Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    ----------->GT1                                 <---------DEAR3(1) ---------AHL20(2)      >>>>>>>>>GT-1 -------->AHL20(2)   ----------->GT1 <-------TEIL                         <---------AHL20(2) ------DOF2        <-----------RAV1(2)    --------->TOE2(3)    <----------DOF2     <---------ANAC46 -GT1        <---------ICU4 <-----------RAV1(2)           <-----------GT1 --------->AHL20(2)   ttttaattttctgaatcaataccaggtaaatcaggggggttcaaacttagtctatcttcttaactcttttttgtttttaaatgttttgtagactatgtaa  21980900                                                         --------->ARR11(3)                                                         <-----------ARR10                                                         --------->ARR14(2)                     <-----------GT1                ---------->DOF2                    <-----------GT1              ----------->GT1                <---------DAG2               --------->DAG2                <----------DOF2             ---------->DOF2     --------->ANAC46       ------>ZmHOX2a(1)<---------DAG2    --------->YAB1 <---------ARR14(2)                         -      --------->TOE2(3) <----------DOF2   --------->AHL20(2)  --------->ANAC46   ----------->GT1    <   actctcatcctaaatctactttttaacttttctatcgatagcaataaaaagttgtaaagtatctacacaaaaacaagatgaaatggtcaaaagtctgtga  21981000                <---------AHL20(2)                <---------YAB1                             ----------->GT1               <---------AHL20(2)                          <---------ZAT6       ------>ZmHOX2a(1)               --------->AHL20(2)                     <----------DOF2  <---------ICU4             <--     <---------ZAT6                               <---------ZAT18   --------->YAB1                <-- -------->STY1(2)             <----------DOF2  <---------ANAC58  --------->YAB1 --------->HSFB2a(2) ---------STY1(2)       ---------->DOF2        <---------ANAC58--------->AHL20(2)    <----------DOF2   ctagctagtgtttgtattttaattcagaaagactttaatgagtttatagtcgtgctctttagtgttaaaataacaattactcctagacttttagttattt  21981100                         --------->YAB1                     <-------TEIL                     --------                      ----------->RAV1(1)              ---------->DOF2       <---------DOF5.7(2)               --------->ARR11(3)              --------->AHL20(2)            --------->MYB52(1)               <---------ARR11(3)              <---------AHL20(2)        <---------TOE2(3)  ---------               --------->ARR14(2)              --------->AHL20(1)      <---------ATHB12     <--------               <---------ARR14(2)          <---------AHL20(2)     --------->ANAC58         <---------ATHB12              --------->GLK1(1)            <---------AHL20(1)    --------->DAG2          --------->WOX13(1) -------AHL20(2)   ------>ZmHOX2a(1)       --------->AHL20(2)   ---------->DOF2<---------ANAC46 -------YAB1  <---------GLK1(1)   <---------YAB1   <-----------GT1--------->ANAC58    <--------ZAP1   tttattgcattcttggatatcctccaacaatattgtattattcaaaaaattttttactaaagtccataaagcaatgaggtaacgtctaggtcaattaatg  21981200                                                                   <---------YAB1                                                                 <---------ICU4                                                                 --------->YAB1                                                                --------->ICU4                                                                <---------YAB1                                                              --------->YAB1                                                              --------->ATHB51                                                              <--------HAHB4                                                              <---------ICU4                                                    --------->ARR14(2)                                                    <---------ARR11(3)    <---------ANAC58                                                    <---------ARR14(2)    --------->ANAC46         --------->MYB52(1)                         --------->ARR11(3)    --------->ANAC55(2)   -----       --------->MYB46(3)                           <---------ARR11(1)    <---------ANAC58    -------   <------ZmHOX2a(2)                               <---------GLK1(1)    <-----------GT1       <------ ->MYB52(1)                  <---------YAB1        <---------CCA1(2)--------->AHL20(2)      ------>ZmHOX2a(1) >AHL20(2)             --------->AHL20(2)    ---------->DOF2  -------->ATHB1      <---------CCA1(2) -AHL20(2)  <---------MYB46(3)         --------->AHL20(2)    --------->ICU4     <---------ALFIN1-----   gatggatcatccaacggttgtaccaaaaaatactatagagattaaaaaaaagcatatctctgaattattattatttacgtccccatctctcttcctctat  21981300                                              ------>MYB46(1)                                              ------>MYB83                                *TSS        <---------MYB59                               <---------ARR14(2)        --------->At4g35610    <---------ARR11(3) ---->AHL20(2)        <---------ICU4        <---------MYB46(2) -------->AGL15      <-------TEIL          --------->ANAC46 ---------AGL15    --------->YAB1  ------>ZmHOX2a(1) ------>TBP   ------------>CBF --------->ARR14(2)   --------->YAB1                 ---------->DOF2   aaatagtataagcagagacaatattcatttcaagttcctctgtataccaaactatcaaaaaaactctctccatttctgttctcaacaaagccaagagtta  21981400                                   <----------DOF2                                                ---                                   <------------------------ANAC81                               ----                             <-----------GT1                 <---------HSFC1(2)           <-------TEIL                          <----------DOF2 <----------DOF2    --------->HSFC1(2)   ------>ZmHOX2a(1)   tggtgagagtctttcttctctacaacctctttaactcctttcttctttgtttagttcccaagaagcttagagttttcttccctccttcttggtacatcga  21981500                ----------->RAV1(2)               ------>NtERF2              --------->DREB2C(2)              ------->GAMYB              --------->DEAR3(1)              <---------ALFIN1            --------->ABI4(1)                    ------>ZmHOX2a(2)           <---------ALFIN1                    --------->AGP1           --------->AtMYB61                   <---------AGP1          <---------MYB55(2)                   --------->ARR11(3)          --------->MYB46(3)                   <---------ARR11(3)         ------>MYB83                       <--------P         ------>MYB46(1)                   <---------MYB52(1)        --------->ANAC46                  --------->LBD16                                  --------->ANAC58       --------->MYB46(3)               <---------LBD16                        --------->MYB52(1)      --------->DEAR3(2)             <---------GLK1(1)                       --------->ANAC58  --------->ANAC58                  ------->TEIL<------ZmHOX2a(2)            --------->ANAC58  --------->ANAC58      ------->TEIL--------->ARR14(2)                   <---------HSFB2a(2)       -- --->NtERF2--------->DEAR3(1)<---------ARR14(2)<---------ARR14(2) <---------At4g35610      --------->ANAC46 ----->ANAC46--------->DEAR4(2)    <---------GLK1(2)            <-----------RAV1(2)        --------->ANAC58   cgacaagaacccaccaccgcctgatgaatcggaaactgaatctccggtagatctaaaacgagtgtttcagatgttcgacaagaacggagatggacgcatc  21981600                                                               <-----------RAV1(2)                                                               <---------HSFB2a(2)                                                         ------>ZmHOX2a(2)                                                        <------ZmHOX2a(2)                                                        --------->CCA1(2)                                                       <---------ARR14(2)                                                       <---------AGP1   --------->HSFB2a(2)                                       <----------DOF2 --------->AGP1   <---------HSFB2a(2)                                    --------->GLK1(2)  <-----------ARR10<-----------RAV1(2)                                   <---------GLK1(2)   --------->ARR14(2)                                  <------ZmHOX2a(1)    <---------ARR11(3)                                  =============================HOX2a_HOX2a                              --------->TOE1(2)        --------->ARR11(3)--------->LBD16                            --------->ARR14(2)       ----------->ARR10 ------>ZmHOX2a(2)                 --------->GLK1(2)==============================HOX2a_HOX2a          ----------->HVH21 --------->GLK1(2)      ---------->DOF2   --------->ARR11(3)            <-        --------->At4g35610 <---------ARR14(2)   <<<<<<<GRF7  ------>ZmHOX2a(2)                  <---        <---------At4g35610<---------GLK1(2)   ----------->HVH21 <---------At4g35610             <--- -------->DOF2  <---------GLK1(2) ===================================HOX2a_HOX2a                 <---   acaaaggaagagctgaacgattctctagagaatctaggaatctttatgcctgacaaagatctgatccagatgatccagaagatggatgcaaatggagatg  21981700    --------->ETT(2)  --------->REM1(2) --------->ALFIN1              <---------TOE1(3) --------ANAC46                <---------TOE2(3)        <------ZmHOX2a(1) ------ANAC58                  <---------YAB1     --------->DAG2 ------ANAC46              <----------DOF2       ---------->DOF2                                    - ------ANAC58           <-----------------AGL3 <------ZmHOX2a(1)       --------->CCA1(2)         <---   ggtgtgtagacataaacgagtttgagtctctttatggttcgattgtggaggaaaaggaggaaggggacatgagagacgcgttcaatgtgtttgatcaaga  21981800  Previous    Next  AGI:  At3g59440.1    Description:  calcium-binding protein, putative. similar to MSS3 (MULTICOPY SUPPRESSORS OF SNF4 DEFICIENCY IN YEAST 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G43290.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68118.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Parvalbumin; (InterPro:IPR008080) Range:  from: 21981332    to: 21982099    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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