Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->At4g35610                                         <---------ZAT2                        <---------AHL20(2)                       --------->AHL20(2)<------NtERF2                                    --------->YAB1                ---------->ID1           <---------At4g35610                          ---------->DOF2            --------->GLK1(1)        --------->ANAC46                              --------->TOE2(3)           --------->ARR14(2)   <---------GLK1(1)                                 --------->ANAC58      --------->MYB52(1)--------->AHL20(2)                                       ------->TEIL ---DOF2   <---------ARR14(2)   --------->GLK1(1)------->TEIL  <---------ANAC55(2)--------->ANAC58   gaaattgtaaacggatttgtctctatttatttggatttcaggcagcttatgtatgttagaacatcatgtgaatgttagacatgaacgtaaaagaataaca  22002400                     --------->ANAC58                     --------->ANAC58               <-----------GT1            <---------ICU4                                                           --------->AHL20(2)           --------->ICU4                          ---------->DOF2      --------->YAB1           <---  <---------STY1(2)---------->DOF2          --------->YAB1           --------->YAB1--------->TOE2(3)   tgttagctagggactaattaccaaagccatattttgaagaacaaaatcaaaatgaaagtttattttgacaagaataatagcaaaacattatttagctatt  22002500                           --------->YAB1                   <---------AHL20(2)                       <---------ICU4                  --------->YAB1                            --------->ATHB12           --------->GLK1(1)                                --------->ATHB51               ------>ZmHOX2a(1)           <---------GLK1(1) --------->ICU4                --------->ICU4                ------>ZmHOX2a(2)   <---------AHL20(2)   --------->WOX13(1)                 <---------YAB1              <---------ARR11(3) ------AHL20(2)   --------->AHL20(2)                      --------->TOE2(3)        ------->GAMYB   ttttttaaaatggaaatctattatatcagtcatatttagctatgtttttcgaaaaaaaaacattattgctatgtgagaaattcaaccgtgatcctataac  22002600                                      <---------RVE1(1)                                     <---------GLK1(2)                                     <---------ARR14(2)                                     --------->ARR14(2)                             ------>ZmHOX2a(1)                          <-----------GT1            <---------AHL20(2)       <---------ARR11(3)                          <---------ARR11(3)            --------->AHL20(2)     --------->LBD16     ---------->DOF2 <---------At4g35610      --------->ANAC46   <-----------GT1  <---------YAB1               --------->At4g35610   attttttcccacaattaaacattgaattttcctattccagattttttatagctggacaaaagaattcatggtgagaggcccaaggtctattacgacctag  22002700                    <---------REM1(2)                   <---------RAP2.6(3)                   ------>NtERF2                                                                    -                   ----------->RAV1(1)                                                              <                  ----------->HVH21                                                                <-                  <---------ETT(1)                                                               ----                  >>>>>>>>>>DREB1A                                                        <---------HSFB2a(2)                  >>>>>>>>>>DREB2A                                                        --------->HSFB2a(2)                  --------->RAP2.6(2)                                        --------->ANAC58    ----                 --------->DEAR3(2)                                          --------->ANAC58    ----             ---------->DOF2                                                 --------->ANAC46    <---            --------->WRKY18(1)                                    ----------->GT1        --------->LBD16          --------->ANAC46       <------------CBF                  <------MYB46(1)        ------>ZmHOX2a(1)          --------->ANAC58     <---------AHL20(2)                  <------MYB83          <---------LBD16          --------->ANAC58     --------->AHL20(2)    <-----------GT1    ---------->DOF2 ----------->RAV1(2)    --------->SPL7--------->DEAR3(1)    ------------>CBF   <-----------------AGL1       <---------LBD16   gcccagtaccacaagtcaagccgacacagacaaaaaattggattcaatgtttttttttctgactcgatttggtgaaaagacgaaactttctcctggaaaa  22002800                                                         ------>ZmHOX2a(2)                                                         ====================HOX2a_HOX2a                                                        <------ZmHOX2a(2)                                                        <---------GLK1(1)                                                        --------->GLK1(1)                                                        =====================HOX2a_HOX2a   *TSS                                                --------->ARR11(3) -------->HSFB2a(2)                                    <---------AGP1 ---------HSFB2a(2)                                    <---------ARR11(3) --------LBD16                                        --------->RVE1(1)   --------->LBD16 ----->GLK1(2)                              --------->ANAC58             <---------HSFB2a(2)        < ----->ARR14(2)                   --------->YAB1   ---------->DOF2       --------->HSFB2a(2)        < ----->ARR11(3)            ------->TEIL     --------->ANAC58          ------>ZmHOX2a(1)         ----- ------ARR14(2)      --------->ANAC46       --------->ANAC46  <----------DOF2              <---------AtMYB61   atctggaacaagttagcgcgaacacgacgaatcgaatcagagtcccaaggaagaaaagatctctctttcatccttctggagaattcatatactttggtcg  22002900                                                      <---------ANAC58                                                      <---------ANAC58                                                      <---------ANAC46                                            ------>ZmHOX2a(2)                                           --------->CCA1(2)                                           <------ZmHOX2a(2)                        <----------DOF2   --------->ARR14(2)                --------->ARR11(3)        <---------ARR11(3)            <-----------GT1       <---------At4g35610                <---------ARR14(2)        <----------DOF2       --------->At4g35610                --------->AGP1  <---------ANAC58 ------MYB83  --------->DAG2              <---------AGP1  <---------ANAC46 --------->TOE2(3) ------MYB46(1) <---------ARR11(3)        --------->ARR11(3)  <---------AtLEC2 ---->ATHB12---------->DOF2              <---------CCA1(2)<---------ANAC58--------->ANAC46   <------ZmHOX2a(1)   attggttttagctgaaaaggtctctgctttgagactaattctcagatctgtgtattgcttgcttgcatcgctttctacctcattgtcgatttggaggagg  22003000                                                    <---------YAB1              --------->YAB1                                                  <---------bZIP60(1)      <----------DOF2                                                  --------->bZIP60(1)    --------->ZAT2                                                --------->YAB1           --------->At4g35610                                               <---------YAB1    --------->ANAC58                                      <----------DOF2            --------->ANAC46                <---------At4g35610--------->ARR11(3)            --------->ANAC58            <-------          <---------ANAC46         <---------ARR11(3)--------->ATHB12  ------->GAMYB   <---------MYB52(1)   gaattgagcattgggtttagcttcttaagtatgggaagacctttgttttatgatatcattgagaaaccagcaacgagctgtatcgtaacgttatgcagtg  22003100                               <---------ZAT18                                                      <                              <---------ANAC58                                                      <                              <---------ANAC58                --------->ZAT14           <---------ICU4                             --------------->AtSPL8           <---------ZAT14          --------->ICU4                --------->At4g35610                    --------->ANAC55(2)             <---------YAB1   <------MYB46(1)           <---------------AtSPL8    <---------ANAC55(2)           <------ZmHOX2a(1)   <------MYB83 <---------At4g35610                  --------->CCA1(2)     <----------DOF2     <----- --ANAC46<---------YAB1   <---------ARR14(2)         <-----------GT1     --------->ZAT18--------->ATHB12   tgatttggtttgtgattcagaagaagagtattgggtactctcaagttggattgagttacgagactgcaatcgaagggcattactggaggatgattacatc  22003200                                                                                      --------->ARR11(3)                                                                                     <------MYB83                                                                                     <------MYB46(1)                                                                                    --------->MYB59                                                                                   <--------P                       ------->TEIL                                          <-----------HVH21       --------->ANAC55(2)                                                  <------MYB46(1)       <---------ANAC55(2)   <---------ANAC46                               <------MYB83 ----------DOF2   <---------ANAC58           <---------DAG2                --------->MYB59 ---------DAG2    <---------ANAC46           <----------DOF2            --------->ZAT2<---------ARR11(3) ----At4g35610    <---------ANAC58    <---------YAB1           <---------MYB46(3)<---------REM1(1)  <   tgctttatcacatattagtgtcttgcatcttgtgtttaacatgagtgctttatggagtcttggtgttgttgaacagctaggtcatgtaggtcttggcact  22003300  Previous    Next  AGI:  At3g59520.1    Description:  rhomboid family protein. similar to rhomboid family protein / ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G58460.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67998.1); contains InterPro domain Peptidase S54, rhomboid; (InterPro:IPR002610) Range:  from: 22002803    to: 22004240    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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