Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    <-----------HVH21                <------ZmHOX2a(1)                 --------->MYB52(2)               <------MYB46(1)           --------->At4g35610                <-------TEIL                      <------MYB83              <---------At4g35610       <---------ANAC58                         <--------P                  <---------ZAT2       <---------ANAC46                      --------->ALFIN1               --------->ZAT2       <---------ANAC58                   --------->DAG2                   <-----------RAV1(1)    <---------TOE2(3)                    ---------->DOF2    --------->ARR11(3) ---->GT1   <---------TOE1(2)         <------ZmHOX2a(1)     <---------ARR11(3)             <---------MYB46(3)   aaatttgtggtttgcaggttcgtcaccttgaactgaagaaggagaaagtggtaggaagagaagaacttgtcaaatttctgctggatgcaatggctgttca  21970100                                                                 <---------AHL20(2)                                                                 <---------YAB1                                                              --------->ICU4                                                              --------->AHL20(1)                                                       ----------->GT1                                                       <------MYB83                                                       <------MYB46(1)      <---------ATHB12                                                    <---------ANAC58       --------->ANAC58                                                    <---------AtLEC2       --------->ANAC46                                    ---------->DOF2 <---------ANAC58       --------->ANAC58                             ----------->GT1        <---------ANAC46  <-----------GT1                    --------->At4g35610       <---------DAG2  <---------AHL20(1)             <-------    <---------GLK1(1)  ---------->DOF2        <----------DOF2 <---------ARR11(3) ------->GAMYB  <----    <-----------GT1 <---------At4g35610    <---------ALFIN1   --------->ARR11(3)--------->MYB46(3)   atttagaaacccctctgtttggagctaaagagagtaaataaagagccactttttgcttggtgaaaatattatttgccactcaacagtcacaaattttgat  21970200                                                                 ================MYC_MYB                                                                 ------>MYB83                                                                 ------>MYB46(1)                                                       --------->ZAT6                                             --------->YAB1      -------->P                                     <-------GAMYB    --------->ZAT18       --------->TOE2(3)            --------->MYB52(2)--------->ZAT14      <<<<<<<<<ARR1                 ----------->GT1   <---------ZAT18      <<<<<<<<<ARR2  --------->ARR11(3)     <-------TEIL        <---------ALFIN1 --------->YAB1     <---------CCA1(2)============================================MYC_MYB --YAB1--------->YAB1<---------ARR11(3) <-------TEIL  <---------ZAT14             --------->ZAT6 -----YAB1     <-------TEIL      <-----------HVH21  --------->ZAT14    --------->TGA1a   cattcacaatcttaatgtgcatatatcttggtattggtcagttacattcatatgtgtacactagcccaacctcacatcagtttaatactactgaaactga  21970300                                                                             --------->YAB1                                                                             <---------ICU4                                                                            <---------YAB1                                                                            --------->ICU4        ---                            --------->ATHB12                              --------->YAB1<---------TOE1(2)                           <---------YAB1     ----------->GT1          --------->YAB1   <---------TOE2(2)       ----------->GT1  ------->TEIL         ----------->GT1       <---------AtLEC2  --------->YAB1   gggtgcaaatggttaacatgtaaatgaatatgattagaaattttagtgggataaattgggatggataatgcatgaataatcatggaatcatatgtttttt  21970400                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                             xxxxxxxx                                                                                          xxxxxxxxxxx                                                                                         ---------->DOF2                                                                                        xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       *TSSxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx        <-------GAMYB                                                                  xxxxxxxxxxxxxx       --------->MYB111(2)                                                             xxxxxxxxxxxxxx       <---------MYB46(3)                                                       ---------->DOF2    <-   <---------TOE2(3)                                                    --------->LBD16xxxxxxxxxxxxxx ------>ZmHOX2a(1)       ------------>CBF                              <---------ANAC46xxxxxxxxxxxxxx <---------MYB52(1)     ----------->GT1      ---------->DOF2           <---------ANAC58xxxxxxxxxxxxxx ------->ID1 --------->ETT(2)          ----------->GT1                 <---------ANAC58xxxxxxxxxxxxxx   gtccttaggttgttgtcgatatcaaatggcaatatggcataatgttacaaagtacttacagacttagtgaaatgcgtggaacaaaagcccgtatagctca  21970500                                                 --------->ALFIN1                                             <---------ANAC58       <-----------HVH21                   ------>ZmHOX2a(1) xxxxxxxxx>smallRNA(fl3)                  --------->TOE1(2) xxxxxxxxx>smallRNA(se3)                ===================================HOX2a_HOX2a xxxxxxxxx>smallRNA(si3)                <------ZmHOX2a(2) xxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxx>smallRNA(s) xxxx>smallRNA(fl3)                    <---------ARR14(2) xxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxx>smallRNA(s) xxx>smallRNA(fl3)                xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxx>smallRNA(i2)           --------->LBD16 --------->ALFIN1 xx>smallRNA(i)              <-------TEIL --------->TOE2(2) xx>smallRNA(s)              xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxx>smallRNA(i2)     <---------ARR14(2)<---------ANAC46       ------>ZmHOX2a(1) xxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   <-----------GT1 xxxx>smallRNA(se3)        --------->ARR14(2)<---------ANAC58   <-----------GT1 --------MYB46(3)        xxxxxxxxxxxxxxxx>smallRNA(le3)     <---------AHL20(2) xxx>smallRNA(si3)<---------ZAT14xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              <- xxxx>smallRNA(si3)     xxxxxxxxxxxxxxxx>smallRNA(le3)     <---------AHL20(2)   --------------->AGL15 xxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    <----------DOF2       <-----------GT1     <--- xxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(se3)   <---------DAG2    <----------DOF2       ------   gtggtagagcgtcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgtggcacttttttattttcctctccttttaactacttattgtatttgtt  21970600                                                                                             <-------                                                                                          <--------HAHB4                                                                                          -------->HAHB4                                                                                          <---------ICU4                                                                                          <--------ATHB1                                                                                          --------->YAB1                                                                                          --------->ATHB12         >>>>>>>>>>>>WRKY18                                                              <---------YAB1       <-----------GT1                                                                   <---------ATHB51   --------->ATHB51                                                                      --------->ICU4   --------->ATHB12                                     <-----------GT1                --------->YAB1  <---------YAB1                                    --------->AHL20(2)              ----------->GT1  --------->ICU4                                    <---------AHL20(2)            <----------DOF2 --------YAB1----------->HVH21                     --------->AHL20(2)          <---------ARR11(3) ------MYB46(3) --------->ZAT6                   --------->YAB1            ---------->DOF2--------->ATHB51 --------------->WRI1       ----------->GT1     <---------ATHB51<-------TEIL   --------->ARR11(3)   tgttattattgaccattgacagtaatcaacaggtaaaaaccactagtacaataataaataaccaggttcacttatacaaaagaactttgtaataattagt  21970700                                                                  <------ZmHOX2a(1)                                                            <----------DOF2                                                         ------>ZmHOX2a(1)                                                       <---------ANAC58                     ---------                                                       <---------ANAC58                     ---------                                                   <---------ANAC58                         <--------                       <---------ANAC58            <---------ANAC58                        --------->CCA1(1)                       <---------ANAC58          <-----------GT1<---------TOE2(3)          --------->RVE1(1)                       <---------ANAC46     <----------DOF2 --------->TOE2(3)       ----------->GT1 --AHL20(2)   <-------TEIL             ------>NtERF2<----------DOF2           --------->ANAC46   tgaaaaaaaaacttgatacattcttgcttgaagagtctctctgcctctttgttactttcctgccttaaggaacacattatacatcagagtaaaatatctt  21970800                                                                                    <---------At4g35610                                                                                    <---------ZAT2                                                                                    ----------->RAV1(2)                                                                                    --------->At4g35610                                                                               <------ZmHOX2a(1)                                                                              --------->LBD16 <------                                                                            <-----------RAV1(2)         --------->MYB52(2)                           <---------YAB1        <---------HSFB2a(2)       --------->ICU4                               <---------ICU4          <---------LBD16 <-------- >ARR11(3)                                          --------->YAB1          --------->HSFB2a(2) >AHL20(1)                                         <---------ATHB51--------->ANAC58 --------->ZAT2 -ARR11(3)      ---------->DOF2                    --------->ICU4  --------->ANAC58--------->GLK1(2)   atatatgtcattagttactaaagacttgagaaaacagacacttgttttcagaaattatgatgcaagaacaagctctgtccaggagaagctggccctatct  21970900                                                         --------->REM1(1)                                                       ----------->RAV1(1)     --------->GLK1(1)                                                      --------->ANAC46         <---------GLK1(1)  <--                                                      ----------->HVH21      --------->ATHB12    ----                                                  ----------->RAV1(2)       <---------ATHB12     ----                                                  ------>ZmHOX2a(1) --------->At4g35610          <---  ------>ZmHOX2a(1)         <---------ANAC58   ------>ZmHOX2a(1)    <---------At4g35610          <--- --------->TOE2(3)     <-----------RAV1(1)    <---------ALFIN1  ------>ZmHOX2a(1)      ------>ZmHOX2a(1) ---CCA1(2) ------>ZmHOX2a(1)    ------>ZmHOX2a(1)=================RAV    <---------At4g35610 ------- -CCA1(2)  --------->TOE2(3)<---------ANAC58------>ZmHOX2a(1)   <-----------HVH21   ------>ZmHOX2a(1)   cttcctcaagactcctcaatgcttcttgttgcttcctcccttcatcctcctcctctgcgacatctccttcagatgccgatgatttcctcctctgcgatga  21971000  Previous    Next  AGI:  At3g59410.1    Description:  protein kinase family protein. Identical to Probable serine/threonine-protein kinase GCN2 (GCN2) [Arabidopsis Thaliana] (GB:Q9LX30;GB:Q8H2D3); similar to histidyl-tRNA synthetase, putative / histidine--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT3G02760.1); similar to H0425E08.5 [Oryza sativa (indica cultivar-group)] (GB:CAH67537.1); similar to OJ990528_30.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE02047.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO64791.1); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain RWD (InterPro:IPR006575); contains InterPro domain Protein ki Range:  from: 21961546    to: 21970243    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g59415.1    Description:  pre-tRNA. tRNA-Thr (anticodon: TGT) Range:  from: 21970487    to: 21970557    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g59420.1    Description:  ACR4 (ARABIDOPSIS CRINKLY4); kinase. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G39180.1); similar to crinkly4 [Zea mays] (GB:NP_001105395.1); similar to crinkly4-like protein [Musa acuminata] (GB:AAR96009.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64792.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain TNFR/CD27/30/40/95 cysteine-rich region; (InterPro:IPR001368); contains InterPro domain Range:  from: 21970624    to: 21974018    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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