Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------ALFIN1                  --------->ATERF1(1)                  <------NtERF2                 ------>NtERF2                 <---------RAP2.3(1)                                                       --------->ETT(2)                <---------PCF2                                                             <---------ETT(2)                <---------bZIP60(1)                                                      --------->LBD16                --------->bZIP60(1)                                             --------->ARR11(3)                --------->PCF2                                                  <---------ARR11(3)               --------->RAP2.3(1)                                         <------NtERF2--------->DEAR3(1)               <------NtERF2                                   --------->At4g35610    ------>NtERF2              <---------ATERF1(1)         <---------DAG2       <---------HSFB2a(1)   --------->DEAR3(1)             --------->ALFIN1             <----------DOF2      --------->HSFB2a(1)   --------->ANAC46    --------->ARR11(3)                --------->LBD16          <---------At4g35610  <---------LBD16    <---------ARR11(3)              <---------LBD16            --------->HSFC1(2)<---------GLK1(1) --------P <---------ANAC58     <---------ANAC58               <---------HSFC1(2)--------->GLK1(1) -------->GT1<---------DEAR3(1) <---------ANAC58               --------->ZAT2   <-----------ARR10 ->AHL20(2)<---------ANAC58    <---------ICU4       <---------ARR11(3)   <----------ARF1<---------ANAC46 >GT1    <---------At5g28300  --------->ICU4    <---------AtLEC2   ----------->RAV1(2)--------->LBD16   tggtaagttcttaccgtggcgccactcgggcaattcttgccggactttttgcaagaccatagagaagctccctgggcgtcaagaactccgccgtagacag  22122200                                                                                                    <                                                                                             --------                                                                                      --------->ANAC58                                                                                      --------->ANAC58                                                                                      --------->ANAC55(1)                                                                                      <---------ANAC55(2)                                                                                      --------->ANAC46                                                                                     <---------LBD16<                                                                                    --------->CCA1(2)                                                                                   --------->ARR14(2)                                                                                   --------->ARR11(1)           --------->GLK1(2)                                                       <---------ARR14(2)       <---------HSFB2a(2)                                                    <---------ANAC46-------       --------->HSFB2a(2)                                                    --------->TOE1(2) <----     <------NtERF2                                                          ------->TEIL   <---------ANAC55(2)    <---------RAP2.6(3)                                                   --------->ZAT18  --------->TGA1a    ------>NtERF2                    <----------DOF2   --------->GLK1(2)  <---------ZAT18  --------->ANAC55(2)   <---------ANAC46          <---------ATHB12--------->WRKY38(1)   ----------->RAV1(1)--------->ANAC55(2)   agatgccgtcgagatgctggaacaaaatccaatagttttctttaccgatgactcgataatccgatggagccacaagtgtaccttggatacggaacgtgac  22122300                                                                                            ------->MYC3                                                                                            <-------MYC3                                                                                            <-------PIF4                                                                                            ------->PIF4                                                                                            <-------MYC2                                                                                            <-------MYC4                                                                                            ------->PIF5    <---------ANAC58                                                                        ------->MYC2    <---------ANAC46        --------->AHL20(1)                                     -------->ZAP1    <---------ANAC58 <-----------HVH21                         <---------MYB59   <---------WRKY18(1) ---------ANAC58    ----------->GT1                           ----------------->AGL1        <-------PIF5 --->HVH21--------->ZAT6   --------->YAB1              <---------MYB52(1)       --------->WRKY38(1) - ---------ANAC58   --------->MYB46(3)             <-----------HVH21             --------->WRKY12<---- -->MYB52(1)       --------->DEAR3(2)            --------->DEAR3(1)    ----------->HVH21  ------->TEIL -----ANAC46     --------->ARR14(2)       <XXXXXXXXXXXXXXXXXXXXMIR866-5P        ----------->HVH21  <-   ggacttgcgtttacacttggaaccgtcaaaaataatgcttcttaacaaaaaccgtcccttaggtaccaaaatggtgaccggtttgaccgatgcacatgct  22122400                                          --------->ATERF1(1)                                          <------NtERF2                                          <---------MYB52(1)                     <---------ZAT2                                         <---------RAP2.6(3)                     --------->ZAT2                                         <---------SPL7                          <---------At4g35610                                         ------>NtERF2            <---------ARR11(3)         --------->RAP2.6(3)             <-----------HVH21        --------->ARR14(2)         --------->SPL7                 --------->ATERF1(2)       --------->ARR11(3)        <------ZmHOX2a(1)               <---------ATERF1(2)       <---------ARR14(2)   ----------->RAV1(1)            <---------ARR14(2)    --------->LBD16          --------->At4g35610   <---------ALFIN1               --------->ARR14(2)   <---------ANAC55(2)<------MYB83 <------ZmHOX2a(1) -------->PCF2---------->DOF2   <------MYB46(1)        <---------ANAC46   <------MYB46(1) --------->At4g35610 ------DOF2 --------->At5g28300 <---------DEAR3(2)    <------NtERF2      <---------TOE1(2)<---------At4g35610 ----------TCP11(1)             <------MYB83   --------->ALFIN1  <------ZmHOX2a(1)   <---------TOE2(3)   ttggcccacaggacggtaaaggccttggtcgagtcggttttgccgtcgggtttggctccgtaagagaggatattgtaggtttgagctgaggaagatgaga  22122500                                                                                        --------->ALFIN1                                                                                      *TSS                                                                                      <---------ANAC46                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                                                                     <---------MYB46(3)                                               ---------->DOF2                      <---------ANAC46                                           <----------DOF2                       ----------->HVH21             <------ZmHOX2a(1)            <---------ANAC46                    --------->ALFIN1       ---------->DOF2--------->YAB1      <---------ANAC58                ---------->DOF2 <---------ANAC46    <------ZmHOX2a(1)<---------YAB1       <---------ANAC58--------->CCA1(2)--------->DAG2 --------->ALFIN1   ccgagaggagaaagaggagaactatgagaagtgaagaatgcattgctttgaaagtgagagatagagggagaagttgaaaagtggtgatgggtgtgtggga  22122600                     <-----------TBP --------->ARR14(2)                 ----------->GT1     <---------ARR14(2)                <---------TOE2(3) <---------ANAC46                --------->MYB59   <---------ANAC58                                                ---            <---------ZAT6        <---------ANAC58                                               <---          <---------ANAC46        --------->ANAC55(2)               <---------TOE2(3)          ------        --------->ZAT14      <---------ARR14(2)                  <---------WOX13(1)           <------        <---------ZAT14      --------->ARR14(2)   <------------CBF <-----------GT1     <-----------GT1   tttgaaacggtttagtgtaaggtatatatagtatttgcgtatttgtgaaatggattgttttttgttgattaacatttttctcttgttattttctatatta  22122700                   ------>ZmHOX2a(2)                  --------->CCA1(2)                  <------ZmHOX2a(2)                 <---------AGP1                 --------->ARR14(2)                 <---------ARR11(3)                 --------->ARR11(3)                 <---------ARR14(2)                 --------->AGP1                <---------CCA1(2)       ------->GAMYB      --------->ANAC46      --------->ANAC58      <---------AHL20(2)      --------->ANAC58      --------->AHL20(2)                                                 ------ ------>YAB1   ----------->ARR10                                ----------->GT1                ------ ------YAB1 --------->TOE2(3)                            --------->TOE2(3)                     <----- --->YAB1   --------->TOE1(2)                          <---------AHL20(2)                      <----- ---AHL20(2)--------->TOE1(3)<---------AHL20(2)   <---------AHL20(1)       >>>>>>>>>TAC1    ---------   tcatatcaacgaaaccttagatctgaagaataaaatttgatatgtacagtagtatattttcttaaatagtttattcgagtgttttgtcaaatttcaaaat  22122800            --------->CCA1(2)           <---------ARR14(2)        <--------P      ----------->GT1     --------->ALFIN1 --->AHL20(1) --->ARR11(3)                                                   --------->ZAT6         ----------->GT1 ----AHL20(1)                         <-----------RAV1(1)      ------->TEIL          <---------GLK1(2) ----ARR11(3)        --------->HSFB2a(2)                  --------->YAB1  ----------->GT1      <----- ------>AGL15        <---------HSFB2a(2)<---------ANAC46 <---------YAB1 --------->At4g35610<---------AHL20(2)   attgcaagtggtagatttgagttttagaagtttgtgtctattgtgggtttatatcgtttatcatgaactctatatgctgaaaaatcagattgtttattta  22122900                                --------------->AtSPL8                               <---------ANAC46                  <---------ICU4                         <---------AHL20(2)                  --------->AHL20(2)    <---------At5g28300 --------->AHL20(2)   <---------ANAC55(2) <---------AHL20(2) ----AHL20(2)       ------>ZmHOX2a(2) --------->YAB1<---------AHL20(2)     ----------->GT1   tagatttactgtgactaaatgatcgtttaaattgtttgtatcatattacatgaattaatctctataaatatttcatatagtaatattatctaattcatgt  22123000                                                     --------->ANAC58                                                     --------->ANAC58                                                    --------->DAG2                                                   ---------->DOF2                                           ------>ZmHOX2a(1)         --------->YAB1                                    --------->AHL20(2)              <-------TEIL                                    <---------AHL20(2)          <---------ATHB12                        <------------------------ANAC81        ------>MYB46(1)                      -                       <---------MYB52(1) --------->TOE2(3)    ------>MYB83        --------->YAB1 ---   aagtgtatacaaaatagttttgtctgttttttttttttttaaatcctcaaaaaaaaagcaaaaccaaacattcatattttctgaatcaaaacaaaaatca  22123100  Previous    Next  AGI:  At3g59850.1    Description:  polygalacturonase, putative / pectinase, putative. similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT2G43870.1); similar to polygalacturonase [Pyrus communis] (GB:CAH18935.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 22120141    to: 22122586    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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