxxxxx>smallRNA(i)            <---------MYB52(1)    --------->AHL20(2)<---------ALFIN1 --------->ETT(2)   --------->ARR14(2)      --------->LBD16  -- -------->AHL20(2)    <-------------DYT1  <-----------RAV1(2)  --------->ANAC46  --------->LBD16  <-- --->ANAC58 --------->ARR14(2)         <---------ETT(2)   <---------ARR14(2)    <---------LBD16   --- >MYB46(3)  <---------ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->YAB1        <------ --->ANAC58<---------CCA1(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <---------MYB52(2)   ----------->GT1   aataaaaaaaatcgtatcccaccctcacttgactgtcaatgtagacaggagggcgtttagtatctacataactaacatcactcccggtatccagtaacta  22125700                                                                                                   --                                                                                                 ----                                                                      --------->ICU4             ----                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                   --------->TGA2(2)         <-------                                                                 --------->ANAC55(2)         --------           ------>ZmHOX2a(2)                                     --------->ANAC58           <xxxxxxxx         --------->ARR11(3)                                      --------->ANAC58          --------->MYB52(1)         <---------ARR11(3)                                     ------->TEIL            --------->ANAC46      <---------WOX13(1)                                   <---------ANAC55(1)          --------->ANAC58      <---------KAN4(2)                                    <---------ANAC58             --------->ANAC58    <xxxxxxxxxxxxxxxxxsmallRNA(si3)                        <---------ANAC58            <-------TEIL-- -------->TOE1(2)                                          <---------ANAC55(2)       xxxxxxxxxxxxxxxx --------ICU4                                --------->ZAT18    --------->SPL7------>ZmHOX2a(1)  <xxx ------->ATHB12                              --------->ZAT14  --------->REM1(2)     --------->ANAC58 ------->YAB1                                <---------ZAT14--------->LBD16  --------->TOE1(3)   <--- -------ATHB12                              <---------ZAT6 <---------ANAC46  --------->TOE2(3)------- ------>ICU4                  ---------->DOF2<---------ZAT18<---------------AtSPL3  --------->ANAC58< ---MYB52(2)       ------->TEIL            <---------------AtSPL8--------->ANAC46   <---------ANAC55(2)   atcatgggattgatctctatggacttcaaactgaaagtctcgcttagtgtacatacaaattccgtgtacgtcatgttttccttaacacgtacacaacgac  22125800                                                        ------>MYB83                                                        ------>MYB46(1)                                                       --------->ORA47(1)                                                      --------->MYB46(3)                                                      <---------MYB55(2)                                                      --------->DREB2C(2)                                                      <---------MYB46(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 --------->DEAR3(1) ---->MYB46(1)                                    <---------MYB55(2) ----->AtMYB61                                    --------->MYB46(3)                   ------>MYB46(1) ----->MYB46(3)                                  --------->ANAC46                      --------->MYB52(1) --MYB52(2)                                    <---------ALFIN1                        ------>MYB83 ->MYB46(3)                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->MYB46(3) xxxxxxxxxxxxxxxsmallRNA(se3)              <---------At4g35610                       *TSS ---->MYB83                                --------->At4g35610   <xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxx>smallRNA(fl3)                    ------->TEIL--------->DEAR4(1)             <---------MYB59 xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <----------DOF2 --------->DEAR3(2)  <---------GLK1(2)        --- ------MYB59               <------------------------ANAC81   ----------->GT1        --------->ANAC46 >GAMYB    ------>ZmHOX2a(1)   <-----------GT1xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---------ATHB12       <-----------GT1   <---------AtLEC2  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)------   caaacatgtcttcctctggttcaaatttccatttttcttctttgcatctccactcaccgaccatagtaaatacgagattatccattacccaactgtatca  22125900                 <---------ATHB12                 ----------->TBP             ------------>CBF            --------->ANAC58            --------->ANAC58                                                               --------->ARR11(3)      <------ZmHOX2a(1)                --------->AHL20(2)                                  <---------ARR11(3)     --------->LBD16     <---------At4g35610                                              --------->RVE1(1)   <-----------RAV1(2)   --------->At4g35610<---------ETT(2)                              --------->CCA1(1)   <---------LBD16<---------ICU4      <---------YAB1                                 --------->TOE2(3) ------>AHL20(2) --------->AHL20(2)<---------YAB1                                   --------->YAB1 --->YAB1 --------->GLK1(1)------->GAMYB    <----------ID1  <---------GLK1(2) --------->YAB1   taaattcaggagaaacccaataaatgcaactgaaaatatgattatatcgacaaaaacaaatagaatttcgttatacacacttataaacataaatatctat  22126000                 ------>MYB46(1)                ----------->RAV1(1)                                                                 <               --------->AtMYB61                                                        --------->YAB1               ------->GAMYB                                                           <---------YAB1              --------->MYB46(3)               <---------AHL20(2)                      <------ZmHOX2a(2)              <---------MYB52(2)        <---------LBD16                               <---------ARR11(3)              <---------MYB55(2)      --------->GLK1(2)                           --------->YAB1  ---             --------->ANAC46     <---------AHL20(2)                             <---------ATHB12<---   <---------At5g28300            --------->AHL20(2)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <-----------GT1------>MYB83  --------->AHL20(2)                  --------->ATHB12   --------->ARR11(3)   acatttaccattttcaaccaacaaaattagaaataaaaaaattctggatttttttataaaaaacaaaattgatttcgaacacaatgaagatcatagtgta  22126100                                                               <---------ANAC55(2)                                                               <---------ANAC46                                                               <---------ANAC58                                                <---------ANAC58                                                <---------ANAC58                                           <---------ANAC58    ----------->GT1                <xxxxxx                                           <---------ANAC58    <---------ANAC58               -------           --------->ARR11(3)            <---------YAB1    <<<<<<<<<CBP60g        <---------ALFIN1 <-----------GT1                   --------->ANAC58        <<<<<<<<<SARD1     <------ZmHOX2a(2) ---------YAB1                     --------->ANAC46     <---------ALFIN1     --------->ARR11(3)   <-- ------>YAB1                       --------->ANAC58    <------NtERF2         <---------ARR11(3)  <xxx ------YAB1<---------ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->AHL20(2)       <xxxxxx   ttataacaaaacaaatctttaaaacttcattacttacacgataatgcttgtcttggccccaaatttcgtaaataaacaagatcaacacatcttcaacatc  22126200                                                            --------->ATHB51                                                            --------->YAB1                                                            --------->AHL20(2)                  <----                                                            <---------AHL20(1)            --------->ARR11(3)                                                            <--------ATHB1               <xxxxxxxxxxx                                                            <---------ICU4              xxxxxxxxxxxxx             --------->AHL20(2)                            <---------ATHB12     <---------ANAC55(2)             <---------AHL20(2)                            <---------ATHB51     xxxxxxxxxxxxxxxxxxxxx            <---------ATHB12                           <---------YAB1           --------->ANAC55(2)<-       --------->ANAC58                           --------->ATHB51          xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->ANAC58                           -------->ATHB1         --------->YAB1 --------->ICU4      <-------TEIL                                --------->YAB1        <---------YAB1<---------ICU4  ------->TEIL                                    <--------HAHB4       --------->AHL20(2)xxxxxxxxxxxx  <-------TEIL <---------TOE2(3)                  <---------ICU4<---------AHL20(2)    -------->HAHB4 xxxxxxxxxxxxxxsmallRNA(se3)                     <---------ATHB51    <---------AHL20(2) <---------YAB1 -->TOE2(3) --------->ICU4                       <---------YAB1<---------AHL20(2)     --------->YAB1 -------------AtSPL3                <----------DOF2 <---------YAB1  --------->YAB1   <---------YAB1-- xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   --------->TOE2(3)--------->YAB1<---------YAB1    --------->ICU4-- xxxxxxxxxxxxxxxxxsmallRNA(i2) <-------TEIL      --------->ICU4--------->AHL20(2)    <---------ATHB12   aatgtacgttcgcaattaatgtttgtttatgggttcatctttaactcaacaattattatcaataattttataatattataacatgtaatgatgattttgc  22126300                                                                                                 <---                                                                                                 <xxx                                                                                                xxxxx                                                                                               ------                                                                                               ------                                                                                               ------                                                                         <---------ARR11(3)  --------   <---------ICU4                                                 ----------->GT1            <------- -----AtLEC2                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <-----------ARR10--------->SPL7 xxxxxxxxxxsmallRNA(si3)  <----------DOF2       --------->bZIP60(1)      --------->ARR11(3) <xxxxxxxx xxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <----------ID1        xxxxxxxxxxxxx xx>smallRNA(i2)       <-----------GT1 <---------AHL20(2)        <---------TOE2(3)    <xxxxxxxxxxxxxx --------AHL20(2)----------->GT1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->RVE1(1) --------->ZAT14 xxxxxxxxxxx>smallRNA(si3)<---------DAG2        <---------bZIP60(1)     --------->CCA1(1) ---------->DOF2 ------->AHL20(2)<---------ANAC46 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------->ICU4    <---------ANAC55(2)  --------->AHL20(2)       ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   attaattgtgacaagagtcacgtttaaactttttgagccattaaatgttgatgtcatttagtttttaaaggaaaaaatctcccttctagctgtacagccg  22126400  Previous    Next  AGI:  At3g59860.1    Description:  transposable element gene. Mutator-like transposase family, has a 8.4e-21 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 22124828    to: 22125885    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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